BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0016.5
(733 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BU964506 similar to PIR|C86469|C864 protein F12K21.14 [imported]... 149 4e-36
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 123 3e-28
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 122 4e-28
TC235104 weakly similar to UP|Q850H8 (Q850H8) Gag-pol polyprotei... 103 3e-22
TC222253 similar to UP|Q9ZQE4 (Q9ZQE4) Copia-like retroelement p... 78 1e-14
CO984748 68 1e-11
BI701169 62 2e-10
BI784757 64 2e-10
TC207859 62 9e-10
TC233180 similar to UP|Q944K0 (Q944K0) At1g18030/T10F20_3, parti... 62 9e-10
BI425191 weakly similar to GP|14586969|gb| pol polyprotein {Citr... 59 1e-08
BI424202 57 3e-08
TC213393 weakly similar to UP|Q850H8 (Q850H8) Gag-pol polyprotei... 52 1e-06
BF595216 49 8e-06
BI425007 similar to SP|Q9BBS8|RPOC_ DNA-directed RNA polymerase ... 49 1e-05
BQ296988 similar to GP|21740616|em OSJNBb0089K24.12 {Oryza sativ... 48 2e-05
AI442763 47 2e-05
AI901012 46 5e-05
CO981879 35 7e-04
CO981347 41 0.002
>BU964506 similar to PIR|C86469|C864 protein F12K21.14 [imported] -
Arabidopsis thaliana, partial (6%)
Length = 431
Score = 149 bits (376), Expect = 4e-36
Identities = 72/92 (78%), Positives = 81/92 (87%)
Frame = +3
Query: 85 TAAKMWAYLKKIYNQNNTARRFQLEHDIAIFQQEILSISEFYSQFMNLWADYTDIVYGSV 144
TAA MW YLKK+Y QNN A RFQLEHDIA F+Q+ LSIS+FYSQFMNLWA+YT+IVY +
Sbjct: 3 TAATMWNYLKKVYGQNNEA*RFQLEHDIATFRQDSLSISDFYSQFMNLWAEYTNIVYADL 182
Query: 145 STEGLTSVQTVHETTK*DQFLMKLRSDFEGIR 176
+EGL+SVQTVHETTK DQFLMKLRSDFEGIR
Sbjct: 183 PSEGLSSVQTVHETTKRDQFLMKLRSDFEGIR 278
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 123 bits (308), Expect = 3e-28
Identities = 84/268 (31%), Positives = 126/268 (46%), Gaps = 5/268 (1%)
Frame = +1
Query: 337 WYFDYGASNHMANNAEALTNITQNFGNLKIQVANGNHLPITAIG----DISTSLNDVYVS 392
WY D G S HM E L NI + + +G+ I +G D SLN V +
Sbjct: 1684 WYLDSGCSRHMTGVKEFLLNI-EPCSTSYVTFGDGSKGKIIGMGKLVHDGLPSLNKVLLV 1860
Query: 393 PGLTSNLIFVGQLVDNDCRVAFSKSGCLVQDQHSGKLIARGPKVGRLFPLCFSMSPCSSL 452
GLT+NLI + QL D V F+KS CLV ++ S L+ K R C+ +P +
Sbjct: 1861 KGLTANLISISQLCDEGFNVNFTKSECLVTNEKSEVLM----KGSRSKDNCYLWTPQETS 2028
Query: 453 PFVSCHSATVVNFELWHKRLGHPNSNVLYELLQSGVLGNKETPSLSTIKFDCTYCKLGKS 512
+C S+ +WH+R GH + + +++ G + + + C C++GK
Sbjct: 2029 YSSTCLSSKEDEVRIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRI-CGECQIGKQ 2205
Query: 513 KILPFPNHQ-SNISQTFDMIHSDLWGITPVISHANYKYFVTFIDDFSRFTWVYFLRSKDE 571
+ Q S+ +++H DL G V S +Y +DDFSRFTWV F+R K E
Sbjct: 2206 VKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSE 2385
Query: 572 VFSAFKFFHAYVETQFSSKIKILRSDNG 599
F FK ++ + IK +RSD+G
Sbjct: 2386 TFEVFKELSLRLQREKDCVIKRIRSDHG 2469
Score = 31.2 bits (69), Expect = 1.7
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
Frame = +1
Query: 234 VQCFCCKGFGHYASNCP------RKSCNYCKKD 260
+QC C+G+GH + CP RK + C+ D
Sbjct: 898 IQCHGCEGYGHIIAECPTHLKKHRKGLSVCQSD 996
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 122 bits (307), Expect = 4e-28
Identities = 83/268 (30%), Positives = 127/268 (46%), Gaps = 5/268 (1%)
Frame = +1
Query: 337 WYFDYGASNHMANNAEALTNITQNFGNLKIQVANGNHLPITAIG----DISTSLNDVYVS 392
WY D G S HM E L NI + + +G+ IT +G D SLN V +
Sbjct: 1687 WYLDSGCSRHMTGVKEFLVNI-EPCSTSYVTFGDGSKGKITGMGKLVHDGLPSLNKVLLV 1863
Query: 393 PGLTSNLIFVGQLVDNDCRVAFSKSGCLVQDQHSGKLIARGPKVGRLFPLCFSMSPCSSL 452
GLT+NLI + QL D V F+KS CLV ++ S L+ K R C+ +P +
Sbjct: 1864 KGLTANLISISQLCDEGFNVNFTKSECLVTNEKSEVLM----KGSRSKDNCYLWTPQETS 2031
Query: 453 PFVSCHSATVVNFELWHKRLGHPNSNVLYELLQSGVLGNKETPSLSTIKFDCTYCKLGKS 512
+C + ++WH+R GH + + +++ G + + + C C++GK
Sbjct: 2032 YSSTCLFSKEDEVKIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRI-CGECQIGKQ 2208
Query: 513 KILPFPNHQ-SNISQTFDMIHSDLWGITPVISHANYKYFVTFIDDFSRFTWVYFLRSKDE 571
+ Q S+ +++H DL G V S +Y +DDFSRFTWV F+R K +
Sbjct: 2209 VKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSD 2388
Query: 572 VFSAFKFFHAYVETQFSSKIKILRSDNG 599
F FK ++ + IK +RSD+G
Sbjct: 2389 TFEVFKELSLRLQREKDCVIKRIRSDHG 2472
Score = 31.6 bits (70), Expect = 1.3
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
Frame = +1
Query: 234 VQCFCCKGFGHYASNCP------RKSCNYCKKD 260
+QC C+G+GH + CP RK + C+ D
Sbjct: 898 IQCHGCEGYGHIKAECPTHLKKQRKGLSVCRSD 996
>TC235104 weakly similar to UP|Q850H8 (Q850H8) Gag-pol polyprotein
(Fragment), partial (28%)
Length = 865
Score = 103 bits (257), Expect = 3e-22
Identities = 79/239 (33%), Positives = 121/239 (50%), Gaps = 6/239 (2%)
Frame = +2
Query: 366 IQVANGNHLPITAIGDIST----SLNDVYVSPGLTSNLIFVGQLVD-NDCRVAFSKSGCL 420
I +A+G+ + T IG +S SLN V G N+ + QL +C V F + +
Sbjct: 20 ITLADGSRVVATGIGHVSPTSSLSLNSVVFILGCPFNITSLSQLTRFRNCSVTFDANSFV 199
Query: 421 VQDQHSGKLIARGPKVGRLFPLCFSMSPCSSLPFVSCHSATVVNFELWHKRLGHPNSNVL 480
+Q+ +G I G + L+ L P +S + V + +L H+RLGHP+ + L
Sbjct: 200 IQECGTGWTIGVGIESHGLYYL---------KPNLSWVCSAVTSPKLLHERLGHPHLSKL 352
Query: 481 YELLQSGVLGNKETPSLSTIK-FDCTYCKLGKSKILPFPNHQSNISQTFDMIHSDLWGIT 539
++ PSL IK C C+LGK + +S + F +IH D+WG
Sbjct: 353 KIMV----------PSLEKIKDLFCESCQLGKHVRSSXRHVESRVDSPFLVIHXDIWGPN 502
Query: 540 PVISHANYKYFVTFIDDFSRFTWVYFLRSKDEVFSAFKFFHAYVETQFSSKIKILRSDN 598
V S +Y+YFVTFID+FS+ T V+ ++ + E+ S + ++TQF IKILRSDN
Sbjct: 503 RV-SSMSYRYFVTFIDEFSQCTRVFLMKERSEILSFLTSVNK-IKTQFGKTIKILRSDN 673
>TC222253 similar to UP|Q9ZQE4 (Q9ZQE4) Copia-like retroelement pol
polyprotein, partial (4%)
Length = 919
Score = 78.2 bits (191), Expect = 1e-14
Identities = 40/108 (37%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Frame = +1
Query: 493 ETPSLSTIKFDCTYCKLGKSKILPFPNHQS-NISQTFDMIHSDLWGITPVISHANYKYFV 551
+ P ++ + C C++GK FP +S + + ++H DL + + +H + YF+
Sbjct: 298 DLPIMNILDGVCDTCEIGKKHRESFPTGKSWRMKKLLKIVHLDLCTVE-IPTHGDNNYFI 474
Query: 552 TFIDDFSRFTWVYFLRSKDEVFSAFKFFHAYVETQFSSKIKILRSDNG 599
TFIDDFS+ WVYFL+ K E +AFK F A+ E Q K+K L D G
Sbjct: 475 TFIDDFSKKMWVYFLKQKSEACNAFKMFKAFAEKQNGCKVKALIIDKG 618
>CO984748
Length = 810
Score = 68.2 bits (165), Expect = 1e-11
Identities = 46/177 (25%), Positives = 78/177 (43%), Gaps = 33/177 (18%)
Frame = -2
Query: 334 SSPWYFDYGASNHMANNAEALTNITQNFGNLKIQVANGNHLPITA--------IGDISTS 385
S WY +YGA++H+ + + L N GN ++ + NG LPIT ++ +
Sbjct: 575 SQNWYINYGATHHVTASPQNLMNEVPTSGNEQVFLGNGQGLPITGSTVFNSPFASNVKLT 396
Query: 386 LNDVYVSPGLTSNLIFVGQLVDNDCRVAFSKSGCLVQDQHSGKLIARGP----------- 434
LN++ P +T NL+ V ++ F S C+V+ Q G ++ RG
Sbjct: 395 LNNLLHVPHITKNLVSVS*FAKDNVFFEFHSSHCVVKSQVDGSILLRGALSQDGLYVFSN 216
Query: 435 --------KVGR------LFPLCFSMSPCSSLPFVSCHSATVVNFELWHKRLGHPNS 477
VG+ + L S C+++ + +++ LWH RLGHP+S
Sbjct: 215 LLNSSFKFTVGKAAANVHMSSLSDLSSHCNNVSTSALNTSNYSLVSLWHNRLGHPSS 45
>BI701169
Length = 407
Score = 62.4 bits (150), Expect(2) = 2e-10
Identities = 31/51 (60%), Positives = 34/51 (65%)
Frame = +2
Query: 550 FVTFIDDFSRFTWVYFLRSKDEVFSAFKFFHAYVETQFSSKIKILRSDNGG 600
F FIDDFSR TWVYF + K EVF FK F A VE + KIK +RSD GG
Sbjct: 113 FFLFIDDFSRKTWVYFFKHKLEVFENFKKFKAIVEKESGFKIKAMRSDRGG 265
Score = 21.9 bits (45), Expect(2) = 2e-10
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +1
Query: 628 PTKWRGRKKK 637
PTKW GRK++
Sbjct: 343 PTKWSGRKEE 372
>BI784757
Length = 430
Score = 64.3 bits (155), Expect = 2e-10
Identities = 37/113 (32%), Positives = 56/113 (48%)
Frame = +1
Query: 488 VLGNKETPSLSTIKFDCTYCKLGKSKILPFPNHQSNISQTFDMIHSDLWGITPVISHANY 547
VLG + S + C CK +S N + ++I+SD+ G S
Sbjct: 28 VLGLPQIKPPSEVCDGCLQCKQSRSTFKQ--NVPIRAKEKLEVIYSDVCGPMQTESLGGN 201
Query: 548 KYFVTFIDDFSRFTWVYFLRSKDEVFSAFKFFHAYVETQFSSKIKILRSDNGG 600
+YF++FID+ +R WVY +R K + F F+ F + Q S IKILR++ GG
Sbjct: 202 RYFISFIDELTRKVWVYLIRRKSDFFEVFEKFKNMAKKQSGSLIKILRTNGGG 360
>TC207859
Length = 751
Score = 62.0 bits (149), Expect = 9e-10
Identities = 43/115 (37%), Positives = 60/115 (51%), Gaps = 3/115 (2%)
Frame = +1
Query: 453 PFVSCHSATVVNFELWHKRLGHPNSNVLYELLQSGVLGNKETPSLSTIK-FDCTYCKLGK 511
P V+C S ++ EL H L HP+ N L+ L+ PS+S IK C LGK
Sbjct: 439 PLVACVST--ISPELAH*HLHHPSLNKLHLLV----------PSVSIIKSLQCESYLLGK 582
Query: 512 SKILPFPNH-QSNISQTFDMIHSDLWGITPVISHANYKYFVTFIDD-FSRFTWVY 564
H +++ F ++HSD+WG++ V Y YFVTFIDD F + TWV+
Sbjct: 583 HVCHTCSPHVNKHVASPFALVHSDIWGLSCVYLTLGYFYFVTFIDDFFLKCTWVF 747
>TC233180 similar to UP|Q944K0 (Q944K0) At1g18030/T10F20_3, partial (11%)
Length = 916
Score = 62.0 bits (149), Expect = 9e-10
Identities = 48/152 (31%), Positives = 73/152 (47%), Gaps = 12/152 (7%)
Frame = +2
Query: 340 DYGASNHMANNAEALTNITQNFGNLKIQVANGNHLPITAIGDI----STSLNDVYVSPGL 395
D G ++HM ++ ++ T GN I VANG+H+PI G+I S LN+V P L
Sbjct: 461 DSGVTDHMTPHSSYFSSYTFLIGNQHIIVANGSHIPIIGCGNIQLQSSLHLNNVLYVPKL 640
Query: 396 TSNLIFVGQLV-DNDCRVAFSKSGCLVQDQHSGKLIARGPKVGRLFPL-------CFSMS 447
++NL+ + ++ D +C V F S C+ D G++I + G L+ L C
Sbjct: 641 SNNLLSIHKIT*DLNCVVTFFHSHCVF*DLAMGRMIGIAKE*GGLYYLQHEDNKECTR*K 820
Query: 448 PCSSLPFVSCHSATVVNFELWHKRLGHPNSNV 479
+S S + L HK LGHP +V
Sbjct: 821 ALTSNHQTSSEPWSSSQIWLQHKCLGHPPFSV 916
>BI425191 weakly similar to GP|14586969|gb| pol polyprotein {Citrus x
paradisi}, partial (7%)
Length = 423
Score = 58.5 bits (140), Expect = 1e-08
Identities = 27/76 (35%), Positives = 43/76 (56%)
Frame = +3
Query: 525 SQTFDMIHSDLWGITPVISHANYKYFVTFIDDFSRFTWVYFLRSKDEVFSAFKFFHAYVE 584
+Q +++H+D+ V S +YF+TFIDD+S + +VY L K + + VE
Sbjct: 93 TQLLEIMHTDICRPFDVNSFGKERYFITFIDDYSHYGYVYLLHEKFQAVDVLEIHLNEVE 272
Query: 585 TQFSSKIKILRSDNGG 600
Q K+K++RSD GG
Sbjct: 273 RQLDRKVKVVRSDRGG 320
>BI424202
Length = 421
Score = 57.0 bits (136), Expect = 3e-08
Identities = 38/127 (29%), Positives = 63/127 (48%), Gaps = 1/127 (0%)
Frame = -3
Query: 467 LWHKRLGHPNSNVLYELLQSGVLGNKETPSLSTIKFDCTYCK-LGKSKILPFPNHQSNIS 525
LWH+RLGH + + L+ GVL + T DC K KSK S
Sbjct: 377 LWHRRLGHISIERIKRLVNEGVLSTLDFADFETY-VDCIKGKQTNKSK-----KGAKRSS 216
Query: 526 QTFDMIHSDLWGITPVISHANYKYFVTFIDDFSRFTWVYFLRSKDEVFSAFKFFHAYVET 585
++IH+D+ P + + KYF+TFIDD+SR+ ++YF+ + ++ + KF +
Sbjct: 215 NLLEIIHTDI--CCPDMDANSLKYFITFIDDYSRYMYLYFI-LRMKL*MSLKFLRLKLRN 45
Query: 586 QFSSKIK 592
+K++
Sbjct: 44 NVENKLR 24
Score = 40.8 bits (94), Expect = 0.002
Identities = 20/39 (51%), Positives = 24/39 (61%)
Frame = -2
Query: 562 WVYFLRSKDEVFSAFKFFHAYVETQFSSKIKILRSDNGG 600
+V L SK+E FK F A VE Q +IKI+RSD GG
Sbjct: 117 YVSLLHSKNEALDVFKVFKAEVEKQCGKQIKIMRSDRGG 1
>TC213393 weakly similar to UP|Q850H8 (Q850H8) Gag-pol polyprotein
(Fragment), partial (23%)
Length = 678
Score = 51.6 bits (122), Expect = 1e-06
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Frame = -2
Query: 504 CTYCKLGKSKILPFPNHQSNISQ-TFDMIHSDLWGITPVISHANYKYFVTFIDDFSRFTW 562
C C+ GK FP + F ++HSD+WG+ + +YFVTFI+D+S TW
Sbjct: 347 CESCQFGKHVQSSFPYCVICRDRFPFVLVHSDVWGLCHGMPTLESRYFVTFIEDYS*QTW 168
Query: 563 VYFLRSKDEVFSAFKFFHAYVE 584
++ + ++ E+F F F+ ++
Sbjct: 167 LFLMVNRSELF*IFTSFYQEIK 102
>BF595216
Length = 421
Score = 48.9 bits (115), Expect = 8e-06
Identities = 19/39 (48%), Positives = 26/39 (65%)
Frame = +2
Query: 533 SDLWGITPVISHANYKYFVTFIDDFSRFTWVYFLRSKDE 571
SDL P +S Y Y+VTF+D F+R+TW++ LR K E
Sbjct: 8 SDLCSPAPFVSSTGYSYYVTFVDAFTRYTWIFLLRHKSE 124
>BI425007 similar to SP|Q9BBS8|RPOC_ DNA-directed RNA polymerase beta' chain
(EC 2.7.7.6). {Lotus japonicus}, partial (9%)
Length = 428
Score = 48.5 bits (114), Expect = 1e-05
Identities = 23/50 (46%), Positives = 32/50 (64%)
Frame = +3
Query: 548 KYFVTFIDDFSRFTWVYFLRSKDEVFSAFKFFHAYVETQFSSKIKILRSD 597
KY + +DD + +TWVYFL+ K+E F F VE ++ +KIK LRSD
Sbjct: 282 KYVMVLVDDST*YTWVYFLKEKNEAIKKFVIFSNMVEKEY-AKIKCLRSD 428
>BQ296988 similar to GP|21740616|em OSJNBb0089K24.12 {Oryza sativa (japonica
cultivar-group)}, partial (1%)
Length = 408
Score = 47.8 bits (112), Expect = 2e-05
Identities = 30/129 (23%), Positives = 61/129 (47%), Gaps = 7/129 (5%)
Frame = -1
Query: 66 AWIIRFVDPNIVLNLRPFSTAAKMWAYLKKIYNQNNTARRFQLEHDIAIFQQEILSISEF 125
+WI+ V+P+I ++ A+ +W LK+ ++Q + R +++ +I Q S++ F
Sbjct: 387 SWILNSVEPSISRSIVFMDNASDVWLDLKERFSQGDLVRVSEIQQEIYALTQGTRSVTTF 208
Query: 126 YSQFMNLWAD---YTDI----VYGSVSTEGLTSVQTVHETTK*DQFLMKLRSDFEGIRTN 178
YS LW + Y I + S + + + H T +FL L +F +++
Sbjct: 207 YSDKKALWEELEIYMPIPNCTCHHRCSCDAMRLARRHHHTLHVMRFLTGLNDEFNAVKSQ 28
Query: 179 LMNRATVPS 187
++ +PS
Sbjct: 27 ILLIEPLPS 1
>AI442763
Length = 426
Score = 47.4 bits (111), Expect = 2e-05
Identities = 51/161 (31%), Positives = 68/161 (41%), Gaps = 6/161 (3%)
Frame = -2
Query: 422 QDQHSGKLIARGPKVGRLF---PLCFSMSPCSSLPFVSCHSATVVNFELWHKRLGHPNSN 478
+D+ G +I G K L+ PL +SP S EL H L HP+ N
Sbjct: 410 KDRRLG*MIGAGHKSRGLY*LSPLVAWVSPISP--------------ELAH*HLPHPSFN 273
Query: 479 VLYELLQSGVLGNKETPSLSTIKF-DCTYCKLGKSKILPFPNH-QSNISQTFDMIHSDLW 536
L+ PS+S IK C LGK H ++ F ++ S++W
Sbjct: 272 KXPLLV----------PSVSIIKSPQCESDLLGKHVCQTCSPHVNKHVGSPFALVPSEIW 123
Query: 537 GITPVISHANYKYFVTFIDD-FSRFTWVYFLRSKDEVFSAF 576
G + V Y YFV IDD F + TWV FL K +VF F
Sbjct: 122 GFSWVYLTLGYFYFVPLIDDFFLKRTWV-FLMKKCDVFFLF 3
>AI901012
Length = 410
Score = 46.2 bits (108), Expect = 5e-05
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 13/116 (11%)
Frame = +1
Query: 529 DMIHSDLWGITPVISHANYKYFVTFIDDFSRFTW---------VYFLRSKDEVFS----A 575
+++HS++WG + ++S ++Y+VTFIDDFSR T + SK + S A
Sbjct: 76 NIVHSNIWGHSCILSILGFRYYVTFIDDFSRHTXTLLNERMF*IVLCISKVVLKSIPNLA 255
Query: 576 FKFFHAYVETQFSSKIKILRSDNGGGKVHI*FDSRFFENKWYFISKVMSFHSPTKW 631
KF V Q ++ + F F++ WY ++S H+ TKW
Sbjct: 256 IKFVLCIVTMQENTFL---------------FFFHFYDLSWYDPPVLLSPHTATKW 378
>CO981879
Length = 576
Score = 34.7 bits (78), Expect(2) = 7e-04
Identities = 15/26 (57%), Positives = 18/26 (68%)
Frame = -1
Query: 574 SAFKFFHAYVETQFSSKIKILRSDNG 599
S FK F ++TQF KIK+ RSDNG
Sbjct: 573 SIFKTFFQMIQTQFQVKIKVFRSDNG 496
Score = 26.9 bits (58), Expect(2) = 7e-04
Identities = 11/23 (47%), Positives = 15/23 (64%)
Frame = -3
Query: 615 KWYFISKVMSFHSPTKWRGRKKK 637
KW+ SK++ HS TKW G +K
Sbjct: 454 KWHNSSKLLC*HSTTKWSG*TEK 386
>CO981347
Length = 624
Score = 40.8 bits (94), Expect = 0.002
Identities = 17/33 (51%), Positives = 22/33 (66%)
Frame = +3
Query: 541 VISHANYKYFVTFIDDFSRFTWVYFLRSKDEVF 573
V +H YF+T IDDFSR W+Y L++K E F
Sbjct: 12 VKTHGGSSYFLTIIDDFSRRVWLYVLKNKSESF 110
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.331 0.141 0.457
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,806,962
Number of Sequences: 63676
Number of extensions: 618710
Number of successful extensions: 4278
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 4130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4242
length of query: 733
length of database: 12,639,632
effective HSP length: 104
effective length of query: 629
effective length of database: 6,017,328
effective search space: 3784899312
effective search space used: 3784899312
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 63 (28.9 bits)
Lotus: description of TM0016.5