BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0013.3
(324 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 228 3e-60
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 227 6e-60
BI317550 weakly similar to GP|9759590|dbj| polyprotein-like {Ara... 164 4e-41
AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza ... 154 5e-38
BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vi... 152 3e-37
CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {V... 135 2e-32
TC234303 weakly similar to UP|Q8W153 (Q8W153) Polyprotein, parti... 125 3e-29
BM307983 124 8e-29
BI787454 weakly similar to GP|21434|emb|CA ORF4 {Solanum tuberos... 120 1e-27
BM527454 weakly similar to GP|27901709|gb| gag-pol polyprotein {... 79 1e-27
BI972503 weakly similar to GP|18378607|gb polyprotein {Oryza sat... 114 8e-26
BM086359 110 1e-24
AI959950 104 6e-23
TC232995 104 6e-23
BQ081067 weakly similar to GP|23495377|dbj orf490 {Oryza sativa ... 74 4e-22
BF596801 weakly similar to GP|29423270|g gag-pol polyprotein {Gl... 101 4e-22
CO983516 98 4e-21
BE211208 98 4e-21
BF068614 similar to GP|27817858|db OJ1081_B12.7 {Oryza sativa (j... 61 3e-20
TC211311 weakly similar to UP|O24587 (O24587) Pol protein, parti... 71 7e-20
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 228 bits (581), Expect = 3e-60
Identities = 118/323 (36%), Positives = 187/323 (57%), Gaps = 1/323 (0%)
Frame = +1
Query: 3 EIAALEKNETWKIVDLPQGVKAIGNKWVYRIKRNADGTLARYKARLVAKGYNQIEGLDYF 62
E+ ++NE W++V P+G IG KW+++ K N +G + R KARLVA+GY QIEG+D+
Sbjct: 3262 ELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFD 3441
Query: 63 DTFSPVAKLTTVRMVLALAAAQNWHLHQLDVDNAFLHGTLDEDVYMNIPAG-VPTMKPNQ 121
+TF+PVA+L ++R++L +A + L+Q+DV +AFL+G L+E+ Y+ P G V P+
Sbjct: 3442 ETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEAYVEQPKGFVDPTHPDH 3621
Query: 122 VCKLQKSLYGLKQASRKWYEKLSSHLRNLGYSQATSDHSLFVKFQDTLFAGLLVYVDDVI 181
V +L+K+LYGLKQA R WYE+L+ L GY + D +LFVK +YVDD++
Sbjct: 3622 VYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIV 3801
Query: 182 LFGNCLAEFQVVKDSLHTAFGIKDLVILKYFLGLEVAHSSLGISLCQRKYCLDLLTETGT 241
G + + + F + + L YFLGL+V I L Q KY +++ + G
Sbjct: 3802 FGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSKYAKNIVKKFGM 3981
Query: 242 LGSKPVSTPLDPSCKLVVNQGEPYSDATAYRRLVGRLLYLTTTRPDISFATQQLSQFMSN 301
+ TP KL ++ D + YR ++G LLYLT +RPDI++A +++ +N
Sbjct: 3982 ENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQAN 4161
Query: 302 PMTDHYKAALRVLRFLKTSPGLG 324
P H R+L+++ + G
Sbjct: 4162 PKISHLNQVKRILKYVNGTSDYG 4230
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 227 bits (578), Expect = 6e-60
Identities = 119/324 (36%), Positives = 189/324 (57%), Gaps = 2/324 (0%)
Frame = +1
Query: 3 EIAALEKNETWKIVDLPQGVKAIGNKWVYRIKRNADGTLARYKARLVAKGYNQIEGLDYF 62
E+ ++NE W++V P+G IG KW+++ K N +G + R KARLVA+GY QIEG+D+
Sbjct: 3259 ELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFD 3438
Query: 63 DTFSPVAKLTTVRMVLALAAAQNWHLHQLDVDNAFLHGTLDEDVYMNIPAGV--PTMKPN 120
+TF+PVA+L ++R++L +A + L+Q+DV +AFL+G L+E+VY+ P G PT P+
Sbjct: 3439 ETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFADPT-HPD 3615
Query: 121 QVCKLQKSLYGLKQASRKWYEKLSSHLRNLGYSQATSDHSLFVKFQDTLFAGLLVYVDDV 180
V +L+K+LYGLKQA R WYE+L+ L GY + D +LFVK +YVDD+
Sbjct: 3616 HVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDI 3795
Query: 181 ILFGNCLAEFQVVKDSLHTAFGIKDLVILKYFLGLEVAHSSLGISLCQRKYCLDLLTETG 240
+ G + + + F + + L YFLGL+V I L Q +Y +++ + G
Sbjct: 3796 VFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSRYAKNIVKKFG 3975
Query: 241 TLGSKPVSTPLDPSCKLVVNQGEPYSDATAYRRLVGRLLYLTTTRPDISFATQQLSQFMS 300
+ TP KL ++ D + YR ++G LLYLT +RPDI++A +++ +
Sbjct: 3976 MENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQA 4155
Query: 301 NPMTDHYKAALRVLRFLKTSPGLG 324
NP H R+L+++ + G
Sbjct: 4156 NPKISHLTQVKRILKYVNGTSDYG 4227
>BI317550 weakly similar to GP|9759590|dbj| polyprotein-like {Arabidopsis
thaliana}, partial (18%)
Length = 421
Score = 164 bits (416), Expect = 4e-41
Identities = 86/140 (61%), Positives = 102/140 (72%)
Frame = -2
Query: 127 KSLYGLKQASRKWYEKLSSHLRNLGYSQATSDHSLFVKFQDTLFAGLLVYVDDVILFGNC 186
KSLYGLKQASRKWYEKL++ L GY Q+ SD+SLF + F LLVYVDD+IL G+
Sbjct: 420 KSLYGLKQASRKWYEKLTNLLLKEGYIQSISDYSLFTLTKGNTFTALLVYVDDIILAGDS 241
Query: 187 LAEFQVVKDSLHTAFGIKDLVILKYFLGLEVAHSSLGISLCQRKYCLDLLTETGTLGSKP 246
+ EF +K+ L AF IK+L LKYFLGLEVAHS LGI++ QRKYCLDLL ++G LG KP
Sbjct: 240 IDEFDRIKNVLDLAFKIKNLGKLKYFLGLEVAHSRLGITISQRKYCLDLLKDSGLLGCKP 61
Query: 247 VSTPLDPSCKLVVNQGEPYS 266
STPLD S KL G PY+
Sbjct: 60 ASTPLDTSIKLHSAAGTPYA 1
>AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza sativa
(japonica cultivar-group)}, partial (10%)
Length = 463
Score = 154 bits (389), Expect = 5e-38
Identities = 75/147 (51%), Positives = 104/147 (70%), Gaps = 2/147 (1%)
Frame = -3
Query: 3 EIAALEKNETWKIVDLPQGVKAIGNKWVYRIKRNADGTLARYKARLVAKGYNQIEGLDYF 62
E+ E+N WK+V+ P+ IG KWV+R K + G + R KARLVAKGYNQ EG+DY
Sbjct: 446 ELNQFERNNVWKLVEKPENYPVIGTKWVFRNKLDEHGIIIRNKARLVAKGYNQEEGIDYE 267
Query: 63 DTFSPVAKLTTVRMVLALAAAQNWHLHQLDVDNAFLHGTLDEDVYMNIPAG--VPTMKPN 120
+T++PVA+L +RM+LA + N+ L+Q+DV +AFL+G + E+VY+ P G +P KP
Sbjct: 266 ETYAPVARLEVIRMLLAYVSIMNFKLYQMDVKSAFLNGLIQEEVYVEQPPGFEIPD-KPT 90
Query: 121 QVCKLQKSLYGLKQASRKWYEKLSSHL 147
V KLQK+LYGLKQA R WYE++S+ L
Sbjct: 89 HVYKLQKALYGLKQAPRAWYERISNFL 9
>BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vinifera},
partial (34%)
Length = 407
Score = 152 bits (383), Expect = 3e-37
Identities = 76/130 (58%), Positives = 92/130 (70%), Gaps = 1/130 (0%)
Frame = -2
Query: 16 VDLPQGVKAIGNKWVYRIKRNADGTLARYKARLVAKGYNQIEGLDYFDTFSPVAKLTTVR 75
V LP G +G +WVY +K G + R KARLVAKGY Q+ G+DY DTFSPVAKLTTVR
Sbjct: 406 VPLPPGKTPVGCRWVYTVKVGPTGEVDRLKARLVAKGYTQVYGIDYCDTFSPVAKLTTVR 227
Query: 76 MVLALAAAQNWHLHQLDVDNAFLHGTLDEDVYMNIPAG-VPTMKPNQVCKLQKSLYGLKQ 134
+ LA+AA +W LHQLD+ NAFLHG L+ED+YM P G V + VCKL +SLYGLKQ
Sbjct: 226 LFLAMAAICHWPLHQLDIKNAFLHGDLEEDIYMEQPPGFVAQGEYGLVCKLHRSLYGLKQ 47
Query: 135 ASRKWYEKLS 144
+ R W+ K S
Sbjct: 46 SPRAWFGKFS 17
>CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {Vitis
vinifera}, partial (34%)
Length = 409
Score = 135 bits (341), Expect = 2e-32
Identities = 63/109 (57%), Positives = 81/109 (73%)
Frame = +3
Query: 3 EIAALEKNETWKIVDLPQGVKAIGNKWVYRIKRNADGTLARYKARLVAKGYNQIEGLDYF 62
E+ ALE N TW++V LP G +G +WVY +K +G + R KARLVAKGY Q+ G++Y
Sbjct: 78 EMQALENNGTWELVPLPPGKTTVGCRWVYTVKVGPNGKVDRLKARLVAKGYTQVYGIEYC 257
Query: 63 DTFSPVAKLTTVRMVLALAAAQNWHLHQLDVDNAFLHGTLDEDVYMNIP 111
DTFSPV LTTVR+ LA+AA ++W LHQLD+ NAFLHG L+ED+YM P
Sbjct: 258 DTFSPVFFLTTVRLFLAMAAIRHWPLHQLDIKNAFLHGDLEEDIYMEQP 404
>TC234303 weakly similar to UP|Q8W153 (Q8W153) Polyprotein, partial (10%)
Length = 558
Score = 125 bits (313), Expect = 3e-29
Identities = 75/179 (41%), Positives = 100/179 (54%), Gaps = 2/179 (1%)
Frame = +1
Query: 39 GTLARYKARLVAKGYNQIEGLDYFDTFSPVAKLTTVRMVLALAAAQNWHLHQLDVDNAFL 98
GT+ ++KARLVAK Y Q+ G DY TFSPVAK+ V ++ ++A +W L LD NAFL
Sbjct: 28 GTIDQFKARLVAKSYTQVYGQDYTGTFSPVAKMAYVHLLWSMAVVCHWPLF*LDAKNAFL 207
Query: 99 HGTLDEDVYMNIPAGVPTM--KPNQVCKLQKSLYGLKQASRKWYEKLSSHLRNLGYSQAT 156
HG L+E+VYM P G N VC+L +S YGLKQ+ R W + Y
Sbjct: 208 HGYLEEEVYMEQPLGFVAQGESSNMVCQLCRSFYGLKQSPRAWPFLYCG--AAIWYDSHE 381
Query: 157 SDHSLFVKFQDTLFAGLLVYVDDVILFGNCLAEFQVVKDSLHTAFGIKDLVILKYFLGL 215
+DHS+F L+VYVDD+ + G+ +K L F KDL L+YFLG+
Sbjct: 382 ADHSVFYCHSPQGCIYLIVYVDDIGITGSDQHGIT*LK*XLCCQFQTKDLGKLRYFLGI 558
>BM307983
Length = 406
Score = 124 bits (310), Expect = 8e-29
Identities = 64/133 (48%), Positives = 86/133 (64%), Gaps = 2/133 (1%)
Frame = +2
Query: 25 IGNKWVYRIKRNADGTLARYKARLVAKGYNQIEGLDYFDTFSPVAKLTTVRMVLALAAAQ 84
+G +W+Y +K AD TL RYKARLVAKGY Q G+DY +TF+ K AQ
Sbjct: 2 VGCRWIYTVKY*ADDTLDRYKARLVAKGYIQTYGIDYEETFAQWQK*IQSGSSSP*QQAQ 181
Query: 85 -NWHLHQLDVDNAFLHGTLDEDVYMNIPAGVPTMK-PNQVCKLQKSLYGLKQASRKWYEK 142
W +HQ DV NAFLHG+L+E+VYM IP G N+VC+L+K+LYGLKQ+ R W+ +
Sbjct: 182 FGWEMHQFDVKNAFLHGSLEEEVYMEIPPGYGASNGGNKVCRLKKALYGLKQSPRAWFGR 361
Query: 143 LSSHLRNLGYSQA 155
+ + +LGY Q+
Sbjct: 362 FTQAMLSLGYKQS 400
>BI787454 weakly similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, partial
(21%)
Length = 421
Score = 120 bits (300), Expect = 1e-27
Identities = 61/119 (51%), Positives = 79/119 (66%)
Frame = +2
Query: 173 LLVYVDDVILFGNCLAEFQVVKDSLHTAFGIKDLVILKYFLGLEVAHSSLGISLCQRKYC 232
L+VYVDD+++ + +K+ L F KDL LKYFLG+EVA S G+ + QRKY
Sbjct: 65 LMVYVDDIMITKKDATKIVQLKEHLFNHFQTKDLRYLKYFLGIEVAQSGDGVVISQRKYA 244
Query: 233 LDLLTETGTLGSKPVSTPLDPSCKLVVNQGEPYSDATAYRRLVGRLLYLTTTRPDISFA 291
LD+L ETG + V +P+DP+ KL+ Q E Y D YRRLVG+L+YLT TRPDISFA
Sbjct: 245 LDILEETGMQNCRLVDSPMDPNLKLMAYQSEVYPDPERYRRLVGKLIYLTITRPDISFA 421
>BM527454 weakly similar to GP|27901709|gb| gag-pol polyprotein {Vitis
vinifera}, partial (19%)
Length = 437
Score = 79.3 bits (194), Expect(2) = 1e-27
Identities = 36/71 (50%), Positives = 50/71 (69%)
Frame = +1
Query: 236 LTETGTLGSKPVSTPLDPSCKLVVNQGEPYSDATAYRRLVGRLLYLTTTRPDISFATQQL 295
+ TG +P+ + +DP+ KL+ NQG+PYSD+ YR LVG+L+YLT TRP+ISF +
Sbjct: 220 IRHTGMSDCRPIDSLMDPNKKLLPNQGKPYSDSERYRILVGKLIYLTITRPNISFVVGVV 399
Query: 296 SQFMSNPMTDH 306
SQFM +P DH
Sbjct: 400 SQFMQSPHNDH 432
Score = 61.6 bits (148), Expect(2) = 1e-27
Identities = 31/64 (48%), Positives = 42/64 (65%)
Frame = +2
Query: 173 LLVYVDDVILFGNCLAEFQVVKDSLHTAFGIKDLVILKYFLGLEVAHSSLGISLCQRKYC 232
L+VYVDD+++ GN + +K L + F KDL +YFLG+EVA S GI + QRKY
Sbjct: 41 LMVYVDDIVITGNDQGKIAQLKGHLFSHFQTKDLGKFEYFLGIEVAQSKDGIIISQRKYA 220
Query: 233 LDLL 236
LD+L
Sbjct: 221 LDIL 232
>BI972503 weakly similar to GP|18378607|gb polyprotein {Oryza sativa
(japonica cultivar-group)}, partial (5%)
Length = 327
Score = 114 bits (284), Expect = 8e-26
Identities = 56/107 (52%), Positives = 73/107 (67%)
Frame = +2
Query: 184 GNCLAEFQVVKDSLHTAFGIKDLVILKYFLGLEVAHSSLGISLCQRKYCLDLLTETGTLG 243
GN + +K+ L + F KDL LKYFLG+EVA S + + + QRKY LD+L ETG
Sbjct: 5 GNDATKIVQLKEHLFSHFQTKDLGYLKYFLGIEVAQSGVDVVISQRKYALDILEETGMQN 184
Query: 244 SKPVSTPLDPSCKLVVNQGEPYSDATAYRRLVGRLLYLTTTRPDISF 290
+PV +P+DP+ KL+ +Q E Y D YRRLVG+L+YLT TRPDISF
Sbjct: 185 CRPVDSPMDPNLKLMADQSEIYHDPERYRRLVGKLIYLTITRPDISF 325
>BM086359
Length = 427
Score = 110 bits (274), Expect = 1e-24
Identities = 57/112 (50%), Positives = 74/112 (65%)
Frame = +1
Query: 213 LGLEVAHSSLGISLCQRKYCLDLLTETGTLGSKPVSTPLDPSCKLVVNQGEPYSDATAYR 272
LG++VA SS GI + Q KY LD+LTETG L P +TP+DP+ KL+ QGE D
Sbjct: 1 LGIDVAQSSYGIVISQWKYALDILTETGMLDCLPSNTPMDPNVKLLSGQGEALEDPGR*C 180
Query: 273 RLVGRLLYLTTTRPDISFATQQLSQFMSNPMTDHYKAALRVLRFLKTSPGLG 324
LVGRL YLT TR DI+FA LSQF+ +P + A +R+LR++K +PG G
Sbjct: 181 CLVGRLNYLTVTRLDITFAVGVLSQFLKDPTDSQWNATIRILRYIKNAPGPG 336
>AI959950
Length = 466
Score = 104 bits (259), Expect = 6e-23
Identities = 55/126 (43%), Positives = 81/126 (63%), Gaps = 1/126 (0%)
Frame = -1
Query: 3 EIAALEKNETWKIVDLPQGVKAIGNKWVYRIKRNADGTLARYKARLVAKGYNQIEGLDYF 62
E+ +KN K+V LP+ K +G KW++ K + DG + RYKARLVAKGY+Q EG+DY
Sbjct: 379 ELDQFQKNNV*KLVKLPKRKKVVGVKWIFCNKLDEDGKVVRYKARLVAKGYSQQEGIDYP 200
Query: 63 DTFSPVAKLTTVRMVLALAAAQNWHLHQLDVDNAFLHGTLDEDVYMNIPAGVPTMKPNQ- 121
TF+ VA+L + ++L+ A N L+Q+DV +AFL+G + ++VY+ P G +Q
Sbjct: 199 KTFALVARLEVICILLSFATYSNMKLYQMDVKSAFLNGLIQKEVYVEQPPGFENETLHQH 20
Query: 122 VCKLQK 127
V KL K
Sbjct: 19 VFKLNK 2
>TC232995
Length = 1009
Score = 104 bits (259), Expect = 6e-23
Identities = 62/166 (37%), Positives = 94/166 (56%), Gaps = 4/166 (2%)
Frame = +2
Query: 118 KPNQVCKLQKSLYGLKQASRKWYEKLSSHLRNLGYSQATSDHSLFVKFQDTLFAGLLVYV 177
KPN V KLQK+LYGLKQA R WYE+LS+ L +S+ D +LF+K + + +YV
Sbjct: 35 KPNHVYKLQKALYGLKQAPRAWYERLSNFLLEKEFSRGKVDTTLFIKRKHNDILLVQIYV 214
Query: 178 DDVILFG----NCLAEFQVVKDSLHTAFGIKDLVILKYFLGLEVAHSSLGISLCQRKYCL 233
DD+I FG + EF + + + F + + LKYFLGL++ + GI + Q KYC
Sbjct: 215 DDII-FGSTNDSLCKEFSL---DMQSEFEMSMMGELKYFLGLQIKQTQ*GIFINQSKYCK 382
Query: 234 DLLTETGTLGSKPVSTPLDPSCKLVVNQGEPYSDATAYRRLVGRLL 279
+L+ G +K +STP+ +C L ++ D YR +G ++
Sbjct: 383 ELIKRFGMDSAKHMSTPMSTNCYLDKDESGQSIDIKQYRDAIGEVV 520
>BQ081067 weakly similar to GP|23495377|dbj orf490 {Oryza sativa (japonica
cultivar-group)}, partial (18%)
Length = 430
Score = 73.9 bits (180), Expect(2) = 4e-22
Identities = 37/71 (52%), Positives = 49/71 (68%)
Frame = +1
Query: 1 KAEIAALEKNETWKIVDLPQGVKAIGNKWVYRIKRNADGTLARYKARLVAKGYNQIEGLD 60
+A+ AL +N+T + LP G AI KWV+RIK N GTL RY++RLVAKG++ G D
Sbjct: 85 QADFDALMENKTLTLTSLPSGKAAIDCKWVFRIKENLYGTLNRYRSRLVAKGFHLKFGCD 264
Query: 61 YFDTFSPVAKL 71
Y +TFSPV +L
Sbjct: 265 YSETFSPVIEL 297
Score = 48.5 bits (114), Expect(2) = 4e-22
Identities = 19/36 (52%), Positives = 28/36 (77%)
Frame = +3
Query: 73 TVRMVLALAAAQNWHLHQLDVDNAFLHGTLDEDVYM 108
T+R++L +A +W L Q+D++NAFLHG L E+VYM
Sbjct: 300 TIRLILFIALTNHWPLQQVDINNAFLHGLLTEEVYM 407
>BF596801 weakly similar to GP|29423270|g gag-pol polyprotein {Glycine max},
partial (7%)
Length = 336
Score = 101 bits (252), Expect = 4e-22
Identities = 46/91 (50%), Positives = 65/91 (70%)
Frame = +3
Query: 3 EIAALEKNETWKIVDLPQGVKAIGNKWVYRIKRNADGTLARYKARLVAKGYNQIEGLDYF 62
E+ E+N WK+V+ P+ IG KWV+R K + G + R KARLVAKGYNQ EG+DY
Sbjct: 63 ELNQFERNNVWKLVEKPENYPVIGTKWVFRNKLDEHGIIIRNKARLVAKGYNQEEGIDYE 242
Query: 63 DTFSPVAKLTTVRMVLALAAAQNWHLHQLDV 93
+T++PVA+L +RM+LA A+ N+ L+Q+DV
Sbjct: 243 ETYAPVARLEAIRMLLAYASIMNFKLYQMDV 335
>CO983516
Length = 724
Score = 98.2 bits (243), Expect = 4e-21
Identities = 50/118 (42%), Positives = 76/118 (64%), Gaps = 1/118 (0%)
Frame = +2
Query: 65 FSPVAKLTTVRMVLALAAAQNWHLHQLDVDNAFLHGTLDEDVYMNIPAG-VPTMKPNQVC 123
F PVA+L ++R++L +A + L+Q+DV +AFL+G L+E+VY+ P G + P+ V
Sbjct: 365 FHPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFIDPTHPDHVY 544
Query: 124 KLQKSLYGLKQASRKWYEKLSSHLRNLGYSQATSDHSLFVKFQDTLFAGLLVYVDDVI 181
+L+K+LYGLKQA R WYE+L+ L GY + D +LFVK +YVDD++
Sbjct: 545 RLKKALYGLKQAPRAWYERLTELLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIV 718
>BE211208
Length = 413
Score = 98.2 bits (243), Expect = 4e-21
Identities = 56/127 (44%), Positives = 77/127 (60%), Gaps = 1/127 (0%)
Frame = +2
Query: 173 LLVYVDDVILFGNCLAEFQVVKDSLHTAFGIKDLVILKYFLGLEVAHSSLG-ISLCQRKY 231
LLVYVDD+I+ G Q + L++ F +K L L YFLG+EV H+ G + L Q KY
Sbjct: 32 LLVYVDDIIITGRSNYLIQSLVHHLNSNFSLKQLGQLDYFLGIEVHHTPTGSVLLTQSKY 211
Query: 232 CLDLLTETGTLGSKPVSTPLDPSCKLVVNQGEPYSDATAYRRLVGRLLYLTTTRPDISFA 291
DLL +T +KP+S+P+ + +L N + SD T YR +VG L Y T TRP+ISFA
Sbjct: 212 ICDLLHKTDMAEAKPISSPMVTNLRLSKNGDDLLSDPTMYRSVVGALQYPTITRPEISFA 391
Query: 292 TQQLSQF 298
++ QF
Sbjct: 392 ANKVCQF 412
>BF068614 similar to GP|27817858|db OJ1081_B12.7 {Oryza sativa (japonica
cultivar-group)}, partial (3%)
Length = 413
Score = 60.8 bits (146), Expect(2) = 3e-20
Identities = 28/70 (40%), Positives = 44/70 (62%)
Frame = +1
Query: 234 DLLTETGTLGSKPVSTPLDPSCKLVVNQGEPYSDATAYRRLVGRLLYLTTTRPDISFATQ 293
DLL +T ++P+S+P+ SCKL + + + D T Y +VG L Y T TRP+ S++
Sbjct: 202 DLLPKTKMAEAQPISSPMVSSCKLSKSGSDLFQDPTLYGSVVGALQYATLTRPEFSYSVN 381
Query: 294 QLSQFMSNPM 303
++ QFMS P+
Sbjct: 382 KVCQFMSQPL 411
Score = 55.1 bits (131), Expect(2) = 3e-20
Identities = 32/75 (42%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Frame = +2
Query: 158 DHSLFVKFQDTLFAGLLVYVDDVILFGNCLAEFQVVKDSLHTAFGIKDLVILKYFLGLEV 217
D SLFV Q LLVYVDD+ + GNC+ Q + L++ F +K L +L YFLG+EV
Sbjct: 2 DPSLFVYKQQQYTVFLLVYVDDITITGNCVLLIQQLISQLNSQFALKQLGLLDYFLGIEV 181
Query: 218 AH-SSLGISLCQRKY 231
+ GIS + K+
Sbjct: 182 KYLPDKGISCPRLKW 226
>TC211311 weakly similar to UP|O24587 (O24587) Pol protein, partial (15%)
Length = 1213
Score = 71.2 bits (173), Expect(2) = 7e-20
Identities = 45/147 (30%), Positives = 73/147 (49%), Gaps = 4/147 (2%)
Frame = +3
Query: 175 VYVDDVILFGN----CLAEFQVVKDSLHTAFGIKDLVILKYFLGLEVAHSSLGISLCQRK 230
+YVDD+I C F+++KD T+ + LK+ LGL++ GI + Q K
Sbjct: 501 IYVDDIIFGATSKRMCKEFFELMKDGFETSMKGE----LKFLLGLQIIQKVYGIFIHQEK 668
Query: 231 YCLDLLTETGTLGSKPVSTPLDPSCKLVVNQGEPYSDATAYRRLVGRLLYLTTTRPDISF 290
Y L +KP++TP+ S + ++ ++ Y ++ L YLT++RPDI F
Sbjct: 669 YTKSHLKRFRMDEAKPMATPMHRSTIIDKDEKGNHTS*KEYSGMIDSLSYLTSSRPDIVF 848
Query: 291 ATQQLSQFMSNPMTDHYKAALRVLRFL 317
++F S P H A R+LR+L
Sbjct: 849 VVCLCARFQSYPKISHVTAVKRILRYL 929
Score = 43.5 bits (101), Expect(2) = 7e-20
Identities = 21/43 (48%), Positives = 29/43 (66%)
Frame = +2
Query: 124 KLQKSLYGLKQASRKWYEKLSSHLRNLGYSQATSDHSLFVKFQ 166
K +YGLKQA R WYE+LSS L + G+++ +D +LF K Q
Sbjct: 347 KTLSCVYGLKQALRAWYERLSSFLVSNGFTRGITDPALFRKAQ 475
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.321 0.137 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,223,850
Number of Sequences: 63676
Number of extensions: 168631
Number of successful extensions: 744
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of query: 324
length of database: 12,639,632
effective HSP length: 97
effective length of query: 227
effective length of database: 6,463,060
effective search space: 1467114620
effective search space used: 1467114620
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Lotus: description of TM0013.3