BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0018.1
(127 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC215532 similar to UP|Q84LL8 (Q84LL8) Salt tolerance protein 4,... 111 1e-25
CO980250 103 3e-23
TC215533 similar to UP|Q84LL8 (Q84LL8) Salt tolerance protein 4,... 102 4e-23
TC225135 similar to UP|Q9M549 (Q9M549) Poly(A)-binding protein, ... 35 0.009
TC225576 similar to UP|Q9AT32 (Q9AT32) Poly(A)-binding protein, ... 34 0.021
TC227154 similar to UP|Q9LJH8 (Q9LJH8) RNA binding protein nucle... 33 0.035
BI973231 32 0.060
TC223521 weakly similar to UP|Q84ZB9 (Q84ZB9) RNA recognition mo... 32 0.10
TC210376 weakly similar to UP|Q7T1C5 (Q7T1C5) Nil per os, partia... 31 0.17
TC214650 similar to UP|Q9LJH8 (Q9LJH8) RNA binding protein nucle... 30 0.23
BI971885 30 0.30
TC225553 weakly similar to UP|Q06106 (Q06106) Ypr112cp, partial ... 30 0.30
TC209039 similar to UP|Q9M549 (Q9M549) Poly(A)-binding protein, ... 30 0.39
TC204079 similar to UP|Q9SWA8 (Q9SWA8) Glycine-rich RNA-binding ... 29 0.51
TC222223 similar to UP|Q8LKG6 (Q8LKG6) Cleavage stimulation fact... 28 0.87
TC204105 similar to UP|Q8VX74 (Q8VX74) Glycine-rich RNA-binding ... 28 0.87
TC204085 similar to UP|Q8VX74 (Q8VX74) Glycine-rich RNA-binding ... 28 1.1
TC204095 similar to UP|Q9MBF3 (Q9MBF3) Glycine-rich RNA-binding ... 28 1.1
TC225340 similar to UP|Q9SPI1 (Q9SPI1) Splicing factor SR1, part... 28 1.1
>TC215532 similar to UP|Q84LL8 (Q84LL8) Salt tolerance protein 4, partial
(79%)
Length = 1070
Score = 111 bits (277), Expect = 1e-25
Identities = 67/118 (56%), Positives = 77/118 (64%)
Frame = +3
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSGPINESIRRKNARHPVMNLNIY 60
GYALIEYERAEEA+NAIENLNGSELLTQ IYVDWAFSSGPINES+RRKNAR P +
Sbjct: 537 GYALIEYERAEEARNAIENLNGSELLTQTIYVDWAFSSGPINESVRRKNARPPRERRS-- 710
Query: 61 FKTGQLVIGAPGALAGDIDVVCIGNLIVPLCELLNEQFVFYWSRSGNFFQYLCSPFRQ 118
+P + V N+ V +CE ++E+ FY G FF YLC FRQ
Sbjct: 711 --------RSPRRRY*HV**V---NVCVDVCEPVSERLGFYCYSCGGFF*YLC--FRQ 845
Score = 28.1 bits (61), Expect = 1.1
Identities = 22/62 (35%), Positives = 30/62 (47%)
Frame = +1
Query: 66 LVIGAPGALAGDIDVVCIGNLIVPLCELLNEQFVFYWSRSGNFFQYLCSPFRQNTPWLLR 125
LV G PGA GDID +C + V +C + + + F C+ RQNT +L
Sbjct: 694 LVNGVPGAPGGDID-MCSE*MFVLMCVNP*VSGLVSIAIAVEDFSDTCASVRQNTYLMLT 870
Query: 126 IL 127
IL
Sbjct: 871 IL 876
>CO980250
Length = 787
Score = 103 bits (256), Expect = 3e-23
Identities = 51/61 (83%), Positives = 54/61 (87%)
Frame = -3
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSGPINESIRRKNARHPVMNLNIY 60
GYALIEYERAEEA+NAIENLNGSELLTQ IYVDWAFSSGPINES+RRKNAR+ L I
Sbjct: 332 GYALIEYERAEEARNAIENLNGSELLTQTIYVDWAFSSGPINESVRRKNARYVYTCLMIL 153
Query: 61 F 61
F
Sbjct: 152 F 150
>TC215533 similar to UP|Q84LL8 (Q84LL8) Salt tolerance protein 4, partial
(79%)
Length = 1124
Score = 102 bits (255), Expect = 4e-23
Identities = 49/53 (92%), Positives = 51/53 (95%)
Frame = +3
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSGPINESIRRKNARHP 53
GYALIEYERAEEA+NAIENLNGSELLTQ IYVDWAFSSGPINES+RRKNAR P
Sbjct: 516 GYALIEYERAEEARNAIENLNGSELLTQTIYVDWAFSSGPINESVRRKNARPP 674
>TC225135 similar to UP|Q9M549 (Q9M549) Poly(A)-binding protein, partial
(97%)
Length = 2392
Score = 35.0 bits (79), Expect = 0.009
Identities = 19/62 (30%), Positives = 30/62 (47%)
Frame = +3
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSGPINESIRRKNARHPVMNLNIY 60
GY ++++ E A+ AIE LNG L + +YV GP R++A N++
Sbjct: 567 GYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV------GPFLRKQERESAADKAKFNNVF 728
Query: 61 FK 62
K
Sbjct: 729 VK 734
>TC225576 similar to UP|Q9AT32 (Q9AT32) Poly(A)-binding protein, partial
(93%)
Length = 2491
Score = 33.9 bits (76), Expect = 0.021
Identities = 19/62 (30%), Positives = 30/62 (47%)
Frame = +3
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSGPINESIRRKNARHPVMNLNIY 60
GY ++++ E A+NAI+ LNG + + +YV G R+NA N+Y
Sbjct: 747 GYGFVQFDNEEAAQNAIDKLNGMLINDKQVYV------GHFLRKQDRENALSKTKFNNVY 908
Query: 61 FK 62
K
Sbjct: 909 VK 914
>TC227154 similar to UP|Q9LJH8 (Q9LJH8) RNA binding protein nucleolysin;
oligouridylate binding protein (AT3g14100/MAG2_5),
partial (92%)
Length = 1698
Score = 33.1 bits (74), Expect = 0.035
Identities = 17/38 (44%), Positives = 21/38 (54%)
Frame = +1
Query: 2 YALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSG 39
Y I Y A AI +LNG L Q I V+WA++SG
Sbjct: 424 YGFIHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASG 537
>BI973231
Length = 422
Score = 32.3 bits (72), Expect = 0.060
Identities = 12/32 (37%), Positives = 23/32 (71%)
Frame = +2
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYV 32
G+ + Y+ ++AK A+E +NGS+L ++ +YV
Sbjct: 257 GFGFVNYDNPDDAKRAMEAMNGSKLGSKILYV 352
>TC223521 weakly similar to UP|Q84ZB9 (Q84ZB9) RNA recognition motif
(RRM)-containing protein-like, partial (57%)
Length = 651
Score = 31.6 bits (70), Expect = 0.10
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWA 35
G+ + + +EA+NAIE++ G L + I+VD+A
Sbjct: 205 GFGFVTFASQDEAENAIEDMKGKTLNGRVIFVDYA 309
>TC210376 weakly similar to UP|Q7T1C5 (Q7T1C5) Nil per os, partial (6%)
Length = 625
Score = 30.8 bits (68), Expect = 0.17
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +1
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSGPINESIRRKNA 50
G+A +EY +EAKNA E L + L +++ ++ A + E +R K A
Sbjct: 205 GFAFVEYVTQQEAKNAREALASTHLYGRHLLIEHAKEDETL-EELRAKTA 351
>TC214650 similar to UP|Q9LJH8 (Q9LJH8) RNA binding protein nucleolysin;
oligouridylate binding protein (AT3g14100/MAG2_5),
partial (93%)
Length = 1684
Score = 30.4 bits (67), Expect = 0.23
Identities = 14/37 (37%), Positives = 20/37 (53%)
Frame = +2
Query: 2 YALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSS 38
Y ++Y A AI LNG + Q I V+WA++S
Sbjct: 461 YGFVDYFDRSSAAFAIVTLNGRNIFGQPIKVNWAYAS 571
>BI971885
Length = 421
Score = 30.0 bits (66), Expect = 0.30
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAF 36
G+ I Y+ E + +AIE +NG L + I V +A+
Sbjct: 52 GFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAY 159
>TC225553 weakly similar to UP|Q06106 (Q06106) Ypr112cp, partial (6%)
Length = 1371
Score = 30.0 bits (66), Expect = 0.30
Identities = 14/51 (27%), Positives = 30/51 (58%)
Frame = +1
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSGPINESIRRKNAR 51
G+A +EY +EA+NA++ L+ + L +++ ++ A + + E R A+
Sbjct: 916 GFAFVEYVTQQEAQNALKALSSTHLYGRHLVIERAKEAESLEELRARTAAQ 1068
>TC209039 similar to UP|Q9M549 (Q9M549) Poly(A)-binding protein, partial
(25%)
Length = 800
Score = 29.6 bits (65), Expect = 0.39
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +1
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYV 32
G+ +++E E A+NAI+ LNG + + ++V
Sbjct: 694 GHGFVQFESEESAQNAIDKLNGMLINDKXVFV 789
>TC204079 similar to UP|Q9SWA8 (Q9SWA8) Glycine-rich RNA-binding protein,
complete
Length = 748
Score = 29.3 bits (64), Expect = 0.51
Identities = 14/39 (35%), Positives = 22/39 (55%)
Frame = +1
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSG 39
G+ + + + K+AIE +NG L +NI V+ A S G
Sbjct: 214 GFGFVTFASEQSMKDAIEGMNGQNLDGRNITVNEAQSRG 330
>TC222223 similar to UP|Q8LKG6 (Q8LKG6) Cleavage stimulation factor 64,
partial (22%)
Length = 445
Score = 28.5 bits (62), Expect = 0.87
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWA 35
GY EY+ E A +A NL G E+ + + VD+A
Sbjct: 284 GYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 388
>TC204105 similar to UP|Q8VX74 (Q8VX74) Glycine-rich RNA-binding protein,
partial (61%)
Length = 313
Score = 28.5 bits (62), Expect = 0.87
Identities = 14/39 (35%), Positives = 21/39 (52%)
Frame = +1
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSG 39
G+ + + K+AIE +NG L +NI V+ A S G
Sbjct: 130 GFGFVTFASENSMKDAIEGMNGQNLDGRNITVNEAQSRG 246
>TC204085 similar to UP|Q8VX74 (Q8VX74) Glycine-rich RNA-binding protein,
partial (87%)
Length = 628
Score = 28.1 bits (61), Expect = 1.1
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSG 39
G+ + + + ++AIE +NG L +NI V+ A S G
Sbjct: 153 GFGFVTFASEDSMRDAIEGMNGQNLDGRNITVNEAQSRG 269
>TC204095 similar to UP|Q9MBF3 (Q9MBF3) Glycine-rich RNA-binding protein,
partial (80%)
Length = 758
Score = 28.1 bits (61), Expect = 1.1
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSG 39
G+ + + + ++AIE +NG L +NI V+ A S G
Sbjct: 429 GFGFVTFASEDSMRDAIEGMNGQNLDGRNITVNEAQSRG 545
>TC225340 similar to UP|Q9SPI1 (Q9SPI1) Splicing factor SR1, partial (81%)
Length = 1349
Score = 28.1 bits (61), Expect = 1.1
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +1
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSGPINESIRRKNA 50
GYA +E+E A++A++AI +G + + V+ A + S R N+
Sbjct: 277 GYAFVEFEDAQDAEDAIRGRDGYDFDGHRLRVEPAHGGRGHSSSKDRHNS 426
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.323 0.141 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,839,613
Number of Sequences: 63676
Number of extensions: 78895
Number of successful extensions: 500
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of query: 127
length of database: 12,639,632
effective HSP length: 86
effective length of query: 41
effective length of database: 7,163,496
effective search space: 293703336
effective search space used: 293703336
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)
Lotus: description of TM0018.1