BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0014.4
(568 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC231922 58 1e-08
BE610670 57 3e-08
CA851073 57 3e-08
CO986021 55 8e-08
BG404993 52 9e-07
CF921567 50 2e-06
TC233392 49 5e-06
TC231904 similar to GB|AAL25568.1|16648753|AY058152 AT5g16150/T2... 44 1e-04
TC231841 44 2e-04
TC222789 44 3e-04
TC233777 42 7e-04
TC213899 41 0.001
AW759155 40 0.004
AW423846 40 0.004
TC233587 39 0.005
TC213061 39 0.006
TC210729 similar to UP|Q7QHL7 (Q7QHL7) AgCP7056 (Fragment), part... 39 0.006
CO979823 39 0.008
CD394161 37 0.018
BU548736 37 0.018
>TC231922
Length = 803
Score = 58.2 bits (139), Expect = 1e-08
Identities = 47/205 (22%), Positives = 82/205 (39%), Gaps = 17/205 (8%)
Frame = -3
Query: 139 VRIWEDNWLPNGSPIKFPQEVGDEQRLVRVADLFLPNHGG-----------WNTPLVE*T 187
++ W+D+WL G ++ Q+ + R +L + G W L +
Sbjct: 681 IKFWQDSWLSEGCNLQ--QKYNQLYTISRQ*NLTISKMGKFSQNARSWEFKWRRRLFDYE 508
Query: 188 F-----FPTMVARILVTLIRHQDVVDCLFWMGTVDDVYTVKTGYEWH*QLENQNCPSSSN 242
+ F ++ I + H D +FW VY+ K+ Y L P+ S
Sbjct: 507 YAMAVDFMNEISGISIQNQAH----DSMFWKADSSGVYSTKSAYRL---LMPSISPAPSR 349
Query: 243 EVGLEPAQWEFFWKAPSFPRVREVAWRVCTWAVPVRVKLHRRGVDV-DPSYPLCGLEDEI 301
+ ++ W PR +WR+ +P R L RR + + D PLCG + E
Sbjct: 348 RI------FQILWHLKIPPRAAVFSWRLFLDRLPTRGNLSRRSIPIQDIMCPLCGCQHEE 187
Query: 302 VEHLFMSCNVSRGCWFARNLGLRLL 326
HLF C +++G W+ +R++
Sbjct: 186 AGHLFFHCKMTKGLWWESMRWIRVI 112
>BE610670
Length = 368
Score = 56.6 bits (135), Expect = 3e-08
Identities = 34/117 (29%), Positives = 49/117 (41%), Gaps = 2/117 (1%)
Frame = -2
Query: 203 HQDVVDCLFWMGTVDDVYTVKTGYEWH*QLENQNCPSSSNEVGLEPAQWEFFWKAPSFPR 262
H +D L W Y+ K+ Y N E + + W PR
Sbjct: 328 HLSSLDSLIWRADPSGAYSTKSAY---------NLLKGEGSFDNEDSASKIIWNLKIPPR 176
Query: 263 VREVAWRVCTWAVPVRVKLHRRGVDVDPSY--PLCGLEDEIVEHLFMSCNVSRGCWF 317
+WR+ +P + L RR V++ PSY PLC LE+E V H+ SC +R W+
Sbjct: 175 TIAFSWRIFKNRLPTKANLRRRQVEL-PSYRCPLCDLEEENVGHIMFSCTRTRSLWW 8
>CA851073
Length = 633
Score = 56.6 bits (135), Expect = 3e-08
Identities = 33/111 (29%), Positives = 50/111 (44%), Gaps = 1/111 (0%)
Frame = +1
Query: 208 DCLFWMGTVDDVYTVKTGYEWH*QLENQNCPSSSNEVGLEPAQWEFFWKAPSFPRVREVA 267
D + W VY+ K+ Y C +E + ++ WK PR +
Sbjct: 28 DTMVWKADPCGVYSTKSAYRIL-----MTCNRHVSEANI----FKTIWKLKIPPRAAVFS 180
Query: 268 WRVCTWAVPVRVKLHRRGVDVDPSY-PLCGLEDEIVEHLFMSCNVSRGCWF 317
WR+ +P R L RR V + + PLCG E E +HLF +C ++RG W+
Sbjct: 181 WRLIKDRLPTRHNLLRRNVSIQENECPLCGYEQEEADHLFFNCKMTRGLWW 333
>CO986021
Length = 900
Score = 55.1 bits (131), Expect = 8e-08
Identities = 34/116 (29%), Positives = 50/116 (42%), Gaps = 1/116 (0%)
Frame = -1
Query: 203 HQDVVDCLFWMGTVDDVYTVKTGYEWH*QLENQNCPSSSNEVGLEPAQWEFFWKAPSFPR 262
HQ + D + W +Y+ K+ Y L N N G + ++ WK PR
Sbjct: 798 HQQLQDSMLWKADPTGIYSTKSAYRL--LLPN-------NRPGQHSSNFKILWKLKIPPR 646
Query: 263 VREVAWRVCTWAVPVRVKLHRRGVDV-DPSYPLCGLEDEIVEHLFMSCNVSRGCWF 317
+WR+ + +R L RR V + D PLCG E HLF C ++ G W+
Sbjct: 645 AELFSWRLFRDRLSIRANLLRRHVALQDIMCPLCGNHQEEAGHLFFHCRMTIGLWW 478
>BG404993
Length = 412
Score = 51.6 bits (122), Expect = 9e-07
Identities = 37/122 (30%), Positives = 53/122 (43%), Gaps = 1/122 (0%)
Frame = -3
Query: 197 LVTLIRHQDVVDCLFWMGTVDDVYTVKTGYEWH*QLENQNCPSSSNEVGLEPAQWEFFWK 256
L T+ +H+ D W Y+ KT YE Q NE G+ W+ K
Sbjct: 359 LSTIQQHE--ADSWTWKADPSGNYSTKTAYELL-----QEAIRGDNEDGIFVQLWKL--K 207
Query: 257 APSFPRVREVAWRVCTWAVPVRVKLHRRGVDVDPSY-PLCGLEDEIVEHLFMSCNVSRGC 315
P P+ WR+ +P +V L RR V++ S PLC +E HLF +CN +
Sbjct: 206 IP--PKAPVFTWRLINDRLPTKVNLRRRQVEISDSLCPLCNNSEEDAAHLFFNCNKTLPF 33
Query: 316 WF 317
W+
Sbjct: 32 WW 27
>CF921567
Length = 686
Score = 50.4 bits (119), Expect = 2e-06
Identities = 26/73 (35%), Positives = 36/73 (48%), Gaps = 1/73 (1%)
Frame = -1
Query: 246 LEPAQWEFFWKAPSFPRVREVAWRVCTWAVPVRVKLHRRGVDVDP-SYPLCGLEDEIVEH 304
+E W PR +WR+ +P R L RR V + S PLC LE+E V H
Sbjct: 617 IEDRVLNIMWSLKIPPRASAFSWRLFKNRLPTRENLKRRQVSLHTYSCPLCDLEEESVNH 438
Query: 305 LFMSCNVSRGCWF 317
LF +C+ +R W+
Sbjct: 437 LFFNCSKTRSLWW 399
>TC233392
Length = 1145
Score = 49.3 bits (116), Expect = 5e-06
Identities = 33/130 (25%), Positives = 56/130 (42%), Gaps = 4/130 (3%)
Frame = -1
Query: 204 QDVVDCLFWMGTVDDVYTVKTGY---EWH*QLENQNCPSSSNEVGLEPAQWEFFWKAPSF 260
Q V D W +++Y+ ++ Y + H + E+Q+ + WK
Sbjct: 668 QQVPDTWVWKHEPNELYSTRSAYKLLQGHLEGEDQD------------GALQDLWKLKIP 525
Query: 261 PRVREVAWRVCTWAVPVRVKLHRRGVDVDPSY-PLCGLEDEIVEHLFMSCNVSRGCWFAR 319
+ AWR+ +P + LHRR V ++ S P C + +E H+F+ CN R W+
Sbjct: 524 AKASIFAWRLIRDRLPTKSNLHRRQVVLEDSLCPFCRIREEDASHIFLECNKIRPLWWES 345
Query: 320 NLGLRLLSGS 329
+R L S
Sbjct: 344 QTWVRSLGVS 315
>TC231904 similar to GB|AAL25568.1|16648753|AY058152 AT5g16150/T21H19_70
{Arabidopsis thaliana;} , partial (17%)
Length = 903
Score = 44.3 bits (103), Expect = 1e-04
Identities = 19/53 (35%), Positives = 29/53 (53%), Gaps = 1/53 (1%)
Frame = +1
Query: 266 VAWRVCTWAVPVRVKLHRRGVDVDPSY-PLCGLEDEIVEHLFMSCNVSRGCWF 317
VAWR+ +P + L RR +D+ S P C ++DE HLF C+ + W+
Sbjct: 277 VAWRLIRDRLPTKSNLRRRQIDISDSLCPFCSIKDETASHLFFECSKIQHLWW 435
>TC231841
Length = 791
Score = 43.9 bits (102), Expect = 2e-04
Identities = 29/109 (26%), Positives = 42/109 (37%), Gaps = 3/109 (2%)
Frame = +3
Query: 212 WMGTVDDVYTVKTGYE--WH*QLENQNCPSSSNEVGLEPAQWEFFWKAPSFPRVREVAWR 269
W YT K+ Y W E Q + +E WK ++ AWR
Sbjct: 75 WKADPSGQYTAKSAYGVLWGEMFEEQ-----------QDGVFEELWKLKLPSKITIFAWR 221
Query: 270 VCTWAVPVRVKLHRRGVDV-DPSYPLCGLEDEIVEHLFMSCNVSRGCWF 317
+ +P R L R+ ++V DP P C +E HLF C+ W+
Sbjct: 222 LIRDRLPTRSNLRRKQIEVDDPRCPFCRSAEESAAHLFFHCSRIAPVWW 368
>TC222789
Length = 954
Score = 43.5 bits (101), Expect = 3e-04
Identities = 24/74 (32%), Positives = 35/74 (46%), Gaps = 1/74 (1%)
Frame = +2
Query: 245 GLEPAQWEFFWKAPSFPRVREVAWRVCTWAVPVRVKLHRRGVDV-DPSYPLCGLEDEIVE 303
G++ +E WK + AWR+ +P +V LHRR + V D S P C +E
Sbjct: 335 GIKDKAFEKLWKLKVPIKYEVFAWRLLRDRLPTKVNLHRRQIQVMDRSCPFCRNVEEDAG 514
Query: 304 HLFMSCNVSRGCWF 317
HLF C+ W+
Sbjct: 515 HLFFHCSKIIPIWW 556
>TC233777
Length = 503
Score = 42.0 bits (97), Expect = 7e-04
Identities = 22/63 (34%), Positives = 33/63 (51%), Gaps = 1/63 (1%)
Frame = +2
Query: 256 KAPSFPRVREVAWRVCTWAVPVRVKLHRRGVDV-DPSYPLCGLEDEIVEHLFMSCNVSRG 314
K PS ++ AWR+ +P R LHRR + + D S P C +E HLF+ C+ +
Sbjct: 20 KVPS--KISVFAWRLLRNRLPTRTNLHRRQLQIIDMSCPFCRCSEEDEAHLFIHCSKIQP 193
Query: 315 CWF 317
W+
Sbjct: 194 LWW 202
>TC213899
Length = 497
Score = 41.2 bits (95), Expect = 0.001
Identities = 21/68 (30%), Positives = 34/68 (49%), Gaps = 1/68 (1%)
Frame = +3
Query: 251 WEFFWKAPSFPRVREVAWRVCTWAVPVRVKLHRRGVD-VDPSYPLCGLEDEIVEHLFMSC 309
+E WK ++ AWR+ +P R+ L +R ++ V+ S P C L +E HLF C
Sbjct: 60 FEELWKLKVP*KIAAFAWRLLKDRLPTRINL*KRQIEMVESSCPFCSLVEESAGHLFFQC 239
Query: 310 NVSRGCWF 317
+ W+
Sbjct: 240 SKIIQVWW 263
>AW759155
Length = 413
Score = 39.7 bits (91), Expect = 0.004
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +3
Query: 261 PRVREVAWRVCTWAVPVRVKLHRRGVDVDPSYPLCGLEDEIVE---HLFMSCNVS 312
P+V + WR+ +P +V L +R + + Y LC E+ E HLF +C +S
Sbjct: 99 PKVSFLLWRIFLDXIPTKVNLQKRQIQLHGQYLLCAFYKEVPEDLSHLFFACPIS 263
>AW423846
Length = 385
Score = 39.7 bits (91), Expect = 0.004
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +3
Query: 268 WRVCTWAVPVRVKLHRRGVDV-DPSYPLCGLEDEIVEHLFMSCNVSRGCWFA 318
WR+ +P + LHRR V++ D + P C ++E HLF +C+ W+A
Sbjct: 39 WRLIRDRLPTKTNLHRRHVEIHDLTCPFCKNKEEDAAHLFFTCSKIMPLWWA 194
>TC233587
Length = 703
Score = 39.3 bits (90), Expect = 0.005
Identities = 18/59 (30%), Positives = 29/59 (48%), Gaps = 3/59 (5%)
Frame = +2
Query: 261 PRVREVAWRVCTWAVPVRVKLHRRGVDVDPSYPLCGLEDEIVE---HLFMSCNVSRGCW 316
P+V + WR+ +P +V L +R + + Y LC E+ E LF +C +S W
Sbjct: 26 PKVSFLLWRIFLDRIPTKVNLQKRQIQLHGQYLLCAFCKEVPEDLSRLFFACPISHNIW 202
>TC213061
Length = 823
Score = 38.9 bits (89), Expect = 0.006
Identities = 27/114 (23%), Positives = 45/114 (38%), Gaps = 1/114 (0%)
Frame = +2
Query: 205 DVVDCLFWMGTVDDVYTVKTGYEWH*QLENQNCPSSSNEVGLEPAQWEFFWKAPSFPRVR 264
D+ D W Y ++ Y ++ + P + +++ WK +V
Sbjct: 119 DIEDQWVWAAESSGSYLARSAY----RVIREGIPEEEQD-----REFKELWKLKVPMKVT 271
Query: 265 EVAWRVCTWAVPVRVKLHRRGVDVDPSY-PLCGLEDEIVEHLFMSCNVSRGCWF 317
AWR+ +P R L R+ V++ PLC DE HLF C+ W+
Sbjct: 272 MFAWRLLKDILPTRDNLRRKRVELHEYVCPLCRSMDESASHLFFHCSKILPIWW 433
>TC210729 similar to UP|Q7QHL7 (Q7QHL7) AgCP7056 (Fragment), partial (5%)
Length = 727
Score = 38.9 bits (89), Expect = 0.006
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 268 WRVCTWAVPVRVKLHRRGVDV-DPSYPLCGLEDEIVEHLFMSCNVSRGCWF 317
WR+ +P R KL RR V V D S P C +++E HLF C + W+
Sbjct: 98 WRLIRDRLPTRHKLQRRQVQVADMSCPFCRVKEENAGHLFFHCTKIQPLWW 250
>CO979823
Length = 853
Score = 38.5 bits (88), Expect = 0.008
Identities = 31/118 (26%), Positives = 44/118 (37%), Gaps = 3/118 (2%)
Frame = -2
Query: 203 HQDVVDCLFWMGTVDDVYTVKTGYE--WH*QLENQNCPSSSNEVGLEPAQWEFFWKAPSF 260
H D W Y+ K+GY W E ++ A + WK
Sbjct: 717 HPQREDKWLWKPEPGGHYSTKSGYHVLWGELTEE-----------IQDADFAEIWKLKIP 571
Query: 261 PRVREVAWRVCTWAVPVRVKLHRRGVDV-DPSYPLCGLEDEIVEHLFMSCNVSRGCWF 317
+ AWR+ +P + L RR V V D PLC +E HLF +C + W+
Sbjct: 570 TKAAVFAWRLVRDRLPTKSNLRRRQVMVQDMVCPLCNNIEEGAAHLFFNCTKTLPLWW 397
>CD394161
Length = 531
Score = 37.4 bits (85), Expect = 0.018
Identities = 15/38 (39%), Positives = 24/38 (62%)
Frame = -1
Query: 289 DPSYPLCGLEDEIVEHLFMSCNVSRGCWFARNLGLRLL 326
D + PLCG E V HLF +CN+++G W+ +R++
Sbjct: 528 DQNCPLCGTALEDVAHLFFNCNLTKGLWWESMRWIRVV 415
>BU548736
Length = 624
Score = 37.4 bits (85), Expect = 0.018
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -2
Query: 267 AWRVCTWAVPVRVKLHRRGVDVDPSY-PLCGLEDEIVEHLFMSCN 310
AWR+ +P R L RR ++++ S+ P C +E HLF +C+
Sbjct: 605 AWRLIMDRLPTRSNLRRRNIEINDSFCPFCRNNEEDAAHLFFNCS 471
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.345 0.155 0.589
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,409,018
Number of Sequences: 63676
Number of extensions: 616200
Number of successful extensions: 7398
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 5217
Number of HSP's successfully gapped in prelim test: 178
Number of HSP's that attempted gapping in prelim test: 1659
Number of HSP's gapped (non-prelim): 5934
length of query: 568
length of database: 12,639,632
effective HSP length: 102
effective length of query: 466
effective length of database: 6,144,680
effective search space: 2863420880
effective search space used: 2863420880
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.6 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0014.4