BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0018.4
(408 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204850 similar to GB|AAM16178.1|20334844|AY094022 AT3g12390/T2... 37 0.016
TC203635 similar to PIR|T46225|T46225 alpha NAC-like protein - A... 33 0.18
TC204849 similar to GB|AAM16178.1|20334844|AY094022 AT3g12390/T2... 33 0.23
TC204848 similar to UP|Q6ICZ8 (Q6ICZ8) At5g13850, partial (89%) 32 0.39
TC217786 weakly similar to UP|Q6V9I6 (Q6V9I6) Histone deacetylas... 32 0.39
TC203654 similar to PIR|T46225|T46225 alpha NAC-like protein - A... 32 0.67
CA819376 similar to GP|22654971|gb| At1g80930/F23A5_23 {Arabidop... 31 1.1
BG511439 weakly similar to GP|1930077|gb|A acyl-ACP thioesterase... 30 2.6
TC218918 UP|Q39892 (Q39892) Nucleosome assembly protein 1, complete 29 3.3
TC205596 similar to GB|AAO63377.1|28950907|BT005313 At4g34530 {A... 29 3.3
TC215452 similar to UP|P93488 (P93488) NAP1Ps, partial (29%) 29 4.4
TC227636 weakly similar to UP|Q9SYP0 (Q9SYP0) F9H16.4 protein, p... 29 4.4
TC210768 similar to UP|Q93ZM5 (Q93ZM5) At1g05910/T20M3_16, parti... 28 5.7
TC210209 UP|Q9SWB3 (Q9SWB3) Seed maturation protein PM39 (Fragme... 28 5.7
TC207977 28 5.7
TC215201 similar to UP|Q70Z19 (Q70Z19) Nucleosome assembly prote... 28 7.4
TC230677 similar to UP|Q7Q3H3 (Q7Q3H3) EbiP7281 (Fragment), part... 28 7.4
TC215451 weakly similar to UP|Q94K07 (Q94K07) Nucleosome assembl... 28 9.7
CO983879 28 9.7
>TC204850 similar to GB|AAM16178.1|20334844|AY094022 AT3g12390/T2E22_130
{Arabidopsis thaliana;} , partial (85%)
Length = 878
Score = 37.0 bits (84), Expect = 0.016
Identities = 21/63 (33%), Positives = 32/63 (50%)
Frame = +1
Query: 336 DEVDQSDEDNDSDENEVNMAEFKPKSPYTYEGENKRKIPAKSFRGLKTTSDYQRVMVKRS 395
+EVD D+D D D +E + +S T + RK K G+K + RV VK+S
Sbjct: 145 EEVDDDDDDEDDDHDEGLEGDASGRSKQTRSEKKSRKAMLK--LGMKPVTGVSRVTVKKS 318
Query: 396 QNL 398
+N+
Sbjct: 319 KNI 327
>TC203635 similar to PIR|T46225|T46225 alpha NAC-like protein - Arabidopsis
thaliana {Arabidopsis thaliana;} , partial (71%)
Length = 1007
Score = 33.5 bits (75), Expect = 0.18
Identities = 19/64 (29%), Positives = 33/64 (50%)
Frame = +1
Query: 335 QDEVDQSDEDNDSDENEVNMAEFKPKSPYTYEGENKRKIPAKSFRGLKTTSDYQRVMVKR 394
+D+ D+ D+D+D D+ E + S + + RK K GLK + RV +KR
Sbjct: 199 KDDDDEDDDDDDEDDKEDDAQGGAEGSKQSRSEKKSRKAMLKL--GLKPVTGVSRVTIKR 372
Query: 395 SQNL 398
++N+
Sbjct: 373 TKNI 384
>TC204849 similar to GB|AAM16178.1|20334844|AY094022 AT3g12390/T2E22_130
{Arabidopsis thaliana;} , partial (96%)
Length = 883
Score = 33.1 bits (74), Expect = 0.23
Identities = 24/105 (22%), Positives = 43/105 (40%)
Frame = +2
Query: 294 IQLADKVRRVEKLRLEKYKPEEVFQGEESSCIRATQNSEIGQDEVDQSDEDNDSDENEVN 353
IQ+ + E+L + + +++ GE E DE + D+D+D D++
Sbjct: 53 IQVTMTAQTQEELLAQHLEQQKIHDGEPVV--------EDDDDEEEDDDDDDDEDDDHAE 208
Query: 354 MAEFKPKSPYTYEGENKRKIPAKSFRGLKTTSDYQRVMVKRSQNL 398
E K+ A G+K + RV VK+S+N+
Sbjct: 209 GLEGDASGRSKQTRSEKKSRKAMLKLGMKPVTGVSRVTVKKSKNI 343
>TC204848 similar to UP|Q6ICZ8 (Q6ICZ8) At5g13850, partial (89%)
Length = 916
Score = 32.3 bits (72), Expect = 0.39
Identities = 20/66 (30%), Positives = 33/66 (49%)
Frame = +3
Query: 333 IGQDEVDQSDEDNDSDENEVNMAEFKPKSPYTYEGENKRKIPAKSFRGLKTTSDYQRVMV 392
+ D+ D D+D++ D+N A + K T + RK K G+K + RV V
Sbjct: 153 VEDDDEDDEDDDDEDDDNVEGDASGRSKQ--TRSEKKSRKAMLK--LGMKPVTGVSRVTV 320
Query: 393 KRSQNL 398
K+S+N+
Sbjct: 321 KKSKNI 338
>TC217786 weakly similar to UP|Q6V9I6 (Q6V9I6) Histone deacetylase, partial
(48%)
Length = 1193
Score = 32.3 bits (72), Expect = 0.39
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Frame = +2
Query: 312 KPEEVFQGEESSCIRATQNSEIGQDE------VDQSDEDNDSDENEVNMAEFKPKSPYTY 365
K +++ GE+ + + + +D+ ++ S+ D+DSD+ E E ++P
Sbjct: 467 KQKKIANGEDEDSSESESDDDSSEDQLTANGDIESSEGDDDSDDEEEGDDESDEETPKKI 646
Query: 366 EGENKRKI 373
E NKR I
Sbjct: 647 EASNKRGI 670
>TC203654 similar to PIR|T46225|T46225 alpha NAC-like protein - Arabidopsis
thaliana {Arabidopsis thaliana;} , partial (76%)
Length = 1139
Score = 31.6 bits (70), Expect = 0.67
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = +3
Query: 335 QDEVDQSDEDNDSDENEVNMAEFKPKSPYTYEGENKRKIPAKSFRGLKTTSDYQRVMVKR 394
++E + DED+D D+ E + + + RK K GLK + RV +KR
Sbjct: 231 KEETEDEDEDDDDDDKEDDAQGGAEGGKQSRSEKKSRKAMLKL--GLKPVTGVSRVTIKR 404
Query: 395 SQNL 398
++N+
Sbjct: 405 TKNI 416
>CA819376 similar to GP|22654971|gb| At1g80930/F23A5_23 {Arabidopsis
thaliana}, partial (10%)
Length = 449
Score = 30.8 bits (68), Expect = 1.1
Identities = 18/67 (26%), Positives = 31/67 (45%), Gaps = 10/67 (14%)
Frame = +1
Query: 305 KLRLEKYKPEEVFQGEESSCIRATQNSEIGQD----------EVDQSDEDNDSDENEVNM 354
++ L+ +KP+ F E C + S +G++ E D DED +SDE E
Sbjct: 226 EISLDIFKPDPNFL-ENEKCYEELKKSMLGEEFEDDEEGLDAESDDDDEDEESDEEEEEQ 402
Query: 355 AEFKPKS 361
+ K ++
Sbjct: 403 MQIKDET 423
>BG511439 weakly similar to GP|1930077|gb|A acyl-ACP thioesterase {Garcinia
mangostana}, partial (25%)
Length = 356
Score = 29.6 bits (65), Expect = 2.6
Identities = 15/32 (46%), Positives = 20/32 (61%)
Frame = -3
Query: 193 ANAVEEVLNHHGFNVGYVNRPNFTSPFSEVVL 224
AN +E N GFN G +N PNF +P E++L
Sbjct: 192 ANLQQESSN--GFNSGSLNDPNFVAPHKELLL 103
>TC218918 UP|Q39892 (Q39892) Nucleosome assembly protein 1, complete
Length = 1507
Score = 29.3 bits (64), Expect = 3.3
Identities = 13/46 (28%), Positives = 24/46 (51%)
Frame = +1
Query: 315 EVFQGEESSCIRATQNSEIGQDEVDQSDEDNDSDENEVNMAEFKPK 360
E QG+E + ++ E +DE + ++D D D+ E + + K K
Sbjct: 970 EAAQGDEFEDLEDDEDEEEDEDEDEDEEDDEDEDDEEEDDTKTKKK 1107
>TC205596 similar to GB|AAO63377.1|28950907|BT005313 At4g34530 {Arabidopsis
thaliana;} , partial (28%)
Length = 1029
Score = 29.3 bits (64), Expect = 3.3
Identities = 23/93 (24%), Positives = 45/93 (47%), Gaps = 10/93 (10%)
Frame = +3
Query: 314 EEVFQGEESSCIRATQNSEIGQDEVDQS-DED------NDSDENEVNMAEFKPKSPYTYE 366
E + G+E++ R QNS++ E+D + D+D + E++V + K+ +
Sbjct: 423 ENMASGKENAKKRKPQNSKVVVAEIDNNKDKDKRVKVTGEEGESKVTEHHTRNKNAKSNA 602
Query: 367 GENKRKIPAKSFRGLKTTS---DYQRVMVKRSQ 396
+N R+ A + +G + + DY V +R Q
Sbjct: 603 NKNNRETSADTSKGSEVQNQKPDYIHVRARRGQ 701
>TC215452 similar to UP|P93488 (P93488) NAP1Ps, partial (29%)
Length = 609
Score = 28.9 bits (63), Expect = 4.4
Identities = 18/75 (24%), Positives = 35/75 (46%)
Frame = +3
Query: 315 EVFQGEESSCIRATQNSEIGQDEVDQSDEDNDSDENEVNMAEFKPKSPYTYEGENKRKIP 374
E QG+E + ++ E +++ D+ +ED+D D+++ + E E + K+K
Sbjct: 105 EAIQGDEFGDLEDDEDDEDIEEDDDEDEEDDDDDDDDDDDEE---------ESKTKKKSS 257
Query: 375 AKSFRGLKTTSDYQR 389
A G D Q+
Sbjct: 258 APKKSGRAQLGDGQQ 302
>TC227636 weakly similar to UP|Q9SYP0 (Q9SYP0) F9H16.4 protein, partial (8%)
Length = 1200
Score = 28.9 bits (63), Expect = 4.4
Identities = 13/34 (38%), Positives = 17/34 (49%)
Frame = +3
Query: 339 DQSDEDNDSDENEVNMAEFKPKSPYTYEGENKRK 372
D+SDED D D+NE K + + E RK
Sbjct: 363 DESDEDEDKDKNEEEPVRTKEEEELILKAEKARK 464
>TC210768 similar to UP|Q93ZM5 (Q93ZM5) At1g05910/T20M3_16, partial (20%)
Length = 875
Score = 28.5 bits (62), Expect = 5.7
Identities = 13/54 (24%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +1
Query: 76 TQQMSTMLNPLIQNTQHLTRQLCRIADVFGAPPLNQAFHQVP--DYGQSVPLSF 127
++ +S ++ P +Q +HL + +C I+D+F + ++ YG ++PL +
Sbjct: 7 SRPLSLVVQPCLQ--RHLEKAMCSISDIFPPASITSELTKLSMLSYGSAIPLVY 162
>TC210209 UP|Q9SWB3 (Q9SWB3) Seed maturation protein PM39 (Fragment),
complete
Length = 1541
Score = 28.5 bits (62), Expect = 5.7
Identities = 49/269 (18%), Positives = 90/269 (33%), Gaps = 1/269 (0%)
Frame = +1
Query: 119 YGQSVPLSFTQHEVQNFSQNEPQNLSQDQNFGPNEVLNGQENSVEKQPHNFDQNLDNNVL 178
YG S + T H+ QN +P +S + ++ + +N V + D
Sbjct: 358 YGDSTETTQTSHQEQNTGNEKPSTISSATSAITDKAVTA-KNVVASKLGYGDNTETTQTT 534
Query: 179 VNRNQNDYGGPQNVANAVEEVLNHHGFNVGYVNRPNFTSPFSEVVLQAELPRGGKVPKVT 238
+ RNQ + G + + E + N F + E R T
Sbjct: 535 LARNQEENTGNEKPSTISSETSALADKDASAKNSVASKLGFGDTARTHEEKRTNHAAAPT 714
Query: 239 KFSGDTGESTVEHIARHMETRCSTHVPEFELVKMAIGGLDYSIKKNLVNDEFIDMIQL-A 297
++ +S E +A V + G +K + E I + +
Sbjct: 715 EYGKSVAQSLTEKLAP---------------VSGKVSGAGSGVKSKVSGTEKISNVGVEQ 849
Query: 298 DKVRRVEKLRLEKYKPEEVFQGEESSCIRATQNSEIGQDEVDQSDEDNDSDENEVNMAEF 357
DK V+ ++K +P G+E + + + + EV + + V+ A
Sbjct: 850 DKGVSVKDYLVDKLRP-----GDEDRALSKVISETLHKKEVHPVEVTEEGVRKMVSDAVH 1014
Query: 358 KPKSPYTYEGENKRKIPAKSFRGLKTTSD 386
K E E +RK+ + G T S+
Sbjct: 1015K------REDEPERKVEHQKILGKVTESE 1083
>TC207977
Length = 763
Score = 28.5 bits (62), Expect = 5.7
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 140 PQNLSQDQNFGPNEVLNGQENSVEKQPH 167
P+N +N GPN+V+N Q ++V+ H
Sbjct: 412 PENEQLPKNVGPNKVVNTQTHTVKSSTH 495
>TC215201 similar to UP|Q70Z19 (Q70Z19) Nucleosome assembly protein 1-like
protein 1, partial (55%)
Length = 904
Score = 28.1 bits (61), Expect = 7.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 336 DEVDQSDEDNDSDENEVNMAEFKPKSPYTYEGENKRK 372
DEVD DE+ D DE+E E + + +G+++ K
Sbjct: 507 DEVDYDDEEGDEDEDEDEDEEEEEEEEEEKKGKSRSK 617
>TC230677 similar to UP|Q7Q3H3 (Q7Q3H3) EbiP7281 (Fragment), partial (26%)
Length = 1076
Score = 28.1 bits (61), Expect = 7.4
Identities = 17/44 (38%), Positives = 24/44 (53%), Gaps = 1/44 (2%)
Frame = +3
Query: 319 GEESSCIRATQNSEIGQD-EVDQSDEDNDSDENEVNMAEFKPKS 361
GEES ++ E G D E D DED+DSDE + + K ++
Sbjct: 15 GEES------EDDEEGLDSESDDDDEDDDSDEEDEEQMQIKDET 128
>TC215451 weakly similar to UP|Q94K07 (Q94K07) Nucleosome assembly protein,
partial (20%)
Length = 777
Score = 27.7 bits (60), Expect = 9.7
Identities = 10/37 (27%), Positives = 23/37 (62%)
Frame = +2
Query: 315 EVFQGEESSCIRATQNSEIGQDEVDQSDEDNDSDENE 351
E QG+E + ++ E +++ D+ +ED+D D+++
Sbjct: 56 EAIQGDEFGDLEDDEDDEDIEEDDDEDEEDDDDDDDD 166
>CO983879
Length = 770
Score = 27.7 bits (60), Expect = 9.7
Identities = 30/127 (23%), Positives = 50/127 (38%), Gaps = 6/127 (4%)
Frame = -2
Query: 167 HNFDQNL-DNNVLVNRN---QNDYGGPQNVANAVEEVLNHHGFNVGYVNRPNFTSPFSEV 222
H F QNL D +VLV+ + D G N A+ + N G ++ F +
Sbjct: 595 HAFVQNLHDQHVLVHSQSYPRGDLGPGGNSASPRDTTKNRRGIMQASISTRIFNN----- 431
Query: 223 VLQAELPRGGKVPKVTKFSGDTGESTVEHIARHMETRCSTHVPEFELVKMAI--GGLDYS 280
+ K GDT E + + H+ +HVPE ++++ + G L++
Sbjct: 430 --------------IQKLIGDTSEQSNAKESNHIIPYLHSHVPEVKILQSPLESGTLNFM 293
Query: 281 IKKNLVN 287
N N
Sbjct: 292 SVANSKN 272
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.312 0.130 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,373,805
Number of Sequences: 63676
Number of extensions: 173225
Number of successful extensions: 804
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of query: 408
length of database: 12,639,632
effective HSP length: 100
effective length of query: 308
effective length of database: 6,272,032
effective search space: 1931785856
effective search space used: 1931785856
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0018.4