BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0019a.6
(1380 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 346 5e-95
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 343 3e-94
TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polypro... 161 2e-39
TC235104 weakly similar to UP|Q850H8 (Q850H8) Gag-pol polyprotei... 151 2e-36
CO982036 149 1e-35
TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Frag... 139 9e-33
CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {V... 129 1e-29
BU548243 127 3e-29
TC231544 weakly similar to UP|Q9FLR2 (Q9FLR2) Polyprotein-like, ... 124 3e-28
BU549979 121 2e-27
TC221132 weakly similar to UP|O23529 (O23529) RETROTRANSPOSON li... 75 1e-25
BE211208 114 2e-25
TC213888 similar to UP|Q9SFE1 (Q9SFE1) T26F17.17, partial (11%) 114 3e-25
CO981879 71 9e-25
AW185460 105 1e-22
CO982898 67 2e-22
BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vi... 104 3e-22
TC225402 weakly similar to UP|Q6I923 (Q6I923) Copia-like retrotr... 103 5e-22
BI427153 101 2e-21
BI321712 101 2e-21
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 346 bits (887), Expect = 5e-95
Identities = 195/513 (38%), Positives = 288/513 (56%), Gaps = 8/513 (1%)
Frame = +1
Query: 875 PKGFKSAMKHPHWLPAMEDELSALHKKFTWTLVPRPYTTNVVGSK*VFRTKFHSDGTVER 934
PK K A+ W+ AM++EL + W LVPRP TNV+G+K +F+ K + +G + R
Sbjct: 3202 PKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITR 3381
Query: 935 LKTCLVAQGLTQIPGFDYSLTFSPVVKATTVRLILSLVVLND*QLHQLDVKNAFLHGHLT 994
K LVAQG TQI G D+ TF+PV + ++RL+L + + +L+Q+DVK+AFL+G+L
Sbjct: 3382 NKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLN 3561
Query: 995 ETVYMEQPHGFVDL-----VSRLM--CVG*TRLSTASNRRLVLGFSA*ALFSCVLVFRVV 1047
E VY+EQP GF D V RL G + A RL F +R
Sbjct: 3562 EEVYVEQPKGFADPTHPDHVYRLKKALYGLKQAPRAWYERLTE-------FLTQQGYRKG 3720
Query: 1048 GLIHPCSFFYKGHITLYLLVYVDDIILTGSDPSLLT*FIACLNDEFAIKYLGKLGYFLGL 1107
G+ + +YVDDI+ G +L F+ + EF + +G+L YFLGL
Sbjct: 3721 GIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGL 3900
Query: 1108 EITYTADGLFLGHAKYAHDLLSHALMLEASHVLTPLAAGSHLVSSGEGYS-DPTHYRSLV 1166
++ D +FL ++YA +++ M ASH TP L G S D + YRS++
Sbjct: 3901 QVKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMI 4080
Query: 1167 GALQYLTITRPDLSYAVNTVSQFLQTPTVDHFQAVKRIIRYVCAMQHFGLTFRRTSSPAV 1226
G+L YLT +RPD++YAV +++ P + H VKRI++YV +G+ + S+P +
Sbjct: 4081 GSLLYLTASRPDITYAVGVCARYQANPKISHLTQVKRILKYVNGTSDYGIMYCHCSNPML 4260
Query: 1227 LGYSDADWARCTDHRRSTYGYAIFLGYNLLSWSAKKQPSVAHSSCESEYRAMANTASELV 1286
+GY DADWA D R+ST G +LG NL+SW +KKQ V+ S+ E+EY A ++ S+LV
Sbjct: 4261 VGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLV 4440
Query: 1287 WLLNLLHELRVRLSAPPLFLSDNQSALFMAQNPVAHKHAKHIDLDCHFVRELVSSGRLAV 1346
W+ +L E V L+ DN SA+ +++NPV H KHID+ H++R+LV + +
Sbjct: 4441 WMKQMLKEYNVEQDVMTLY-CDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVITL 4617
Query: 1347 RHVPTSLQLADIFTKVLPRPLFDLFRSKLRVGL 1379
+HV T Q+ADIFTK L F+ R KL + L
Sbjct: 4618 KHVDTEEQIADIFTKALDANQFEKLRGKLGICL 4716
Score = 179 bits (453), Expect = 1e-44
Identities = 125/477 (26%), Positives = 208/477 (43%), Gaps = 17/477 (3%)
Frame = +1
Query: 260 RCQLCRKQGHYAAKCPVRWDRPSESANLTHS--------------FAAGCSLNNSNRSDK 305
RC C K GH C P ++S SL S + D
Sbjct: 1507 RCHYCGKYGHIKPFCYHLHGHPHHGTQSSNSRKKMMWVPKHKAVSLVVHTSLRASAKEDW 1686
Query: 306 YMDTGATSHMTHSLSQLTYSHAYSGNDRVLVGNGAGLHITHIGSRSASHSVPLSNVLVVP 365
Y+D+G + HMT + + + V G+G+ I +G L+ VL+V
Sbjct: 1687 YLDSGCSRHMT-GVKEFLLNIEPCSTSYVTFGDGSKGKIIGMGKLVHDGLPSLNKVLLVK 1863
Query: 366 RLTNNLVSVSKLTRDHNVRAIFEADSFVIQNRQTGAVLGKGPCDKGFYVLDQGSQALLAT 425
LT NL+S+S+L D F ++ N ++ ++ Y+ + +T
Sbjct: 1864 GLTANLISISQLC-DEGFNVNFTKSECLVTNEKSEVLMKGSRSKDNCYLWTPQETSYSST 2040
Query: 426 SSSLPRASFELWHSRLDHVNFDIIKKLHKLGCFN--VSSILPKPICCTSCQMAKSKRLVC 483
S +WH R H++ +KK+ G + + + C CQ+ K ++
Sbjct: 2041 CLSSKEDEVRIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSH 2220
Query: 484 YD-NHKRASAVLDLVHCDLWGPSPVASVDGFSYFVIFVDDFSQFTWFYPLKRKSDFYDVL 542
H+ S VL+L+H DL GP V S+ G Y + VDDFS+FTW ++ KS+ ++V
Sbjct: 2221 QKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSETFEVF 2400
Query: 543 VRFKAFVENQFSRSLKVFQSDNGTEFTNNKVQALFSSSGVLHRFLCPHTQAQNGRVERKH 602
++ + +K +SD+G EF N++ +S G+ H F T QNG VERK+
Sbjct: 2401 KELSLRLQREKDCVIKRIRSDHGREFENSRFTEFCTSEGITHEFSAAITPQQNGIVERKN 2580
Query: 603 RHVLELGLAMLYHSHVSTSYWVHAFSTAVYIINRVPSKVLSDQIPFQLLFQVAPTYANFH 662
R + E ML+ + + W A +TA YI NRV + + +++ P+ +FH
Sbjct: 2581 RTLQEAARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPSVKHFH 2760
Query: 663 PFGCRVFPCLRPYMKNKFSPRGTPCIFLGYNSHHKGFKCFDPTTSRTYVSRHAQFDE 719
FG + + K P+ IFLGY+++ + ++ F+ T S + D+
Sbjct: 2761 IFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDD 2931
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 343 bits (880), Expect = 3e-94
Identities = 195/513 (38%), Positives = 285/513 (55%), Gaps = 8/513 (1%)
Frame = +1
Query: 875 PKGFKSAMKHPHWLPAMEDELSALHKKFTWTLVPRPYTTNVVGSK*VFRTKFHSDGTVER 934
PK K A+ W+ AM++EL + W LVPRP TNV+G+K +F+ K + +G + R
Sbjct: 3205 PKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITR 3384
Query: 935 LKTCLVAQGLTQIPGFDYSLTFSPVVKATTVRLILSLVVLND*QLHQLDVKNAFLHGHLT 994
K LVAQG TQI G D+ TF+PV + ++RL+L + + +L+Q+DVK+AFL+G+L
Sbjct: 3385 NKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLN 3564
Query: 995 ETVYMEQPHGFVDL-----VSRLM--CVG*TRLSTASNRRLVLGFSA*ALFSCVLVFRVV 1047
E Y+EQP GFVD V RL G + A RL F +R
Sbjct: 3565 EEAYVEQPKGFVDPTHPDHVYRLKKALYGLKQAPRAWYERLTE-------FLTQQGYRKG 3723
Query: 1048 GLIHPCSFFYKGHITLYLLVYVDDIILTGSDPSLLT*FIACLNDEFAIKYLGKLGYFLGL 1107
G+ + +YVDDI+ G +L F+ + EF + +G+L YFLGL
Sbjct: 3724 GIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGL 3903
Query: 1108 EITYTADGLFLGHAKYAHDLLSHALMLEASHVLTPLAAGSHLVSSGEGYS-DPTHYRSLV 1166
++ D +FL +KYA +++ M ASH TP L G S D + YRS++
Sbjct: 3904 QVKQMEDSIFLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMI 4083
Query: 1167 GALQYLTITRPDLSYAVNTVSQFLQTPTVDHFQAVKRIIRYVCAMQHFGLTFRRTSSPAV 1226
G+L YLT +RPD++YAV +++ P + H VKRI++YV +G+ + S +
Sbjct: 4084 GSLLYLTASRPDITYAVGVCARYQANPKISHLNQVKRILKYVNGTSDYGIMYCHCSDSML 4263
Query: 1227 LGYSDADWARCTDHRRSTYGYAIFLGYNLLSWSAKKQPSVAHSSCESEYRAMANTASELV 1286
+GY DADWA D R+ST G +LG NL+SW +KKQ V+ S+ E+EY A ++ S+LV
Sbjct: 4264 VGYCDADWAGSADDRKSTSGGCFYLGTNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLV 4443
Query: 1287 WLLNLLHELRVRLSAPPLFLSDNQSALFMAQNPVAHKHAKHIDLDCHFVRELVSSGRLAV 1346
W+ +L E V L+ DN SA+ +++NPV H KHID+ H++R+LV + +
Sbjct: 4444 WMKQMLKEYNVEQDVMTLY-CDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVITL 4620
Query: 1347 RHVPTSLQLADIFTKVLPRPLFDLFRSKLRVGL 1379
HV T Q+ADIFTK L F+ R KL + L
Sbjct: 4621 EHVDTEEQIADIFTKALDANQFEKLRGKLGICL 4719
Score = 182 bits (463), Expect = 7e-46
Identities = 128/477 (26%), Positives = 208/477 (42%), Gaps = 17/477 (3%)
Frame = +1
Query: 260 RCQLCRKQGHYAAKCPVRWDRPSESANLTHS--------------FAAGCSLNNSNRSDK 305
RC C K GH C P + S SL S + D
Sbjct: 1510 RCHYCGKYGHIKPFCYHLHGHPHHGTQSSSSGRKMMWVPKHKIVSLVVHTSLRASAKEDW 1689
Query: 306 YMDTGATSHMTHSLSQLTYSHAYSGNDRVLVGNGAGLHITHIGSRSASHSVPLSNVLVVP 365
Y+D+G + HMT + + + V G+G+ IT +G L+ VL+V
Sbjct: 1690 YLDSGCSRHMT-GVKEFLVNIEPCSTSYVTFGDGSKGKITGMGKLVHDGLPSLNKVLLVK 1866
Query: 366 RLTNNLVSVSKLTRDHNVRAIFEADSFVIQNRQTGAVLGKGPCDKGFYVLDQGSQALLAT 425
LT NL+S+S+L D F ++ N ++ ++ Y+ + +T
Sbjct: 1867 GLTANLISISQLC-DEGFNVNFTKSECLVTNEKSEVLMKGSRSKDNCYLWTPQETSYSST 2043
Query: 426 SSSLPRASFELWHSRLDHVNFDIIKKLHKLGCFN--VSSILPKPICCTSCQMAKSKRLVC 483
++WH R H++ +KK+ G + + + C CQ+ K ++
Sbjct: 2044 CLFSKEDEVKIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSH 2223
Query: 484 YD-NHKRASAVLDLVHCDLWGPSPVASVDGFSYFVIFVDDFSQFTWFYPLKRKSDFYDVL 542
H+ S VL+L+H DL GP V S+ G Y + VDDFS+FTW ++ KSD ++V
Sbjct: 2224 QKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSDTFEVF 2403
Query: 543 VRFKAFVENQFSRSLKVFQSDNGTEFTNNKVQALFSSSGVLHRFLCPHTQAQNGRVERKH 602
++ + +K +SD+G EF N+K +S G+ H F T QNG VERK+
Sbjct: 2404 KELSLRLQREKDCVIKRIRSDHGREFENSKFTEFCTSEGITHEFSAAITPQQNGIVERKN 2583
Query: 603 RHVLELGLAMLYHSHVSTSYWVHAFSTAVYIINRVPSKVLSDQIPFQLLFQVAPTYANFH 662
R + E ML+ + + W A +TA YI NRV + + +++ PT +FH
Sbjct: 2584 RTLQEAARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPTVKHFH 2763
Query: 663 PFGCRVFPCLRPYMKNKFSPRGTPCIFLGYNSHHKGFKCFDPTTSRTYVSRHAQFDE 719
FG + + K P+ IFLGY+++ + ++ F+ T S + D+
Sbjct: 2764 IFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDD 2934
>TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprotein, partial
(7%)
Length = 804
Score = 161 bits (408), Expect = 2e-39
Identities = 83/221 (37%), Positives = 135/221 (60%), Gaps = 3/221 (1%)
Frame = +1
Query: 1158 DPTHYRSLVGALQYLTITRPDLSYAVNTVSQFLQTPTVDHFQAVKRIIRYVCAMQHFGLT 1217
D T +R L+G+L+YL +RP++ +AV+ +S+F++ P + H QA KR++R + G+
Sbjct: 10 DVTEFRRLIGSLRYLCNSRPNICFAVSLISRFMKRPRLSHMQAAKRVLRLIKGTIGSGVL 189
Query: 1218 F---RRTSSPAVLGYSDADWARCTDHRRSTYGYAIFLGYNLLSWSAKKQPSVAHSSCESE 1274
F ++ P +LGY+D+DW R + +ST GY ++ S+KKQ +A S+CE+E
Sbjct: 190 FPFKAKSGKPDLLGYTDSDWKRDPEQEKSTGGYLFMYNDAPVA*SSKKQDVIALSTCEAE 369
Query: 1275 YRAMANTASELVWLLNLLHELRVRLSAPPLFLSDNQSALFMAQNPVAHKHAKHIDLDCHF 1334
Y A + A + VW++NLL EL++R P L DN+SA+ +A++P H +KHI+L H+
Sbjct: 370 YVAASLGACQAVWMMNLLEELKLRERKPVNLLIDNKSAINLAKHPTLHGRSKHIELRFHY 549
Query: 1335 VRELVSSGRLAVRHVPTSLQLADIFTKVLPRPLFDLFRSKL 1375
+R+ VS G + V + QLAD+ TK + F S+L
Sbjct: 550 IRDQVSKGNVTVEYCKAEEQLADLMTKPIQVSRFKQICSEL 672
>TC235104 weakly similar to UP|Q850H8 (Q850H8) Gag-pol polyprotein
(Fragment), partial (28%)
Length = 865
Score = 151 bits (382), Expect = 2e-36
Identities = 92/284 (32%), Positives = 150/284 (52%)
Frame = +2
Query: 334 VLVGNGAGLHITHIGSRSASHSVPLSNVLVVPRLTNNLVSVSKLTRDHNVRAIFEADSFV 393
+ + +G+ + T IG S + S+ L++V+ + N+ S+S+LTR N F+A+SFV
Sbjct: 20 ITLADGSRVVATGIGHVSPTSSLSLNSVVFILGCPFNITSLSQLTRFRNCSVTFDANSFV 199
Query: 394 IQNRQTGAVLGKGPCDKGFYVLDQGSQALLATSSSLPRASFELWHSRLDHVNFDIIKKLH 453
IQ TG +G G G Y L + + +S +L H RL H + L
Sbjct: 200 IQECGTGWTIGVGIESHGLYYLKPNLSWVCSAVTSP-----KLLHERLGHPH------LS 346
Query: 454 KLGCFNVSSILPKPICCTSCQMAKSKRLVCYDNHKRASAVLDLVHCDLWGPSPVASVDGF 513
KL S K + C SCQ+ K R R + ++H D+WGP+ V+S+ +
Sbjct: 347 KLKIMVPSLEKIKDLFCESCQLGKHVRSSXRHVESRVDSPFLVIHXDIWGPNRVSSMS-Y 523
Query: 514 SYFVIFVDDFSQFTWFYPLKRKSDFYDVLVRFKAFVENQFSRSLKVFQSDNGTEFTNNKV 573
YFV F+D+FSQ T + +K +S+ L ++ QF +++K+ +SDN E+ ++ +
Sbjct: 524 RYFVTFIDEFSQCTRVFLMKERSEILSFLTSVNK-IKTQFGKTIKILRSDNAKEYFSSVI 700
Query: 574 QALFSSSGVLHRFLCPHTQAQNGRVERKHRHVLELGLAMLYHSH 617
S+ G+LH+F CPHT QN ERK+RH++E +L H++
Sbjct: 701 SPFXSAQGILHQFSCPHTPQQNDIAERKNRHLVETARTLLLHAN 832
>CO982036
Length = 674
Score = 149 bits (375), Expect = 1e-35
Identities = 91/212 (42%), Positives = 122/212 (56%), Gaps = 5/212 (2%)
Frame = -2
Query: 1057 YKGHI-TLYLLVYVDDIILTGSDPSLLT*FIACLNDEFAIKYLGKLGYFLGLEITYTADG 1115
YK HI T+YLLVYVD II+TGS +L+ + LN F +K LGKL YF+ +E+ D
Sbjct: 673 YKTHILTVYLLVYVD-IIITGSSCTLIQNLTSKLNSSFPLKLLGKLDYFVEIEVKSMPDL 497
Query: 1116 LFLGHAKYAHDLLSHALMLEASHVLTPLAAGSHLVSSGEG-YSDPTHYRSLVGALQYLTI 1174
LF ++ +A + +P+ L S +S PT YRS+VGALQY T+
Sbjct: 496 LFSLRTSI-FEIFCRKPR*QAQPISSPMTTTCKLSKSDSDLFSGPTFYRSVVGALQYTTV 320
Query: 1175 TRPDLSYAVNTVSQFLQTPTVDHFQAVKRIIRYVCAMQHFGLTFRRTSSPAVL---GYSD 1231
RP++S+AVN V QF+ P H+ VKRI+RY+ +GL + S L G+ D
Sbjct: 319 IRPEISFAVNKVCQFMSNPLDSHWTEVKRILRYLKGSLSYGL*LKPAISSQPLPIRGFCD 140
Query: 1232 ADWARCTDHRRSTYGYAIFLGYNLLSWSAKKQ 1263
ADWA D +RST G A+FLG NL+SW KQ
Sbjct: 139 ADWASAVDDKRSTSGAAVFLGPNLISWWXXKQ 44
>TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragment), partial
(30%)
Length = 687
Score = 139 bits (350), Expect = 9e-33
Identities = 70/148 (47%), Positives = 90/148 (60%)
Frame = +2
Query: 1228 GYSDADWARCTDHRRSTYGYAIFLGYNLLSWSAKKQPSVAHSSCESEYRAMANTASELVW 1287
GY DADWA C RRST GY +F+G NL+SW +KKQ VA SS E+EYR+MA EL+W
Sbjct: 23 GYCDADWAGCPMDRRSTSGYCVFIGGNLVSWKSKKQTVVARSSAEAEYRSMAMVTCELMW 202
Query: 1288 LLNLLHELRVRLSAPPLFLSDNQSALFMAQNPVAHKHAKHIDLDCHFVRELVSSGRLAVR 1347
+ L ELR DNQ+AL +A NPV H+ KHI++DCHF+RE + S +
Sbjct: 203 IKQFLQELRFCEELQMKLYCDNQAALHIASNPVFHERTKHIEIDCHFIREKLLSKEIVTE 382
Query: 1348 HVPTSLQLADIFTKVLPRPLFDLFRSKL 1375
+ ++ Q DI TK L P + SKL
Sbjct: 383 FIGSNDQPVDILTKSLRGPKIQIVCSKL 466
>CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {Vitis
vinifera}, partial (34%)
Length = 409
Score = 129 bits (323), Expect = 1e-29
Identities = 66/135 (48%), Positives = 84/135 (61%)
Frame = +3
Query: 869 LHTVT*PKGFKSAMKHPHWLPAMEDELSALHKKFTWTLVPRPYTTNVVGSK*VFRTKFHS 928
L ++T P + A+ HP W AM DE+ AL TW LVP P VG + V+ K
Sbjct: 3 LSSLTVPSTIREALDHPGWRQAMVDEMQALENNGTWELVPLPPGKTTVGCRWVYTVKVGP 182
Query: 929 DGTVERLKTCLVAQGLTQIPGFDYSLTFSPVVKATTVRLILSLVVLND*QLHQLDVKNAF 988
+G V+RLK LVA+G TQ+ G +Y TFSPV TTVRL L++ + LHQLD+KNAF
Sbjct: 183 NGKVDRLKARLVAKGYTQVYGIEYCDTFSPVFFLTTVRLFLAMAAIRHWPLHQLDIKNAF 362
Query: 989 LHGHLTETVYMEQPH 1003
LHG L E +YMEQP+
Sbjct: 363 LHGDLEEDIYMEQPN 407
>BU548243
Length = 599
Score = 127 bits (319), Expect = 3e-29
Identities = 69/147 (46%), Positives = 92/147 (61%)
Frame = -1
Query: 1231 DADWARCTDHRRSTYGYAIFLGYNLLSWSAKKQPSVAHSSCESEYRAMANTASELVWLLN 1290
DA WA D RST G AIFLG NL+SW ++KQ A SS E+EYR++A T++EL W+
Sbjct: 587 DAGWASDVDDHRSTLGSAIFLGPNLISWWSRKQQVTAQSSTEAEYRSIAQTSAELTWIQA 408
Query: 1291 LLHELRVRLSAPPLFLSDNQSALFMAQNPVAHKHAKHIDLDCHFVRELVSSGRLAVRHVP 1350
LL EL++ + PP+ L DN+SA+ +A N V H KH+++D FV E V S +L + H+P
Sbjct: 407 LLMELQIPFT-PPVILCDNKSAVAIAHNLVFHSRTKHMEIDVFFVHEKVLSKQLQIFHIP 231
Query: 1351 TSLQLADIFTKVLPRPLFDLFRSKLRV 1377
Q A I TK L F +SKL V
Sbjct: 230 ALDQWAGILTKPLSSARFTFLKSKLTV 150
>TC231544 weakly similar to UP|Q9FLR2 (Q9FLR2) Polyprotein-like, partial (16%)
Length = 662
Score = 124 bits (311), Expect = 3e-28
Identities = 78/179 (43%), Positives = 101/179 (55%), Gaps = 3/179 (1%)
Frame = +3
Query: 1200 AVKRIIRYVCAMQHFGLTFRRTSSPAVLGYSDADWARCTDHRRSTYGYAIFLGYNLLSWS 1259
A R+++Y+ GL+F R S +LG+SDADWA C D +S Y FLG +L+SW
Sbjct: 18 AATRVLKYLKGCPRKGLSFSRESPIQILGFSDADWATCIDSSKSITWYCFFLGSSLISWK 197
Query: 1260 AKKQPSVAHSSCESE--YRAMANTASELVWLLNLLHELRVRLSAPPLFLSDNQSALFMAQ 1317
AKKQ +V+ SS SE YRA+ +T EL WL LL +L V L DNQSAL
Sbjct: 198 AKKQNTVSRSSSSSEAKYRALTSTTCELQWLTYLLKDLHV-----TLIYCDNQSAL--Q* 356
Query: 1318 NPVAHKHAKHIDLDCHFVRELVSSGRL-AVRHVPTSLQLADIFTKVLPRPLFDLFRSKL 1375
P+ + +++DCH VRE G + + V +S QLADIFTK L LF SKL
Sbjct: 357 LPIKVIYHGQLEIDCHIVREKTQQGLMHCLLPVSSSNQLADIFTKALSPKLFSSNLSKL 533
>BU549979
Length = 615
Score = 121 bits (304), Expect = 2e-27
Identities = 62/178 (34%), Positives = 101/178 (55%), Gaps = 2/178 (1%)
Frame = -1
Query: 1186 VSQFLQTPTVDHFQAVKRIIRYVCAMQHFGLTFRRTSSPAVLGYSDADWARCTDHRRSTY 1245
+ ++ P +DH++ K+++RY+ + + L +++T+ V+GYSD+D+A C D RRST
Sbjct: 612 LGRYQSNPGIDHWKTAKKVMRYLQGTKDYMLMYKQTNCLEVIGYSDSDFAGCVDSRRSTS 433
Query: 1246 GYAIFLGYNLLSWSAKKQPSVAHSSCESEYRAMANTASELVWLLNLLHELRV--RLSAPP 1303
GY L ++SW + KQ +A S+ E E+ S VWL + + LRV +S P
Sbjct: 432 GYIFMLADGVVSWRSSKQTLIATSTMEVEFVPCFEATSHGVWLKSFMSSLRVVDSISRPL 253
Query: 1304 LFLSDNQSALFMAQNPVAHKHAKHIDLDCHFVRELVSSGRLAVRHVPTSLQLADIFTK 1361
DN +A+FMA+N + +KHID+ +RE V ++ + HV T L + D TK
Sbjct: 252 KLYCDNFAAVFMAKNNKSGNRSKHIDIKYLVIRERVKEKKVVIEHVNTELMIVDPLTK 79
>TC221132 weakly similar to UP|O23529 (O23529) RETROTRANSPOSON like protein,
partial (5%)
Length = 799
Score = 75.5 bits (184), Expect(3) = 1e-25
Identities = 37/104 (35%), Positives = 58/104 (55%)
Frame = +1
Query: 1181 YAVNTVSQFLQTPTVDHFQAVKRIIRYVCAMQHFGLTFRRTSSPAVLGYSDADWARCTDH 1240
++++T SQF++ PT QA KR++RY+ FGL R + + + DA+W T
Sbjct: 115 HSLSTSSQFMKDPTKIRMQATKRVLRYLKGTIDFGLQLRSSPDQHLRAFYDANWVDNTSD 294
Query: 1241 RRSTYGYAIFLGYNLLSWSAKKQPSVAHSSCESEYRAMANTASE 1284
RST Y ++ G +++SWS KKQ + SS + EY + T E
Sbjct: 295 IRSTGAYVVYFGLSVISWSCKKQSIIDKSSTKVEYHKITTTIIE 426
Score = 49.7 bits (117), Expect(3) = 1e-25
Identities = 25/61 (40%), Positives = 37/61 (59%)
Frame = +2
Query: 1303 PLFLSDNQSALFMAQNPVAHKHAKHIDLDCHFVRELVSSGRLAVRHVPTSLQLADIFTKV 1362
P S N A+++ NPV H KH+ +D FV++LV++ +L V HVP+ D+FTK
Sbjct: 449 PTMYSYNIGAMYLCANPVFHLCMKHLTIDHLFVQDLVANKQLRVSHVPSCH*HVDLFTKA 628
Query: 1363 L 1363
L
Sbjct: 629 L 631
Score = 31.2 bits (69), Expect(3) = 1e-25
Identities = 15/40 (37%), Positives = 24/40 (59%)
Frame = +3
Query: 1148 HLVSSGEGYSDPTHYRSLVGALQYLTITRPDLSYAVNTVS 1187
+L S D Y LV +LQYL++T PD+++ +N +S
Sbjct: 18 NLASGDVPSCDGIVYCQLVDSLQYLSLTCPDIAFPINKLS 137
>BE211208
Length = 413
Score = 114 bits (286), Expect = 2e-25
Identities = 63/129 (48%), Positives = 84/129 (64%), Gaps = 2/129 (1%)
Frame = +2
Query: 1063 LYLLVYVDDIILTGSDPSLLT*FIACLNDEFAIKYLGKLGYFLGLEITYTADG-LFLGHA 1121
+YLLVYVDDII+TG L+ + LN F++K LG+L YFLG+E+ +T G + L +
Sbjct: 26 VYLLVYVDDIIITGRSNYLIQSLVHHLNSNFSLKQLGQLDYFLGIEVHHTPTGSVLLTQS 205
Query: 1122 KYAHDLLSHALMLEASHVLTPLAAGSHLVSSGEG-YSDPTHYRSLVGALQYLTITRPDLS 1180
KY DLL M EA + +P+ L +G+ SDPT YRS+VGALQY TITRP++S
Sbjct: 206 KYICDLLHKTDMAEAKPISSPMVTNLRLSKNGDDLLSDPTMYRSVVGALQYPTITRPEIS 385
Query: 1181 YAVNTVSQF 1189
+A N V QF
Sbjct: 386 FAANKVCQF 412
>TC213888 similar to UP|Q9SFE1 (Q9SFE1) T26F17.17, partial (11%)
Length = 493
Score = 114 bits (285), Expect = 3e-25
Identities = 59/139 (42%), Positives = 82/139 (58%)
Frame = +3
Query: 1239 DHRRSTYGYAIFLGYNLLSWSAKKQPSVAHSSCESEYRAMANTASELVWLLNLLHELRVR 1298
D R+ST G+ F+G +W +KKQP V S+CE+EY A + +WL NLL EL++
Sbjct: 9 DDRKSTTGFVFFMGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELKMP 188
Query: 1299 LSAPPLFLSDNQSALFMAQNPVAHKHAKHIDLDCHFVRELVSSGRLAVRHVPTSLQLADI 1358
P DN+SAL +A+NPV H+ +KHID HF+RE + + +++V + Q ADI
Sbjct: 189 QEEPMEICVDNKSALALAKNPVFHEKSKHIDTRYHFIRECIEKKEVKLKYVMSQDQAADI 368
Query: 1359 FTKVLPRPLFDLFRSKLRV 1377
FTK L F RS L V
Sbjct: 369 FTKPLKLETFVKLRSMLGV 425
>CO981879
Length = 576
Score = 70.9 bits (172), Expect(2) = 9e-25
Identities = 34/95 (35%), Positives = 52/95 (53%), Gaps = 3/95 (3%)
Frame = -1
Query: 545 FKAF---VENQFSRSLKVFQSDNGTEFTNNKVQALFSSSGVLHRFLCPHTQAQNGRVERK 601
FK F ++ QF +KVF+SDNG E+ N + +G++H+ C T QNG ERK
Sbjct: 567 FKTFFQMIQTQFQVKIKVFRSDNGREYFNKHLSKXXLENGIIHQSSCVDTPQQNGVAERK 388
Query: 602 HRHVLELGLAMLYHSHVSTSYWVHAFSTAVYIINR 636
+RH+ E+ A+L+ + W A T Y+ N+
Sbjct: 387 NRHLXEVARALLFQNKAPKYXWGEAILTGTYLKNK 283
Score = 62.8 bits (151), Expect(2) = 9e-25
Identities = 31/89 (34%), Positives = 46/89 (50%), Gaps = 5/89 (5%)
Frame = -2
Query: 636 RVPSKVLSDQIPFQLLFQVAPTYA-----NFHPFGCRVFPCLRPYMKNKFSPRGTPCIFL 690
R+PSK+L+ + P + P FGC VF + + K PR C+F+
Sbjct: 284 RMPSKILNFRTPLDVFTSAFPNNRLSCTLPLKIFGCTVFVHIHEPNQGKLEPRAKKCVFV 105
Query: 691 GYNSHHKGFKCFDPTTSRTYVSRHAQFDE 719
GY + KG+KCFDPT+ +T+V+ F E
Sbjct: 104 GYAPNQKGYKCFDPTSKKTFVTIDVTFFE 18
>AW185460
Length = 411
Score = 105 bits (263), Expect = 1e-22
Identities = 49/105 (46%), Positives = 74/105 (69%)
Frame = +2
Query: 1175 TRPDLSYAVNTVSQFLQTPTVDHFQAVKRIIRYVCAMQHFGLTFRRTSSPAVLGYSDADW 1234
TRPD+ YA + +S+F+Q+P+ HF A KRI+RY+ + FG+ + ++ +LGY+D+DW
Sbjct: 92 TRPDIMYATSLLSRFMQSPSQIHFGAGKRILRYLQGTKAFGIWYTTETNSELLGYTDSDW 271
Query: 1235 ARCTDHRRSTYGYAIFLGYNLLSWSAKKQPSVAHSSCESEYRAMA 1279
A TD +ST GYA LG + SW++KKQ +VA S+ E+EY A+A
Sbjct: 272 AGSTDDMKSTSGYAFSLGSGMFSWASKKQATVAQSTAEAEYVAVA 406
>CO982898
Length = 816
Score = 67.0 bits (162), Expect(2) = 2e-22
Identities = 28/58 (48%), Positives = 43/58 (73%)
Frame = -3
Query: 581 GVLHRFLCPHTQAQNGRVERKHRHVLELGLAMLYHSHVSTSYWVHAFSTAVYIINRVP 638
G++H+ + PHTQ QN VERK RH+++ GL++L H+ + +W HAF T V++INR+P
Sbjct: 766 GIIHKLIFPHTQYQNV-VERKQRHIVKFGLSLLSHASLPLKFWGHAFITPVFLINRLP 596
Score = 58.5 bits (140), Expect(2) = 2e-22
Identities = 31/86 (36%), Positives = 45/86 (52%)
Frame = -1
Query: 638 PSKVLSDQIPFQLLFQVAPTYANFHPFGCRVFPCLRPYMKNKFSPRGTPCIFLGYNSHHK 697
P+ ++ +P+ LF Y+ FGC FP +RPY KF+ + CIFLG + HK
Sbjct: 597 PTVSINFAVPYTQLFNQMLDYSFPRVFGCACFPLIRPYNIQKFNFKSHECIFLGNYTSHK 418
Query: 698 GFKCFDPTTSRTYVSRHAQFDEFCFP 723
+KC P + VS+ F+E FP
Sbjct: 417 NYKCLAP--AGKLVSKDVIFNEI*FP 346
>BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vinifera},
partial (34%)
Length = 407
Score = 104 bits (259), Expect = 3e-22
Identities = 55/100 (55%), Positives = 65/100 (65%)
Frame = -2
Query: 907 VPRPYTTNVVGSK*VFRTKFHSDGTVERLKTCLVAQGLTQIPGFDYSLTFSPVVKATTVR 966
VP P VG + V+ K G V+RLK LVA+G TQ+ G DY TFSPV K TTVR
Sbjct: 406 VPLPPGKTPVGCRWVYTVKVGPTGEVDRLKARLVAKGYTQVYGIDYCDTFSPVAKLTTVR 227
Query: 967 LILSLVVLND*QLHQLDVKNAFLHGHLTETVYMEQPHGFV 1006
L L++ + LHQLD+KNAFLHG L E +YMEQP GFV
Sbjct: 226 LFLAMAAICHWPLHQLDIKNAFLHGDLEEDIYMEQPPGFV 107
>TC225402 weakly similar to UP|Q6I923 (Q6I923) Copia-like retrotransposon
Hopscotch polyprotein, partial (7%)
Length = 1446
Score = 103 bits (257), Expect = 5e-22
Identities = 51/109 (46%), Positives = 67/109 (60%)
Frame = +2
Query: 1231 DADWARCTDHRRSTYGYAIFLGYNLLSWSAKKQPSVAHSSCESEYRAMANTASELVWLLN 1290
DA+WA R ST GY + +G NL+ W + K VA SS E+EY+AM EL+W+
Sbjct: 8 DANWAVSPIDRGSTLGYCVSIGENLVLWKSNK*NVVARSSAEAEYKAMTVATCELIWIKQ 187
Query: 1291 LLHELRVRLSAPPLFLSDNQSALFMAQNPVAHKHAKHIDLDCHFVRELV 1339
LL EL+ + DNQ+AL +A NPV H+ KHI++DCHFVRE V
Sbjct: 188 LLQELKFGSTQQMKLCCDNQAALHIASNPVFHERTKHIEIDCHFVREKV 334
>BI427153
Length = 422
Score = 101 bits (252), Expect = 2e-21
Identities = 56/142 (39%), Positives = 77/142 (53%), Gaps = 6/142 (4%)
Frame = +1
Query: 584 HRFLCPHTQAQNGRVERKHRHVLELGLAMLYHSHVSTSYWVHAFSTAVYIINRVPSKVLS 643
H+ CPHT QNG ERK+ H+LE +++ +S+V T +W A TA ++INR+PS L
Sbjct: 1 HQSTCPHTPQQNGIAERKNHHLLETARSLMLNSNVPTHHWGDAVLTACFLINRMPSSSLE 180
Query: 644 DQIPF------QLLFQVAPTYANFHPFGCRVFPCLRPYMKNKFSPRGTPCIFLGYNSHHK 697
+QIP LLF V+P FGC F +K S R C+FLGY+ K
Sbjct: 181 NQIPHSIVFPNDLLFYVSPKV-----FGCTCFVHDLSPGLDKLSARSVKCVFLGYSRLQK 345
Query: 698 GFKCFDPTTSRTYVSRHAQFDE 719
G+ C+ P R Y+S + F E
Sbjct: 346 GYTCYFPNMRRYYMSANVTFFE 411
>BI321712
Length = 399
Score = 101 bits (252), Expect = 2e-21
Identities = 51/128 (39%), Positives = 83/128 (64%), Gaps = 1/128 (0%)
Frame = -3
Query: 1065 LLVYVDDIILTGSDPSLLT*FIACLNDEFAIKYLGKLGYFLGLEITYTADGLFLGHAKYA 1124
L +YVDD+I TG++PS+ F +++EF + +G + Y+LG+E+ G+F+ YA
Sbjct: 385 LCLYVDDLIFTGNNPSMFEEFKKDMSNEFEMTDMGLMAYYLGIEVKQEDKGIFITQEGYA 206
Query: 1125 HDLLSHALMLEASHVLTPLAAGSHLVSSGEGYS-DPTHYRSLVGALQYLTITRPDLSYAV 1183
++L M +A+ V TP+ GS L +G + DPT Y+SL+G+L+YLT TRPD+ Y V
Sbjct: 205 KEVLKKFKMDDANPVGTPMECGSKLSKHEKGENVDPTLYKSLIGSLRYLTCTRPDILYVV 26
Query: 1184 NTVSQFLQ 1191
VS++++
Sbjct: 25 GVVSRYME 2
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.325 0.138 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,381,824
Number of Sequences: 63676
Number of extensions: 1329513
Number of successful extensions: 34727
Number of sequences better than 10.0: 1466
Number of HSP's better than 10.0 without gapping: 13633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21025
length of query: 1380
length of database: 12,639,632
effective HSP length: 109
effective length of query: 1271
effective length of database: 5,698,948
effective search space: 7243362908
effective search space used: 7243362908
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 65 (29.6 bits)
Lotus: description of TM0019a.6