BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0010.8
(430 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC229806 similar to UP|Q8VX38 (Q8VX38) Telomere repeat binding f... 35 0.065
TC218213 similar to UP|Q9LK27 (Q9LK27) Gb|AAF01563.1, partial (21%) 34 0.11
TC211934 similar to UP|Q6WS85 (Q6WS85) Single myb histone 1, par... 34 0.15
TC207061 similar to UP|Q8RXD0 (Q8RXD0) Auxilin-like protein (At4... 33 0.25
TC215679 similar to UP|Q6WLH3 (Q6WLH3) Single myb histone 5, par... 33 0.32
TC215677 similar to GB|AAS10009.1|41619040|AY519539 MYB transcri... 33 0.32
TC233270 similar to UP|O04018 (O04018) F7G19.1 protein, partial ... 32 0.42
TC221182 weakly similar to UP|ENAH_MOUSE (Q03173) Enabled protei... 32 0.42
TC220238 UP|Q84VH5 (Q84VH5) Envelope-like protein (Fragment), co... 32 0.42
BG650128 32 0.42
CO985160 32 0.55
TC228623 similar to UP|Q9SA21 (Q9SA21) F3O9.2 protein, partial (... 32 0.72
TC224564 similar to PIR|T51159|T51159 HMG protein [imported] - A... 31 0.94
TC208524 weakly similar to UP|Q6SPE9 (Q6SPE9) Atherin, partial (7%) 31 0.94
TC211136 UP|Q84VI3 (Q84VI3) Envelope-like protein (Fragment), co... 31 1.2
TC228129 similar to UP|Q9ZPL9 (Q9ZPL9) Nodule-enhanced protein p... 31 1.2
TC231380 31 1.2
TC232703 similar to UP|Q93ZJ9 (Q93ZJ9) At1g80000/F19K16_3, parti... 30 1.6
TC218047 similar to UP|Q8GT81 (Q8GT81) Fiber protein Fb12 (Fragm... 30 1.6
TC228085 similar to UP|Q9LK27 (Q9LK27) Gb|AAF01563.1, partial (17%) 30 2.1
>TC229806 similar to UP|Q8VX38 (Q8VX38) Telomere repeat binding factor 2,
partial (54%)
Length = 1493
Score = 35.0 bits (79), Expect = 0.065
Identities = 20/46 (43%), Positives = 28/46 (60%)
Frame = +1
Query: 58 AKAAAAAVAMAEEENAAAVEREVEAERERAAAEAEEDAAEKYEQSA 103
A+ AAAA A A E A+ + A RE AAEAE +AA+ + ++A
Sbjct: 943 AQEAAAAAAKAVAEAETAIAQAEAAAREAEAAEAEAEAAQVFAKAA 1080
>TC218213 similar to UP|Q9LK27 (Q9LK27) Gb|AAF01563.1, partial (21%)
Length = 1177
Score = 34.3 bits (77), Expect = 0.11
Identities = 30/77 (38%), Positives = 36/77 (45%), Gaps = 1/77 (1%)
Frame = +1
Query: 12 LDESLKRSHEAARRREEVRQGEEAAAAYERHVAEYEQYMA-AYERYEAKAAAAAVAMAEE 70
LD LK + + E+ G+ ER E EQ A + EAKAA A AEE
Sbjct: 508 LDTILKAREKTLTQGEK---GDPEKLRQEREKLEMEQKKEKARLQAEAKAAEDARKQAEE 678
Query: 71 ENAAAVEREVEAERERA 87
E AA R+ E ERE A
Sbjct: 679 EAAAEARRKRELEREAA 729
>TC211934 similar to UP|Q6WS85 (Q6WS85) Single myb histone 1, partial (35%)
Length = 750
Score = 33.9 bits (76), Expect = 0.15
Identities = 22/44 (50%), Positives = 28/44 (63%)
Frame = +1
Query: 60 AAAAAVAMAEEENAAAVEREVEAERERAAAEAEEDAAEKYEQSA 103
AAAAA A+AE E AA+ A RE AAEAE +AA + ++A
Sbjct: 595 AAAAAKAVAEAE--AAIAEAEAAAREADAAEAEAEAARVFAKAA 720
>TC207061 similar to UP|Q8RXD0 (Q8RXD0) Auxilin-like protein (At4g12780),
partial (42%)
Length = 1760
Score = 33.1 bits (74), Expect = 0.25
Identities = 32/90 (35%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Frame = +3
Query: 14 ESLKRSHEAARRREEVRQGEEAAA-AYERHVAEYEQYM------AAYERYEAKAAAAAVA 66
E+ R++ AR R E E A A A +R +AE + + A + Y KAAA A
Sbjct: 513 EARDRTYADARERAERAAFERATAEARQRALAEARERLEKACAEARDKTYADKAAAEARL 692
Query: 67 MAEEENAAAVEREVEAERERAAAEAEEDAA 96
AE+ AVER RERA + + D A
Sbjct: 693 KAEQ---TAVERATTEARERAMDKVKVDRA 773
Score = 28.5 bits (62), Expect = 6.1
Identities = 25/82 (30%), Positives = 33/82 (39%), Gaps = 3/82 (3%)
Frame = +3
Query: 10 DRLDESLKRSHEAARRREEVRQGEEAAAAYERHVAEYEQYM---AAYERYEAKAAAAAVA 66
D LD + S R A++ ER E E A ERY A AA A
Sbjct: 867 DMLDPHCQNSSSFTHSRYPYSSVYGASSFTERSEREGESAQRCRARLERYRRTAERAAKA 1046
Query: 67 MAEEENAAAVEREVEAERERAA 88
+ E+ V ++ +AER R A
Sbjct: 1047LEEKNMRDLVAQKEQAERNRLA 1112
>TC215679 similar to UP|Q6WLH3 (Q6WLH3) Single myb histone 5, partial (34%)
Length = 1171
Score = 32.7 bits (73), Expect = 0.32
Identities = 18/44 (40%), Positives = 25/44 (55%)
Frame = +3
Query: 61 AAAAVAMAEEENAAAVEREVEAERERAAAEAEEDAAEKYEQSAT 104
AAA A A E AA+ EA +E AAEA+ +AA+ + + T
Sbjct: 507 AAAFAARAVAEAEAAIAEAEEAAKEAEAAEADAEAAQAFADATT 638
Score = 30.0 bits (66), Expect = 2.1
Identities = 23/59 (38%), Positives = 29/59 (48%)
Frame = +3
Query: 45 EYEQYMAAYERYEAKAAAAAVAMAEEENAAAVEREVEAERERAAAEAEEDAAEKYEQSA 103
E E+ + + A AA AVA AE A A E EAE A AEA + A+ +SA
Sbjct: 471 ELEKIRSMTPQEAAAFAARAVAEAEAAIAEAEEAAKEAEAAEADAEAAQAFADATTKSA 647
Score = 28.1 bits (61), Expect = 8.0
Identities = 27/91 (29%), Positives = 41/91 (44%), Gaps = 2/91 (2%)
Frame = +3
Query: 9 LDRLDESLKRSHEAARRREEVRQ--GEEAAAAYERHVAEYEQYMAAYERYEAKAAAAAVA 66
+DR + ++ + E++R +EAAA R VAE A AA+A
Sbjct: 423 IDRDETNILTRSQIDLELEKIRSMTPQEAAAFAARAVAE---------------AEAAIA 557
Query: 67 MAEEENAAAVEREVEAERERAAAEAEEDAAE 97
AEE A E +AE +A A+A +A+
Sbjct: 558 EAEEAAKEAEAAEADAEAAQAFADATTKSAK 650
>TC215677 similar to GB|AAS10009.1|41619040|AY519539 MYB transcription factor
{Arabidopsis thaliana;} , partial (61%)
Length = 1239
Score = 32.7 bits (73), Expect = 0.32
Identities = 18/44 (40%), Positives = 25/44 (55%)
Frame = +3
Query: 61 AAAAVAMAEEENAAAVEREVEAERERAAAEAEEDAAEKYEQSAT 104
AAA A A E AA+ EA +E AAEA+ +AA+ + + T
Sbjct: 780 AAAFAARAVAEAEAAIAEAEEAAKEAEAAEADAEAAQAFADATT 911
Score = 30.0 bits (66), Expect = 2.1
Identities = 23/59 (38%), Positives = 29/59 (48%)
Frame = +3
Query: 45 EYEQYMAAYERYEAKAAAAAVAMAEEENAAAVEREVEAERERAAAEAEEDAAEKYEQSA 103
E E+ + + A AA AVA AE A A E EAE A AEA + A+ +SA
Sbjct: 744 ELEKIRSMTPQEAAAFAARAVAEAEAAIAEAEEAAKEAEAAEADAEAAQAFADATTKSA 920
Score = 28.1 bits (61), Expect = 8.0
Identities = 27/91 (29%), Positives = 41/91 (44%), Gaps = 2/91 (2%)
Frame = +3
Query: 9 LDRLDESLKRSHEAARRREEVRQ--GEEAAAAYERHVAEYEQYMAAYERYEAKAAAAAVA 66
+DR + ++ + E++R +EAAA R VAE A AA+A
Sbjct: 696 IDRDETNILTRSQIDLELEKIRSMTPQEAAAFAARAVAE---------------AEAAIA 830
Query: 67 MAEEENAAAVEREVEAERERAAAEAEEDAAE 97
AEE A E +AE +A A+A +A+
Sbjct: 831 EAEEAAKEAEAAEADAEAAQAFADATTKSAK 923
>TC233270 similar to UP|O04018 (O04018) F7G19.1 protein, partial (50%)
Length = 601
Score = 32.3 bits (72), Expect = 0.42
Identities = 25/81 (30%), Positives = 33/81 (39%), Gaps = 16/81 (19%)
Frame = +1
Query: 274 IPPRQPPDFFLCGEDLCFLAADSCKPLVKDVRPPQKPPDVSICDGAPVMAT--------- 324
+PP P D FL L +AA S L+ + PP + I D +MAT
Sbjct: 115 MPPLNPKDPFL--SKLASIAASSPDTLLNTPKNSDTPPYLDIFDSPKLMATPAQVERSVS 288
Query: 325 -------RPPLKLPDMFMCGR 338
RPP LP + + GR
Sbjct: 289 YNEHRPRRPPPDLPSLLLHGR 351
>TC221182 weakly similar to UP|ENAH_MOUSE (Q03173) Enabled protein homolog
(NPC derived proline-rich protein 1) (NDPP-1), partial
(5%)
Length = 446
Score = 32.3 bits (72), Expect = 0.42
Identities = 19/48 (39%), Positives = 27/48 (55%), Gaps = 7/48 (14%)
Frame = -3
Query: 60 AAAAAVAMAEEENAAA-------VEREVEAERERAAAEAEEDAAEKYE 100
A A+ +AEEE+AAA E E E + E AAE EE+ E+++
Sbjct: 210 APLLALPLAEEESAAASLALEEEAEEEAEDDEEEEAAEEEEEEPEEWD 67
>TC220238 UP|Q84VH5 (Q84VH5) Envelope-like protein (Fragment), complete
Length = 2128
Score = 32.3 bits (72), Expect = 0.42
Identities = 17/31 (54%), Positives = 19/31 (60%)
Frame = +1
Query: 70 EENAAAVEREVEAERERAAAEAEEDAAEKYE 100
++ AA E E AE E AAE EEDAAE E
Sbjct: 1933 DDGEAAEEEEEAAEEEEEAAEEEEDAAEDTE 2025
>BG650128
Length = 349
Score = 32.3 bits (72), Expect = 0.42
Identities = 22/65 (33%), Positives = 28/65 (42%)
Frame = +3
Query: 69 EEENAAAVEREVEAERERAAAEAEEDAAEKYEQSATVTVFFGSSKAFSFGFLNKSCVLPK 128
E E ERE E ERER E E+ E+ + FF F LNK+C P+
Sbjct: 54 EREREREREREREREREREREREREREREERERELVSSFFF-------FFLLNKACSNPR 212
Query: 129 INVVL 133
+ L
Sbjct: 213 YIIFL 227
>CO985160
Length = 777
Score = 32.0 bits (71), Expect = 0.55
Identities = 38/103 (36%), Positives = 41/103 (38%)
Frame = +2
Query: 11 RLDESLKRSHEAARRREEVRQGEEAAAAYERHVAEYEQYMAAYERYEAKAAAAAVAMAEE 70
RLD L + AA V E AA A V E E A EA A AAA A A
Sbjct: 296 RLDPFLTQPSVAAAAAVAVT-AEAAAVAVVVGVVEVEVAAAVAGFAEAAAVAAAQAAAAG 472
Query: 71 ENAAAVEREVEAERERAAAEAEEDAAEKYEQSATVTVFFGSSK 113
AAAV E E AAA AEE A V G+ +
Sbjct: 473 PVAAAVAAE---EVVAAAAAAEEVVAAAAAAEEVVAAVVGAEE 592
Score = 31.2 bits (69), Expect = 0.94
Identities = 33/95 (34%), Positives = 39/95 (40%), Gaps = 4/95 (4%)
Frame = +2
Query: 22 AARRREEVRQGEEAAAAYERHVAEYEQYMAAYERYEAKAAAAAVAMAEEENAAAVERE-- 79
AA EEV AA A E+ +AA E AAAAA AEE AA V E
Sbjct: 482 AAVAAEEVVAAAAAAEEVVAAAAAAEEVVAAVVGAEEVAAAAAA--AEEVVAAVVGAEEV 655
Query: 80 --VEAERERAAAEAEEDAAEKYEQSATVTVFFGSS 112
V E A EDAA + + V F ++
Sbjct: 656 AVVACEVAAAVVATAEDAAVGFASADVVAAFVAAA 760
>TC228623 similar to UP|Q9SA21 (Q9SA21) F3O9.2 protein, partial (85%)
Length = 1082
Score = 31.6 bits (70), Expect = 0.72
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 15/92 (16%)
Frame = +3
Query: 18 RSHEAARRREEVRQGEEAAA--AYERHVAEYEQ--YMAAYERYEAKAAAAAVAMA----- 68
+S A ++ EE + EAAA A R +AE E+ + ++ + KA ++ +
Sbjct: 243 KSRAAKKKEEEAEKRAEAAARKAEARRLAEQEEKELEKSMKKVDKKATRVSIPVPKVTEV 422
Query: 69 ------EEENAAAVEREVEAERERAAAEAEED 94
EEE A A + EA+++++ AEE+
Sbjct: 423 ELRRRREEEQAEAERKAEEAKKQQSRTAAEEE 518
>TC224564 similar to PIR|T51159|T51159 HMG protein [imported] - Arabidopsis
thaliana {Arabidopsis thaliana;} , partial (82%)
Length = 833
Score = 31.2 bits (69), Expect = 0.94
Identities = 21/65 (32%), Positives = 35/65 (53%)
Frame = +1
Query: 34 EAAAAYERHVAEYEQYMAAYERYEAKAAAAAVAMAEEENAAAVEREVEAERERAAAEAEE 93
EA AA + AEYE+ + AY++ +A +A ++E + + EV E + + E EE
Sbjct: 394 EAKAAKRK--AEYEKLIKAYDKKQASSA-------DDEESDKSKSEVNDEDDASGEEEEE 546
Query: 94 DAAEK 98
D E+
Sbjct: 547 DDEEE 561
>TC208524 weakly similar to UP|Q6SPE9 (Q6SPE9) Atherin, partial (7%)
Length = 544
Score = 31.2 bits (69), Expect = 0.94
Identities = 18/34 (52%), Positives = 19/34 (54%)
Frame = -3
Query: 60 AAAAAVAMAEEENAAAVEREVEAERERAAAEAEE 93
AAA AV +AE E E EVE E E A EA E
Sbjct: 476 AAAVAVVLAEAEAEVEAEVEVEVEVEPEAVEARE 375
Score = 30.4 bits (67), Expect = 1.6
Identities = 21/46 (45%), Positives = 24/46 (51%)
Frame = -3
Query: 57 EAKAAAAAVAMAEEENAAAVEREVEAERERAAAEAEEDAAEKYEQS 102
E AAAAVA+ E A VE EVE E E E +A E E+S
Sbjct: 491 EPSLAAAAVAVVLAEAEAEVEAEVEVE-----VEVEPEAVEAREKS 369
>TC211136 UP|Q84VI3 (Q84VI3) Envelope-like protein (Fragment), complete
Length = 2043
Score = 30.8 bits (68), Expect = 1.2
Identities = 18/32 (56%), Positives = 21/32 (65%)
Frame = +1
Query: 69 EEENAAAVEREVEAERERAAAEAEEDAAEKYE 100
++E AA E E AE E AAE EEDAAE+ E
Sbjct: 1921 DDEEAAEEEGEA-AEEEEEAAEEEEDAAEETE 2013
Score = 30.0 bits (66), Expect = 2.1
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +1
Query: 74 AAVEREVEAERERAAAEAEEDAAEKYEQSATVTVFFGSSKA 114
+ ++ E AE E AAE EE+AAE+ E +A T S+A
Sbjct: 1912 SGIDDEEAAEEEGEAAEEEEEAAEEEEDAAEETESDDDSEA 2034
>TC228129 similar to UP|Q9ZPL9 (Q9ZPL9) Nodule-enhanced protein phosphatase
type 2C, partial (77%)
Length = 1019
Score = 30.8 bits (68), Expect = 1.2
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -1
Query: 353 ANRPPAKPPDSTKDGRGRKRDEGVKGSILAVTVKGKRPPKSGCLLNPSPS 402
A P PP + RGR+ + + S+ ++ RPP C L+P+P+
Sbjct: 254 AASPCTPPPPELR--RGRRTPQRSRTSLQTLSPSSPRPPSPSCSLSPTPN 111
>TC231380
Length = 1013
Score = 30.8 bits (68), Expect = 1.2
Identities = 23/85 (27%), Positives = 35/85 (41%)
Frame = +1
Query: 11 RLDESLKRSHEAARRREEVRQGEEAAAAYERHVAEYEQYMAAYERYEAKAAAAAVAMAEE 70
+L+E+ KR E R +E+ + Y + + E + A Y + +
Sbjct: 415 KLEEAQKRQIEVYRFEKELYMMQSLVDGYRKALKETRKAFAEYRAQCPQGDNEPLYKDLP 594
Query: 71 ENAAAVEREVEAERERAAAEAEEDA 95
+ V VE ERER EAEE A
Sbjct: 595 GSGGLVLTAVEVERERLKKEAEERA 669
>TC232703 similar to UP|Q93ZJ9 (Q93ZJ9) At1g80000/F19K16_3, partial (10%)
Length = 527
Score = 30.4 bits (67), Expect = 1.6
Identities = 21/54 (38%), Positives = 24/54 (43%)
Frame = +1
Query: 70 EENAAAVEREVEAERERAAAEAEEDAAEKYEQSATVTVFFGSSKAFSFGFLNKS 123
EE AVE E E E E E EE + +YE A TV S A L +S
Sbjct: 28 EEEEEAVEEEEEEEVEEEDLEEEERSEHEYEGGANGTVVKDSDDADVKALLEES 189
>TC218047 similar to UP|Q8GT81 (Q8GT81) Fiber protein Fb12 (Fragment),
partial (91%)
Length = 833
Score = 30.4 bits (67), Expect = 1.6
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 215 PVLCVLIDLFQIDDLGVTEWFQLSNSRLLG 244
P C+LI+ + + DLGV W ++S L+G
Sbjct: 361 PAACILINTYLLIDLGVATWLRVSVWMLIG 450
>TC228085 similar to UP|Q9LK27 (Q9LK27) Gb|AAF01563.1, partial (17%)
Length = 947
Score = 30.0 bits (66), Expect = 2.1
Identities = 20/49 (40%), Positives = 26/49 (52%)
Frame = +1
Query: 57 EAKAAAAAVAMAEEENAAAVEREVEAERERAAAEAEEDAAEKYEQSATV 105
EAKAA A AE E AA +R+ E ER EA A +K E++ +
Sbjct: 97 EAKAAEEAQRKAEAEAAAEAKRKRELER-----EAARQALQKMEKTVDI 228
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.318 0.137 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,330,706
Number of Sequences: 63676
Number of extensions: 393794
Number of successful extensions: 5065
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 2647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3903
length of query: 430
length of database: 12,639,632
effective HSP length: 100
effective length of query: 330
effective length of database: 6,272,032
effective search space: 2069770560
effective search space used: 2069770560
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0010.8