TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0016.10
         (196 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC205847 homologue to UP|Q6X7J9 (Q6X7J9) WOX4 protein (At1g46480...    28  2.1
AW394855 similar to GP|18087583|gb| AT4g35250/F23E12_190 {Arabid...    28  2.7
TC209612                                                               27  4.6
NP005445 cytochrome oxidase subunit I                                  27  6.0
CF920492                                                               27  6.0
TC218177 similar to PIR|T52422|T52422 alternative oxidase-relate...    27  6.0
TC229035 weakly similar to UP|Q8LP23 (Q8LP23) Rhamnosyl transfer...    27  7.9
TC231015 weakly similar to UP|Q8S9J7 (Q8S9J7) AT5g65760/MPA24_11...    27  7.9
TC217349                                                               27  7.9

>TC205847 homologue to UP|Q6X7J9 (Q6X7J9) WOX4 protein (At1g46480), partial
           (43%)
          Length = 926

 Score = 28.5 bits (62), Expect = 2.1
 Identities = 15/43 (34%), Positives = 25/43 (57%)
 Frame = +3

Query: 37  VGGKEIQSIEAPGVCNTLSIGPSNENMAQFDLPSLAKPKITSK 79
           +G K ++ + AP + NT +I P +  +  FDL S  KP+  S+
Sbjct: 72  LGCKRLRPL-APKLSNTDTISPPHHPVTTFDLKSFIKPESASR 197


>AW394855 similar to GP|18087583|gb| AT4g35250/F23E12_190 {Arabidopsis
           thaliana}, partial (13%)
          Length = 181

 Score = 28.1 bits (61), Expect = 2.7
 Identities = 16/38 (42%), Positives = 19/38 (49%)
 Frame = +1

Query: 97  GPNVWIRNPSEHNQHNRVGASGKDTNNLASSTGEQGAL 134
           G   W R PSE NQH+  G S  D     S+TG +  L
Sbjct: 1   GCEFWAREPSESNQHSGEG-SDWDPGKADSATGTRRML 111


>TC209612 
          Length = 916

 Score = 27.3 bits (59), Expect = 4.6
 Identities = 10/39 (25%), Positives = 25/39 (63%)
 Frame = +3

Query: 140 TKRLSPNVELYQNATFSLTQNSSLIENTVISPPASDTDA 178
           T ++  N+ELYQ++++++  N   +EN  +  P ++ ++
Sbjct: 258 TTKVQQNLELYQSSSWNMVLNFLKLENNELVEPNANAES 374


>NP005445 cytochrome oxidase subunit I
          Length = 1584

 Score = 26.9 bits (58), Expect = 6.0
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 152  NATFSLTQNSSLIENTVISPPASDTDADLP 181
            N  +++ QNS+ +E  V SPPA  T  +LP
Sbjct: 1462 NIPWAVEQNSTTLEWLVQSPPAFHTFGELP 1551


>CF920492 
          Length = 623

 Score = 26.9 bits (58), Expect = 6.0
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 56  IGPSNENMAQFDLPSLAKPKITSKYVKPNVWVRGMI 91
           +G  N+    + L  ++ PK+  K+    VW+RG I
Sbjct: 373 LGSKNQKGGPYFLLPVSIPKVGEKFEYRKVWIRGFI 480


>TC218177 similar to PIR|T52422|T52422 alternative oxidase-related protein
           IMMUTANS [validated] - Arabidopsis thaliana {Arabidopsis
           thaliana;} , partial (70%)
          Length = 1084

 Score = 26.9 bits (58), Expect = 6.0
 Identities = 14/43 (32%), Positives = 20/43 (45%)
 Frame = -1

Query: 100 VWIRNPSEHNQHNRVGASGKDTNNLASSTGEQGALSVGTSTKR 142
           VWIR   E +   R   +  +   +A+  GE+G L V    KR
Sbjct: 193 VWIRE*EEESGLGRGEEAKSEEEKIAAMFGEEGTLCVSIELKR 65


>TC229035 weakly similar to UP|Q8LP23 (Q8LP23) Rhamnosyl transferase, partial
           (36%)
          Length = 638

 Score = 26.6 bits (57), Expect = 7.9
 Identities = 15/43 (34%), Positives = 24/43 (54%), Gaps = 3/43 (6%)
 Frame = -2

Query: 102 IRNPSEHNQHNRVGASGKDTNNL---ASSTGEQGALSVGTSTK 141
           +RN S   +HN    +GK +N+L   +SST   G+ + G  +K
Sbjct: 358 LRNVSLPKEHNMTDLAGKPSNHLDHFSSSTSVDGSGTSGPDSK 230


>TC231015 weakly similar to UP|Q8S9J7 (Q8S9J7) AT5g65760/MPA24_11, partial
           (29%)
          Length = 720

 Score = 26.6 bits (57), Expect = 7.9
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 99  NVWIRNPSEHNQHNRVGAS 117
           NVWI +P   +QH+ +G+S
Sbjct: 611 NVWILHPEPSSQHSSIGSS 555


>TC217349 
          Length = 1471

 Score = 26.6 bits (57), Expect = 7.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 106 SEHNQHNRVGASGKDTNNL 124
           ++HN HN+ G +GK T NL
Sbjct: 569 NQHNHHNQHGETGKKTINL 625


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.310    0.130    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,405,755
Number of Sequences: 63676
Number of extensions: 105202
Number of successful extensions: 359
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of query: 196
length of database: 12,639,632
effective HSP length: 92
effective length of query: 104
effective length of database: 6,781,440
effective search space: 705269760
effective search space used: 705269760
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 56 (26.2 bits)