BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0012a.8
(719 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CF922341 50 5e-06
BM093788 homologue to GP|13346178|gb| BNLGHi233 {Gossypium hirsu... 43 4e-04
AW318341 42 0.001
TC207508 weakly similar to UP|RL1_COXBU (Q83ET3) 50S ribosomal p... 41 0.002
TC231258 similar to UP|Q886T6 (Q886T6) Sensory box histidine kin... 40 0.003
TC209862 similar to PIR|C86255|C86255 protein F12F1.11 [imported... 40 0.003
TC207027 weakly similar to UP|Q9LW95 (Q9LW95) KED, partial (17%) 40 0.004
TC224876 weakly similar to UP|Q39835 (Q39835) Extensin, partial ... 40 0.004
TC232895 weakly similar to PRF|1604369A.0|226743|1604369A sulfat... 38 0.014
BG881763 38 0.018
TC207742 similar to UP|Q9FYG0 (Q9FYG0) F1N21.15 (At1g67330), par... 38 0.018
TC219514 weakly similar to UP|P93797 (P93797) Pherophorin-S prec... 38 0.018
TC204106 similar to UP|PSAD_NICSY (P29302) Photosystem I reactio... 38 0.018
TC215176 similar to GB|BAC42264.1|26450296|AK117608 GPI-anchored... 38 0.018
TC233861 weakly similar to UP|Q41192 (Q41192) NaPRP3, partial (21%) 37 0.023
TC216813 similar to UP|WR11_ARATH (Q9SV15) Probable WRKY transcr... 35 0.029
TC209975 weakly similar to UP|Q7T9Y7 (Q7T9Y7) Odv-e66, partial (9%) 37 0.031
TC224792 homologue to UP|Q39865 (Q39865) Hydroxyproline-rich gly... 36 0.052
TC205428 weakly similar to UP|Q8L685 (Q8L685) Pherophorin-dz1 pr... 36 0.052
AI748314 similar to GP|9757958|dbj| mitochondrial carrier protei... 36 0.052
>CF922341
Length = 675
Score = 49.7 bits (117), Expect = 5e-06
Identities = 31/137 (22%), Positives = 62/137 (44%), Gaps = 4/137 (2%)
Frame = +1
Query: 81 HLMRSIGNIQQRNEHLQAQLDFYRREQRDDGSREADSVAEFRPFSED----VESVAIPDN 136
HL+ S + +N H+ A++ + + ++G R + ++ + + V ++ P
Sbjct: 250 HLLHSTTS---KNPHVMAEMG--KLDHLEEGLRAIEGGEDYAFANLEELFLVPNIITPPK 414
Query: 137 MKTLVLDSYSGDSDPKDHLLYFNTKMVIIAASDAVKCRMFPSTFKSTAMAWFTTLPRGSI 196
K L D Y G + PK+HL + KM A + + F + A+ W+T L +
Sbjct: 415 FKVLDFDKYKGTTCPKNHLKMYCQKMGAYAKDEELLIHSFQESLTGVAVTWYTNLEPSRV 594
Query: 197 SNFRDFSSKFLVQFSAN 213
+++D F+ Q+ N
Sbjct: 595 HSWKDLMVAFVRQYQYN 645
>BM093788 homologue to GP|13346178|gb| BNLGHi233 {Gossypium hirsutum},
partial (34%)
Length = 427
Score = 43.1 bits (100), Expect = 4e-04
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
Frame = -3
Query: 2 ETRRRKQHHSPMRQRISPPRR---PHRVDLDSPVRTAGVQSP----SHPPSPPPPPSP 52
E RRR ++P +R SP R+ P +L P+R AG P SHPP PPPP P
Sbjct: 254 ERRRRTVENAPQARRTSPLRQELPPSLDELPPPLR*AGPHRPRRGRSHPPPPPPPRQP 81
>AW318341
Length = 439
Score = 41.6 bits (96), Expect = 0.001
Identities = 25/70 (35%), Positives = 31/70 (43%)
Frame = +3
Query: 11 SPMRQRISPPRRPHRVDLDSPVRTAGVQSPSHPPSPPPPPSPSQVGSREHSPGNSPAPEQ 70
SP+ SPP R P + S + P+P P PSQ SR PG+SPA +
Sbjct: 234 SPLFSPASPPPSSARRSTPPPAWASTTSSSATGPTPTAEPCPSQEKSR---PGSSPAGSE 404
Query: 71 QPAVTQEQWR 80
P T WR
Sbjct: 405 PPWATPPTWR 434
>TC207508 weakly similar to UP|RL1_COXBU (Q83ET3) 50S ribosomal protein L1,
partial (35%)
Length = 983
Score = 40.8 bits (94), Expect = 0.002
Identities = 23/65 (35%), Positives = 29/65 (44%)
Frame = +1
Query: 18 SPPRRPHRVDLDSPVRTAGVQSPSHPPSPPPPPSPSQVGSREHSPGNSPAPEQQPAVTQE 77
+PPRRP P+ V P P PPP P P S E P P+ Q A T+E
Sbjct: 151 NPPRRPFE-----PIPIQPVSYPVKPKPPPPEPQPELEPSPEPQSHRPPPPDSQRAWTRE 315
Query: 78 QWRHL 82
R++
Sbjct: 316 DIRYV 330
>TC231258 similar to UP|Q886T6 (Q886T6) Sensory box histidine kinase/response
regulator, partial (3%)
Length = 1374
Score = 40.4 bits (93), Expect = 0.003
Identities = 29/96 (30%), Positives = 38/96 (39%), Gaps = 4/96 (4%)
Frame = +2
Query: 150 DPKDHLLYFN----TKMVIIAASDAVKCRMFPSTFKSTAMAWFTTLPRGSISNFRDFSSK 205
DP HL F+ T D + + FP + + A W L SI N+ D
Sbjct: 575 DPHKHLKEFHIVCSTMKPPDVQEDHIFLKAFPHSLEGVAKDWLYYLAPRSIFNWDDLKRV 754
Query: 206 FLVQFSANKNQPVTINDLYNIRQQEGESLKEYMARY 241
FL +F D+ IRQ ESL EY R+
Sbjct: 755 FLEKFFPASRTTTIRKDISGIRQLSRESLYEYWERF 862
>TC209862 similar to PIR|C86255|C86255 protein F12F1.11 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(40%)
Length = 933
Score = 40.4 bits (93), Expect = 0.003
Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +2
Query: 10 HSPMRQRISPP--RRPH-RVDLDSPVRTAGVQSPSHPPSPPPPPSPSQVGSREHSPGNSP 66
+SP +R S P RR H R + SP SP+ PP PPPPPSP+ G + N P
Sbjct: 83 NSPSSRRPSSPSRRRSHPRTEKSSPT-----SSPAPPPPPPPPPSPATRGGKPARKPNIP 247
>TC207027 weakly similar to UP|Q9LW95 (Q9LW95) KED, partial (17%)
Length = 1005
Score = 40.0 bits (92), Expect = 0.004
Identities = 45/217 (20%), Positives = 93/217 (42%), Gaps = 29/217 (13%)
Frame = +3
Query: 294 DEEDDAFKRKRAKLEK----GDTSPKRVKKDRSGEDKGDGKQQRSGEGKSVFKLTKEQLY 349
D EDD K+++ K EK G T +++KK ED G +++ + K K+ ++
Sbjct: 114 DGEDDEEKKEKKKKEKKDKDGKTDAEKIKKK---EDDGKDDEEKKEKKKKYDKIDAXKVK 284
Query: 350 PRRDD-------------------YEQRRPWQSKSHRQREETDMVMNTDVSDMLRGASDA 390
+ DD E++ + +++E+ D TD +G +D
Sbjct: 285 GKEDDGKDEGNKEKKDKEKGDGDGEEKKEKKDKEKEKKKEKKDKDEETDTLKE-KGKNDE 461
Query: 391 NLVDEPEAPKYHPRDANPKKWCEFHRSAGHDTDDCWTLHREIDKLIR------AGYQGNR 444
++ E K +D K+ + H+ D ++ +++ +R +G +
Sbjct: 462 G--EDDEGNKKKKKDKKEKE--KDHKKEKKDKEEGEKEDSKVEVSVRDIDIEEIKKEGEK 629
Query: 445 QGQWRNSGDQNKAHKREEERADTKGKKKQESAAIATK 481
+ + ++ G + K K++E++ D K KKK+ + TK
Sbjct: 630 EDKGKDGGKEVKEKKKKEDK-DKKEKKKKVTGKDKTK 737
>TC224876 weakly similar to UP|Q39835 (Q39835) Extensin, partial (66%)
Length = 1340
Score = 40.0 bits (92), Expect = 0.004
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = +1
Query: 9 HHSPMRQRISPPRRPHRVDLDSPVRTAGVQSPSHPPSPPPPPSPSQVGSREHSPGNSPAP 68
+HSP SPP++P+ P + P + SPPPPP + P SP P
Sbjct: 229 YHSPPPPSPSPPKKPYYYHSPPPPSPTPPKKPYYYHSPPPPPPKKKPYYYHSPPPPSPPP 408
Query: 69 EQQP 72
++P
Sbjct: 409 PKKP 420
Score = 35.4 bits (80), Expect = 0.089
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +1
Query: 9 HHSPMRQRISPPRRPHRVDLDSPVRTAGVQSPSHPPSPPP--PPSPSQVGSREHSPGNSP 66
+HSP PP++P+ P + + P + SPPP PP P + HSP P
Sbjct: 376 YHSPPPPSPPPPKKPYYYHSPPPPSPSPPKKPYYYHSPPPPSPPPPYKKPYYYHSP---P 546
Query: 67 APEQQP 72
P ++P
Sbjct: 547 PPPKKP 564
Score = 31.6 bits (70), Expect = 1.3
Identities = 26/89 (29%), Positives = 34/89 (37%), Gaps = 16/89 (17%)
Frame = +1
Query: 9 HHSPMRQRISPPRRPHRVDLDSPVRTA-------GVQSPSHPP--------SPPPP-PSP 52
+HSP +PP++P+ P PS PP SPPPP PSP
Sbjct: 280 YHSPPPPSPTPPKKPYYYHSPPPPPPKKKPYYYHSPPPPSPPPPKKPYYYHSPPPPSPSP 459
Query: 53 SQVGSREHSPGNSPAPEQQPAVTQEQWRH 81
+ HSP P P P + + H
Sbjct: 460 PKKPYYYHSP---PPPSPPPPYKKPYYYH 537
Score = 31.2 bits (69), Expect = 1.7
Identities = 14/29 (48%), Positives = 18/29 (61%)
Frame = +2
Query: 45 SPPPPPSPSQVGSREHSPGNSPAPEQQPA 73
SP P PSPS + S SP +SP+P P+
Sbjct: 842 SPLPSPSPSPLPSPSPSPPSSPSPTSTPS 928
Score = 31.2 bits (69), Expect = 1.7
Identities = 18/43 (41%), Positives = 22/43 (50%), Gaps = 1/43 (2%)
Frame = +1
Query: 31 PVRTAGVQSPSHPPSPPPPPSPSQVGSREHS-PGNSPAPEQQP 72
P + V P H PSPPPPP HS P SP+P ++P
Sbjct: 160 PKKYPPVSPPYHYPSPPPPPK-----YYYHSPPPPSPSPPKKP 273
Score = 30.0 bits (66), Expect = 3.7
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +2
Query: 39 SPSHPPSPPPPPSPSQVGSREHSPGNSPAP 68
SP PSP P PSPS SP ++P+P
Sbjct: 842 SPLPSPSPSPLPSPSPSPPSSPSPTSTPSP 931
>TC232895 weakly similar to PRF|1604369A.0|226743|1604369A sulfated surface
glycoprotein SSG185. {Volvox carteri;} , partial (14%)
Length = 907
Score = 38.1 bits (87), Expect = 0.014
Identities = 23/66 (34%), Positives = 29/66 (43%)
Frame = +3
Query: 10 HSPMRQRISPPRRPHRVDLDSPVRTAGVQSPSHPPSPPPPPSPSQVGSREHSPGNSPAPE 69
H+P SPPRR + P + +P P SPPP SP+ SR SP+
Sbjct: 234 HAPPTSPSSPPRR----NTPPPPPSPSSSTPLRPSSPPPTTSPTSRPSRPTPSSPSPSTA 401
Query: 70 QQPAVT 75
PA T
Sbjct: 402 PAPAPT 419
Score = 36.6 bits (83), Expect = 0.040
Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +3
Query: 23 PHRVDLDSPVRTAGVQSPSHPPS---PPPPPSP-SQVGSREHSPGNSPAPEQQPA 73
P RV + R A SPS PP PPPPPSP S R SP + +P +P+
Sbjct: 201 PQRVTSATVSRHAPPTSPSSPPRRNTPPPPPSPSSSTPLRPSSPPPTTSPTSRPS 365
>BG881763
Length = 392
Score = 37.7 bits (86), Expect = 0.018
Identities = 23/64 (35%), Positives = 32/64 (49%)
Frame = -1
Query: 9 HHSPMRQRISPPRRPHRVDLDSPVRTAGVQSPSHPPSPPPPPSPSQVGSREHSPGNSPAP 68
HHS + + P ++ + D P R+AG +P PSPP PP+ V R P + PA
Sbjct: 281 HHSNLASYLRP*QKT-KSDTPQP-RSAGTLAPPC*PSPPSPPTSISVLLRSPEPPSPPAS 108
Query: 69 EQQP 72
E P
Sbjct: 107 EPPP 96
>TC207742 similar to UP|Q9FYG0 (Q9FYG0) F1N21.15 (At1g67330), partial (70%)
Length = 1115
Score = 37.7 bits (86), Expect = 0.018
Identities = 21/57 (36%), Positives = 26/57 (44%), Gaps = 2/57 (3%)
Frame = -2
Query: 18 SPPRRPHRVDLDSPVRTAGVQSPSHPP--SPPPPPSPSQVGSREHSPGNSPAPEQQP 72
SPP PHR + R SPS PP SPP P+P Q ++P P +P
Sbjct: 727 SPPSDPHRARTRASHRIPSCPSPSPPPRISPPCAPAPPQSTPSARRS*SNPTPSHKP 557
>TC219514 weakly similar to UP|P93797 (P93797) Pherophorin-S precursor,
partial (8%)
Length = 654
Score = 37.7 bits (86), Expect = 0.018
Identities = 21/53 (39%), Positives = 25/53 (46%)
Frame = +3
Query: 23 PHRVDLDSPVRTAGVQSPSHPPSPPPPPSPSQVGSREHSPGNSPAPEQQPAVT 75
P +S RT SP+ PPSPPP PSP R P +P+P P T
Sbjct: 153 PRNTKPNSFNRTTTSHSPTSPPSPPPLPSP-----RRRRPRPTPSPNSPPNPT 296
Score = 29.6 bits (65), Expect = 4.9
Identities = 26/71 (36%), Positives = 29/71 (40%), Gaps = 7/71 (9%)
Frame = +3
Query: 5 RRKQHHSPMRQRISPPRRPHRVDLDSPVRTAG--VQSPSHPPSPPPP-----PSPSQVGS 57
R HSP SPP P L SP R SP+ PP+P PP PS S
Sbjct: 183 RTTTSHSPT----SPPSPP---PLPSPRRRRPRPTPSPNSPPNPTPPLPTKIPSSSPPAP 341
Query: 58 REHSPGNSPAP 68
P +S AP
Sbjct: 342 ASAPPRSSTAP 374
>TC204106 similar to UP|PSAD_NICSY (P29302) Photosystem I reaction center
subunit II, chloroplast precursor (Photosystem I 20 kDa
subunit) (PSI-D), partial (74%)
Length = 536
Score = 37.7 bits (86), Expect = 0.018
Identities = 25/59 (42%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Frame = +2
Query: 19 PPRRPHRVDLDSPVRTAGVQSPSH----PPSPPPPPSPSQVGSREHSPGNSPAPEQQPA 73
P PH SPV + P H PPSP PP SPS SRE S + AP Q P+
Sbjct: 38 PLSSPH----PSPVSNPATEPPRHGNNPPPSPSPPRSPS--SSREQSEQHRRAPAQGPS 196
>TC215176 similar to GB|BAC42264.1|26450296|AK117608 GPI-anchored protein
{Arabidopsis thaliana;} , partial (79%)
Length = 1570
Score = 37.7 bits (86), Expect = 0.018
Identities = 24/64 (37%), Positives = 29/64 (44%), Gaps = 3/64 (4%)
Frame = +2
Query: 6 RKQHHSPMRQRISPPRRPH---RVDLDSPVRTAGVQSPSHPPSPPPPPSPSQVGSREHSP 62
R+ P R+R PPRR H R P+RT G+Q P P PS G R SP
Sbjct: 560 RRLRRDPPRRRRPPPRRRHPRHRASHRPPIRTGGLQPPPQPRRHLRRPSRGSAGGR--SP 733
Query: 63 GNSP 66
+ P
Sbjct: 734 YSPP 745
>TC233861 weakly similar to UP|Q41192 (Q41192) NaPRP3, partial (21%)
Length = 438
Score = 37.4 bits (85), Expect = 0.023
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Frame = +2
Query: 18 SPPRRPHRVDLDSPVRTA--GVQSPSHPPSPPPPPSPSQVGSREHSPGNSPAPEQQPAVT 75
SPP+RP SP ++ P PPSPPPPP P S S ++ +
Sbjct: 65 SPPQRPWNWTSTSPSASS*RKPSRPPSPPSPPPPPPPPPRSSNNPSSSSTMTTSTP*RCS 244
Query: 76 QEQWR 80
WR
Sbjct: 245 ARSWR 259
>TC216813 similar to UP|WR11_ARATH (Q9SV15) Probable WRKY transcription
factor 11 (WRKY DNA-binding protein 11), partial (46%)
Length = 1173
Score = 34.7 bits (78), Expect(2) = 0.029
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Frame = +1
Query: 3 TRRRKQHH-----SPMRQRISPPRRPHRVDLDSPVRTAGVQSPSHPPSPPPPPSP 52
+RRR Q H SP+ PP PHR +T P H P P PP +P
Sbjct: 166 SRRRPQGHGTPPPSPLPSTFPPPHSPHRRHRFQLQKTHLPSQPPHRPCPFPPRTP 330
Score = 21.2 bits (43), Expect(2) = 0.029
Identities = 9/31 (29%), Positives = 14/31 (45%)
Frame = +3
Query: 45 SPPPPPSPSQVGSREHSPGNSPAPEQQPAVT 75
S PP P+P S + + P P P ++
Sbjct: 441 STPPTPNPWTSSSLKKPSASPPTPPSCPPLS 533
>TC209975 weakly similar to UP|Q7T9Y7 (Q7T9Y7) Odv-e66, partial (9%)
Length = 537
Score = 37.0 bits (84), Expect = 0.031
Identities = 18/57 (31%), Positives = 27/57 (46%)
Frame = +1
Query: 19 PPRRPHRVDLDSPVRTAGVQSPSHPPSPPPPPSPSQVGSREHSPGNSPAPEQQPAVT 75
PP+ P + P+ + P + P+PP PSPS +P +P+P QP T
Sbjct: 1 PPKTPSPI-YAPPIAPSPGNHPPYVPTPPKTPSPSYSPPNVPTPPKTPSPSSQPPFT 168
Score = 34.3 bits (77), Expect = 0.20
Identities = 19/57 (33%), Positives = 28/57 (48%), Gaps = 1/57 (1%)
Frame = +1
Query: 17 ISPPRRPHRVDLDSPVRTAGVQ-SPSHPPSPPPPPSPSQVGSREHSPGNSPAPEQQP 72
I+P H + +P +T SP + P+PP PSPS +P +P+P QP
Sbjct: 37 IAPSPGNHPPYVPTPPKTPSPSYSPPNVPTPPKTPSPSSQPPFTPTPPKTPSPTSQP 207
>TC224792 homologue to UP|Q39865 (Q39865) Hydroxyproline-rich glycoprotein
(Fragment), partial (86%)
Length = 688
Score = 36.2 bits (82), Expect = 0.052
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = +2
Query: 31 PVRTAGVQSPSHPPSPPPPPSPSQVGSREHSPGNSPAPEQQP 72
P + V P H PSPPPPPSPS + P+P P
Sbjct: 107 PKKYPPVSPPYHYPSPPPPPSPSPPPPYYYKSPPPPSPSPPP 232
Score = 30.4 bits (67), Expect = 2.9
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Frame = +2
Query: 41 SHPPSP-----PPPPSPSQVGSREHSPGNSPAPEQQP 72
SHPP P PPPPSPS ++ P+P P
Sbjct: 389 SHPPPPYHYVSPPPPSPSPPPPYHYTSPPPPSPAPAP 499
>TC205428 weakly similar to UP|Q8L685 (Q8L685) Pherophorin-dz1 protein
precursor, partial (5%)
Length = 720
Score = 36.2 bits (82), Expect = 0.052
Identities = 21/56 (37%), Positives = 26/56 (45%), Gaps = 2/56 (3%)
Frame = -2
Query: 19 PPRRPHRVDLDSPVRTAGVQSPSHPPSPPPPPSPSQVGSREHSPGNS--PAPEQQP 72
PP P V + P+ G P PPSPPPPP P + + G+ P PE P
Sbjct: 347 PPPTPLPVPPNPPIPPVGPPRP--PPSPPPPPKPPPIPAPAPPKGSPLFPIPE*PP 186
>AI748314 similar to GP|9757958|dbj| mitochondrial carrier protein-like
{Arabidopsis thaliana}, partial (17%)
Length = 421
Score = 36.2 bits (82), Expect = 0.052
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = +1
Query: 19 PPRRPHRVDLDSPVRTAGVQSPSHPPSPPPPPSPSQVGSREHSPGNSPAP 68
PP + SP+ +P PSPPPP P S SP + P P
Sbjct: 67 PPNPTNSQSQTSPISLLSSHTPPLSPSPPPPNGPGPPQSPTQSPSSKPFP 216
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.316 0.133 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,943,001
Number of Sequences: 63676
Number of extensions: 484903
Number of successful extensions: 18655
Number of sequences better than 10.0: 722
Number of HSP's better than 10.0 without gapping: 7835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12570
length of query: 719
length of database: 12,639,632
effective HSP length: 104
effective length of query: 615
effective length of database: 6,017,328
effective search space: 3700656720
effective search space used: 3700656720
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Lotus: description of TM0012a.8