BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0011b.6
(189 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CD394161 46 9e-06
TC231841 42 2e-04
CA851073 40 5e-04
CO986021 39 0.001
TC233056 38 0.003
TC210600 similar to UP|Q51534 (Q51534) PilW protein, partial (7%) 37 0.004
TC211809 37 0.004
TC210729 similar to UP|Q7QHL7 (Q7QHL7) AgCP7056 (Fragment), part... 36 0.009
AW595917 35 0.016
CO979823 35 0.021
TC222557 35 0.021
TC211538 35 0.027
TC213061 34 0.035
AW423846 33 0.060
TC212540 33 0.079
TC233392 33 0.079
CD396188 weakly similar to GP|6175788|gb|A ORF144 {Xestia c-nigr... 33 0.079
TC233956 33 0.10
TC222789 32 0.23
TC233199 31 0.30
>CD394161
Length = 531
Score = 46.2 bits (108), Expect = 9e-06
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 13/117 (11%)
Frame = -1
Query: 13 DPGCAICGNEVETMEHLFLEFPMFLGVWFASSLSLRV-------------NLFATVEDFV 59
D C +CG +E + HLF + G+W+ S +RV F D V
Sbjct: 528 DQNCPLCGTALEDVAHLFFNCNLTKGLWWESMRWIRVVGPLPSHQKCHFTQFFEGFGDPV 349
Query: 60 SEMVREGMPEVLAAVQTMLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSGWVRVHE 116
++ +R G LA+ +IW +N L+FQ FD V+ A+ L W + +
Sbjct: 348 NQDIRGGWWIALAS------SIWHHRNNLIFQGSPFDPYKVMDHAIYLLWSWFKAKD 196
>TC231841
Length = 791
Score = 41.6 bits (96), Expect = 2e-04
Identities = 32/121 (26%), Positives = 56/121 (45%), Gaps = 10/121 (8%)
Frame = +3
Query: 2 RSALIQRKVEVD-PGCAICGNEVETMEHLFLEFPMFLGVWFASSLSLRVNLFATVEDFVS 60
RS L ++++EVD P C C + E+ HLF VW+ SLS VNL +
Sbjct: 246 RSNLRRKQIEVDDPRCPFCRSAEESAAHLFFHCSRIAPVWW-ESLSW-VNLLGVFPNHPR 419
Query: 61 EMVREGMPEVLAAVQ---------TMLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSGW 111
+ + + V A ++ + + IW+ +N ++F +F+ +L A+ L W
Sbjct: 420 QHFLQHIYGVTAGMRASRWKWWWLALTWTIWKQRNNMIFSNGTFNANKILDEAIFLIWTW 599
Query: 112 V 112
+
Sbjct: 600 L 602
>CA851073
Length = 633
Score = 40.4 bits (93), Expect = 5e-04
Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 11/126 (8%)
Frame = +1
Query: 2 RSALIQRKVEVDPG-CAICGNEVETMEHLFLEFPMFLGVWFAS----------SLSLRVN 50
R L++R V + C +CG E E +HLF M G+W+ S S+S +
Sbjct: 211 RHNLLRRNVSIQENECPLCGYEQEEADHLFFNCKMTRGLWWESMRWNQIVGPLSVSPASH 390
Query: 51 LFATVEDFVSEMVREGMPEVLAAVQTMLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSG 110
+ F + A+ + +IW+ +N L+FQ F+ V+ A+ L
Sbjct: 391 FVQFCDGFGAGRNHTRWCGWWIALTS---SIWKHRNLLIFQGNQFEPSKVMDDALFLAWS 561
Query: 111 WVRVHE 116
W++V E
Sbjct: 562 WLKVRE 579
>CO986021
Length = 900
Score = 38.9 bits (89), Expect = 0.001
Identities = 32/125 (25%), Positives = 59/125 (46%), Gaps = 9/125 (7%)
Frame = -1
Query: 1 MRSALIQRKVEV-DPGCAICGNEVETMEHLFLEFPMFLGVWFASSLSLRVNLFATVEDFV 59
+R+ L++R V + D C +CGN E HLF M +G+W+ S++ L A ++D
Sbjct: 603 IRANLLRRHVALQDIMCPLCGNHQEEAGHLFFHCRMTIGLWW-ESMNWTRTLGAFLDDPA 427
Query: 60 SEMVR--EGMPEVLAAVQTMLY------AIWESQNGLVFQRMSFDMGWVLAWAVALGSGW 111
+ ++ +G + L+ IW+ +N L+F+ F V+ A+ W
Sbjct: 426 AHFIQFSDGFGAQRNHNRRCLWWIALTSTIWQHRNSLLFKGTPFQPPKVMDDALFHAWTW 247
Query: 112 VRVHE 116
++ E
Sbjct: 246 LKATE 232
>TC233056
Length = 680
Score = 37.7 bits (86), Expect = 0.003
Identities = 35/117 (29%), Positives = 50/117 (41%), Gaps = 9/117 (7%)
Frame = -1
Query: 13 DPGCAICGNEVETMEHLFLEFPMFLGVWFASSLSLRVNLFATVEDFVSEMVRE---GMPE 69
D C C N+ E HLF + L +W+ SLS VNL + + + G
Sbjct: 551 DSLCPFCRNKEEEATHLFFNYSNILPLWW-ESLS*-VNLTTALPQNPRDHYLQHGIGNDH 378
Query: 70 VLAAVQ------TMLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSGWVRVHESPHA 120
A++ + IW+ +N +VFQ SFD +L AV L WV+ E A
Sbjct: 377 GKKAIRWKCWWIALTRTIWQHRNKIVFQNASFDGSKLLDDAVLLIWTWVKSMEKDFA 207
>TC210600 similar to UP|Q51534 (Q51534) PilW protein, partial (7%)
Length = 1093
Score = 37.4 bits (85), Expect = 0.004
Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 10/125 (8%)
Frame = +3
Query: 2 RSALIQRKVEV-DPGCAICGNEVETMEHLFLEFPMFLGVWFASSLSLRV---------NL 51
R+ L R+VE+ D C +C + E HLF L +W+ + + +
Sbjct: 534 RTNLRVRQVELNDSRCPLCNSLEEDAAHLFFPCTKTLPLWWETQSWINSLGAFPHNPKDH 713
Query: 52 FATVEDFVSEMVREGMPEVLAAVQTMLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSGW 111
F ++ ++ VR + T + IW+ +NG+VF SFD V+ A+ L W
Sbjct: 714 FLQHDNSSADGVRARRWKCWWVALT--WVIWKHRNGVVFHNHSFDGSKVMDDAIFLFWSW 887
Query: 112 VRVHE 116
++V E
Sbjct: 888 LKVME 902
>TC211809
Length = 895
Score = 37.4 bits (85), Expect = 0.004
Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 8/122 (6%)
Frame = +2
Query: 8 RKVEV-DPGCAICGNEVETMEHLFLEFPMFLGVWFASSL---SLRVNLFATVEDFVSEMV 63
R+VE+ D C +C + E HLF +W+ + SL + F+
Sbjct: 371 RQVELNDSRCPLCNSSEEDAAHLFFHCTKTEXLWWETQSWVNSLGAFPHNPKDHFLQHDN 550
Query: 64 REGMPEVLAAVQ----TMLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSGWVRVHESPH 119
R + + + IW+ +NG+VF SFD V+ A+ L W++V E
Sbjct: 551 RSAGGVXARRWKCLWVALTWVIWKHRNGVVFHNHSFDGSKVMEDAILLTWSWLKVMEKGF 730
Query: 120 AG 121
G
Sbjct: 731 TG 736
>TC210729 similar to UP|Q7QHL7 (Q7QHL7) AgCP7056 (Fragment), partial (5%)
Length = 727
Score = 36.2 bits (82), Expect = 0.009
Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 11/126 (8%)
Frame = +2
Query: 2 RSALIQRKVEV-DPGCAICGNEVETMEHLFLEFPMFLGVWF----------ASSLSLRVN 50
R L +R+V+V D C C + E HLF +W+ A+ L+ ++N
Sbjct: 128 RHKLQRRQVQVADMSCPFCRVKEENAGHLFFHCTKIQPLWWEAMSWINLKGAAPLTPKMN 307
Query: 51 LFATVEDFVSEMVREGMPEVLAAVQTMLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSG 110
F ++ VR + T ++IW+++N +VF SFD + AV +
Sbjct: 308 -FNQHMGLQADGVRSNRWQCWWMALT--WSIWKTRNSIVFSNASFDANQLFEDAVFILWT 478
Query: 111 WVRVHE 116
W+R +E
Sbjct: 479 WLRNYE 496
>AW595917
Length = 404
Score = 35.4 bits (80), Expect = 0.016
Identities = 27/107 (25%), Positives = 45/107 (41%), Gaps = 9/107 (8%)
Frame = +1
Query: 4 ALIQRKVEV-DPGCAICGNEVETMEHLFLEFPMFLGVWFASSLSLRVNLFATVEDFVSEM 62
A ++R++E+ D C +C N E HLF L W+ SLS + A +D
Sbjct: 82 ANLRRQMEISDSLCPLCNNSKEDATHLFFNCSKTLPFWW-ESLSWVKTVGAFPKDLREHF 258
Query: 63 VREGMPEVLAAVQT--------MLYAIWESQNGLVFQRMSFDMGWVL 101
++ T + IW+ +N LVF+ +F+ V+
Sbjct: 259 LQHNSGNTAGTKATR*RCWWIALTRTIWQHRNKLVFENQTFNASKVM 399
>CO979823
Length = 853
Score = 35.0 bits (79), Expect = 0.021
Identities = 32/125 (25%), Positives = 54/125 (42%), Gaps = 10/125 (8%)
Frame = -2
Query: 2 RSALIQRKVEV-DPGCAICGNEVETMEHLFLEFPMFLGVWFASSLSLRVNLFATVEDFVS 60
+S L +R+V V D C +C N E HLF L +W+ S VNL +
Sbjct: 519 KSNLRRRQVMVQDMVCPLCNNIEEGAAHLFFNCTKTLPLWWESMSW--VNLKTAMPQTPR 346
Query: 61 EMVREGMPEVLAAVQT---------MLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSGW 111
+ + ++ +++ + + IW+ +N +VFQ +F VL A+ L W
Sbjct: 345 QHFLQYGTDIADGLKSKRWKCWWIALTWTIWQHRNKVVFQNATFHGNKVLEDALLLLWSW 166
Query: 112 VRVHE 116
+ E
Sbjct: 165 FKALE 151
>TC222557
Length = 1002
Score = 35.0 bits (79), Expect = 0.021
Identities = 25/112 (22%), Positives = 50/112 (44%), Gaps = 7/112 (6%)
Frame = +1
Query: 16 CAICGNEVETMEHLFLEFPMFLGVWFAS-SLSLRVNLFATV--EDFVSEMVREGMPEVLA 72
C C + E HLF P L +W+ S + + V +F+ + ++++ + + A
Sbjct: 556 CPFCNRQEEEASHLFFNCPRILPLWWESLAWTKTVGVFSPIPRQNYMQHTLISKGKHLQA 735
Query: 73 AVQ----TMLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSGWVRVHESPHA 120
+ + ++IW +N +VF +F+ ++ A+ L W R E A
Sbjct: 736 RWKCWWVALTWSIWRHRNRIVFLNKAFNGSKLMDDAIFLVWSWFRQLEKGFA 891
>TC211538
Length = 987
Score = 34.7 bits (78), Expect = 0.027
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 9/107 (8%)
Frame = +2
Query: 15 GCAICGNEVETMEHLFLEFPMFLGVWFASSLSLRVNLFATVEDFVSEMVREGMPEVLAAV 74
GC C E E+ HLF + + VW+ SLS VNL + + + + V +
Sbjct: 566 GCPFCRAEEESAGHLFFQCSKIIPVWW-ESLSW-VNLSGVFPNHPRQHFLQHIYGVTEGM 739
Query: 75 QT---------MLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSGWV 112
++ + + IW+ +N ++F +F+ +L AV L W+
Sbjct: 740 RSSRWKWWWLALTWTIWKHRNDIIFSNGTFNANRILDDAVFLLWTWL 880
>TC213061
Length = 823
Score = 34.3 bits (77), Expect = 0.035
Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 10/122 (8%)
Frame = +2
Query: 2 RSALIQRKVEV-DPGCAICGNEVETMEHLFLEFPMFLGVWFASSLSLRVNLFATVEDFVS 60
R L +++VE+ + C +C + E+ HLF L +W+ SLS V L
Sbjct: 311 RDNLRRKRVELHEYVCPLCRSMDESASHLFFHCSKILPIWW-ESLSW-VKLVGAFPHHPR 484
Query: 61 EMVREGMPEVLAAVQ---------TMLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSGW 111
+ EV +Q + + IW+ +N ++F +F+ V+ AV L W
Sbjct: 485 HHFHQHSHEVYQGLQGNRWKWWWLALTWTIWKHRNDIIFSNATFNAHKVMDDAVFLIWTW 664
Query: 112 VR 113
R
Sbjct: 665 FR 670
>AW423846
Length = 385
Score = 33.5 bits (75), Expect = 0.060
Identities = 27/104 (25%), Positives = 49/104 (46%), Gaps = 9/104 (8%)
Frame = +3
Query: 2 RSALIQRKVEV-DPGCAICGNEVETMEHLFLEFPMFLGVWFASSLSLRVNLFATVED--- 57
++ L +R VE+ D C C N+ E HLF + +W+A SLS E+
Sbjct: 69 KTNLHRRHVEIHDLTCPFCKNKEEDAAHLFFTCSKIMPLWWA-SLSWTNTTAPFPENPHM 245
Query: 58 -FVSEMVREGMPEVLAAVQ----TMLYAIWESQNGLVFQRMSFD 96
F+ +++R G Q ++ ++IW+ +N +V + F+
Sbjct: 246 HFLQQVLRNGKDTSYQKWQCWWTSLTWSIWQHRNKIVXEEERFN 377
>TC212540
Length = 397
Score = 33.1 bits (74), Expect = 0.079
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +1
Query: 76 TMLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSGWVRVHE 116
T+ ++IW+++N +VF SFD V A+ + W+R +E
Sbjct: 157 TLTWSIWKTRNSIVFSNASFDANKVFEDAIFILWTWLRNYE 279
>TC233392
Length = 1145
Score = 33.1 bits (74), Expect = 0.079
Identities = 31/125 (24%), Positives = 55/125 (43%), Gaps = 10/125 (8%)
Frame = -1
Query: 2 RSALIQRKVEVDPG-CAICGNEVETMEHLFLEFPMFLGVWFASSL---SLRVNLFATVED 57
+S L +R+V ++ C C E H+FLE +W+ S SL V+ +
Sbjct: 473 KSNLHRRQVVLEDSLCPFCRIREEDASHIFLECNKIRPLWWESQTWVRSLGVSPINKRQH 294
Query: 58 FVSEMVREGMPEVLAAVQ------TMLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSGW 111
F+ + G P + + +++W+ +N ++FQ F+ +L AV L W
Sbjct: 293 FLQHV--HGTPGSKRYNRWKTWWIALTWSLWKHRNQVIFQNAQFNGIKLLEDAVFLHWTW 120
Query: 112 VRVHE 116
+R E
Sbjct: 119 IRAME 105
>CD396188 weakly similar to GP|6175788|gb|A ORF144 {Xestia c-nigrum
granulovirus}, partial (5%)
Length = 701
Score = 33.1 bits (74), Expect = 0.079
Identities = 26/121 (21%), Positives = 54/121 (44%), Gaps = 12/121 (9%)
Frame = -1
Query: 5 LIQRKVEVDPG-CAICGNEVETMEHLFLEFPMFLGVWFASSLSLRVNLFA---TVEDFVS 60
LI+R++ + C C ++VE+ HLF + +W+ + +R + +++F+
Sbjct: 545 LIRRQIVLQNDLCPFCQSQVESASHLFFTCHKVMPLWWEFNTWVREDRVLHSKPMDNFLQ 366
Query: 61 EMVREGMPEV--------LAAVQTMLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSGWV 112
G +AA ++ IW +N ++F FD+ ++ A+ L W+
Sbjct: 365 HCSLAGSRNSNRRRKIWWIAATRS----IWNLRNDMIFNNQPFDISKLVDKAIFLTWSWL 198
Query: 113 R 113
R
Sbjct: 197 R 195
>TC233956
Length = 757
Score = 32.7 bits (73), Expect = 0.10
Identities = 28/117 (23%), Positives = 50/117 (41%), Gaps = 8/117 (6%)
Frame = +2
Query: 5 LIQRKVEV-DPGCAICGNEVETMEHLFLEFPMFLGVW--FASSLSLRVNLFATVEDFVSE 61
LI+R+++V D C C ++ ET HLF + +W F S + D +
Sbjct: 251 LIKRQIQVEDDLCPFCHSQSETASHLFFTCGKIMPLWWEFLSWVKEDKVFHCRPMDNFLQ 430
Query: 62 MVREGMPEVLAAVQTMLY-----AIWESQNGLVFQRMSFDMGWVLAWAVALGSGWVR 113
+V +TM + +IW +N ++FQ + D+ + + L W+R
Sbjct: 431 HYSSAASKVSNTRRTMWWIAVTNSIWRLRNDIIFQNQTVDITRLTDSTLFLLWTWLR 601
>TC222789
Length = 954
Score = 31.6 bits (70), Expect = 0.23
Identities = 28/118 (23%), Positives = 51/118 (42%), Gaps = 10/118 (8%)
Frame = +2
Query: 5 LIQRKVEV-DPGCAICGNEVETMEHLFLEFPMFLGVWFASSLSLRVNLFATVEDFVSEMV 63
L +R+++V D C C N E HLF + +W+ SLS VN+ + +
Sbjct: 443 LHRRQIQVMDRSCPFCRNVEEDAGHLFFHCSKIIPIWW-ESLSW-VNISGALPKDPRQHF 616
Query: 64 REGMPEVLAAVQT---------MLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSGWV 112
+ + ++T + + IW+ +N ++F SFD ++ A L W+
Sbjct: 617 LQHDLIMAGGIRTTRWKCWWLAVTWTIWQQRNKIIFFNDSFDANKLIDEAAFLLWTWL 790
>TC233199
Length = 1105
Score = 31.2 bits (69), Expect = 0.30
Identities = 22/108 (20%), Positives = 47/108 (43%), Gaps = 9/108 (8%)
Frame = +1
Query: 15 GCAICGNEVETMEHLFLEFPMFLGVWFASSLSLRV-NLFATVEDFVSEMVREGMPEVLAA 73
G CG E HLF +W+ + + + ++F T + + ++ +V
Sbjct: 568 G*GFCGCSEEEASHLFFHCLKIQPIWWETMAWVNIKSVFPT--NLIHHFLQHSYVQVDGI 741
Query: 74 V--------QTMLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSGWVR 113
++++IW+ +N ++F SF++ +L A+ L W+R
Sbjct: 742 RIKRWRSW*MAVVWSIWQMRNSIIFSNASFNVNKLLEDAMFLIWSWLR 885
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.322 0.134 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,445,659
Number of Sequences: 63676
Number of extensions: 122601
Number of successful extensions: 669
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of query: 189
length of database: 12,639,632
effective HSP length: 92
effective length of query: 97
effective length of database: 6,781,440
effective search space: 657799680
effective search space used: 657799680
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Lotus: description of TM0011b.6