TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0014.22
         (284 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC214255 weakly similar to UP|Q8S8U2 (Q8S8U2) Ycf1 protein, part...    29  2.8
TC227828                                                               28  3.6
CA936781                                                               28  6.2
TC215417 similar to UP|Q70NW8 (Q70NW8) NADH dehydrogenase subuni...    27  8.1
TC211468 homologue to UP|Q96RT9 (Q96RT9) HBV preS1(21-47) bindin...    27  8.1

>TC214255 weakly similar to UP|Q8S8U2 (Q8S8U2) Ycf1 protein, partial (19%)
          Length = 3445

 Score = 28.9 bits (63), Expect = 2.8
 Identities = 24/91 (26%), Positives = 42/91 (45%), Gaps = 8/91 (8%)
 Frame = +3

Query: 187  KLRIWHKILLHCINQRPKGSSPDYINFCQKAMLFFIQDKRKIC--------LPFFLFSYL 238
            ++ +WH      I  R K +  +Y+ F  K  +F+ +  +K+         +PFFLF  +
Sbjct: 3084 RIMVWH*Y*FTDIYLR*KKNPQNYVFF--KYTIFYGESIKKVSFISI*IAWIPFFLFIRI 3257

Query: 239  KECIRKSITTASIKSAIKYIPFGRLLSDLFI 269
               ++KS     IK    YI   +L+S L +
Sbjct: 3258 NSIVKKSRILK*IK*IQIYIKNSKLVSLLLL 3350


>TC227828 
          Length = 796

 Score = 28.5 bits (62), Expect = 3.6
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = -1

Query: 161 KDETNKALYTTYKPGKSDYKVVDLHPKLRIWHKILLHCINQRPKGSSPDYINFCQ 215
           ++ET +A  +  K G  D         L++ HK    C++QRP  SS D+  FC+
Sbjct: 433 QEETKQA--SRSKSGGGDQVYNAAS*TLQVVHKGNHLCLSQRPYSSSHDHCGFCR 275


>CA936781 
          Length = 401

 Score = 27.7 bits (60), Expect = 6.2
 Identities = 16/54 (29%), Positives = 27/54 (49%), Gaps = 5/54 (9%)
 Frame = +2

Query: 210 YINFCQKAMLFFIQDKRKICLPFFLFSYLKE-----CIRKSITTASIKSAIKYI 258
           Y  + Q A+ FF+   +  C+P F+ S+L       C+   I+ A  K+AI  +
Sbjct: 146 YS*YHQSALFFFLYACKIFCIPLFIVSFLLVASYF*CVLPVIS*AYFKNAISSV 307


>TC215417 similar to UP|Q70NW8 (Q70NW8) NADH dehydrogenase subunit 6, partial
           (11%)
          Length = 796

 Score = 27.3 bits (59), Expect = 8.1
 Identities = 25/76 (32%), Positives = 38/76 (49%), Gaps = 7/76 (9%)
 Frame = -2

Query: 200 NQRPKGSSPDYINFC-QKAMLFFIQDKRK------ICLPFFLFSYLKECIRKSITTASIK 252
           N   K SSP ++ F  Q  +L  +Q+  +      IC PFF F +LK         +S  
Sbjct: 330 NSFNKWSSPFFLRFIPQTQLLLSVQNLSQPFKSFSICSPFFFFLWLK---------SSHI 178

Query: 253 SAIKYIPFGRLLSDLF 268
            AI ++ F ++LS+LF
Sbjct: 177 HAINWL-FQQVLSNLF 133


>TC211468 homologue to UP|Q96RT9 (Q96RT9) HBV preS1(21-47) binding protein
           (Fragment), partial (48%)
          Length = 848

 Score = 27.3 bits (59), Expect = 8.1
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
 Frame = +2

Query: 194 ILLHCINQRPKG----SSPDYINFCQKAMLFFIQDKRKICLPFFLFS 236
           +LLHC  +R +          +N CQK +LFF        L FF FS
Sbjct: 449 LLLHCCGKRNQKRMDVKGEKLLNVCQKELLFFFFS----FLSFFFFS 577


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.322    0.139    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,769,473
Number of Sequences: 63676
Number of extensions: 179460
Number of successful extensions: 865
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of query: 284
length of database: 12,639,632
effective HSP length: 96
effective length of query: 188
effective length of database: 6,526,736
effective search space: 1227026368
effective search space used: 1227026368
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)