BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0010.5
(224 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC211008 108 1e-24
TC203464 similar to GB|AAF35920.1|7025820|AC005892 L505.8 {Leish... 86 1e-17
TC206238 weakly similar to UP|Q7PX96 (Q7PX96) AgCP12237 (Fragmen... 86 2e-17
TC208902 82 3e-16
BG725403 67 6e-12
TC220201 similar to UP|Q9ERI5 (Q9ERI5) Apoptotic cell clearance ... 67 6e-12
AW832520 60 5e-11
TC213599 homologue to UP|EXBB_PASHA (P72202) Biopolymer transpor... 50 1e-09
BU547962 59 2e-09
AW277722 similar to SP|O65719|HS73_ Heat shock cognate 70 kDa pr... 57 7e-09
CA851573 55 3e-08
CO981617 51 5e-07
BI967772 50 8e-07
TC216761 similar to UP|Q9FQE4 (Q9FQE4) Glutathione S-transferase... 50 8e-07
CO980802 49 1e-06
CO983483 44 8e-05
TC234500 43 1e-04
BU579105 similar to GP|12328468|dbj P0416D03.16 {Oryza sativa (j... 40 8e-04
CD416211 40 0.001
TC222348 38 0.004
>TC211008
Length = 516
Score = 108 bits (271), Expect = 1e-24
Identities = 60/137 (43%), Positives = 78/137 (56%), Gaps = 4/137 (2%)
Frame = +1
Query: 56 WVPPNDDWIKINTDGS----YSPVSNLAACGGVLRDHNGNYLVGFSALLGRCSINFAELW 111
W P + W+ +NTDGS + + +ACGG++RD +G YL GF+ LG S+ AELW
Sbjct: 64 WRCPXNGWVCLNTDGSVFENHRNGCSGSACGGLVRDSSGCYLGGFTVNLGNTSVTLAELW 243
Query: 112 GIYHGAKLALDRGFKKVMIESDSAFAVNLVNKGCLPSKPAAALVKNIKRTLSNFDQVHLK 171
G+ HG KLA D G KKV ++ DS A+ LV G + + PA ALV I + V
Sbjct: 244 GVVHGLKLAWDLGCKKVKVDIDSGNALGLVRHGPVANDPAFALVSEINELVRKEWLVEFS 423
Query: 172 HVFREINSVADAFAKNG 188
HVFRE N AD A G
Sbjct: 424 HVFRESNRAADKLAHLG 474
>TC203464 similar to GB|AAF35920.1|7025820|AC005892 L505.8 {Leishmania
major;} , partial (8%)
Length = 1386
Score = 85.9 bits (211), Expect = 1e-17
Identities = 53/143 (37%), Positives = 76/143 (53%), Gaps = 3/143 (2%)
Frame = +2
Query: 55 RWVPPNDDWIKINTDGSYSPV-SNLAACGGVLRDHNGNYLVGFSALLG-RCSINFAELWG 112
RW P W+K+N DGS P S+ A CGGVLRD + +L GF+ L +++ EL
Sbjct: 485 RWKKPEIGWVKLNVDGSRDPYKSSSAGCGGVLRDASAKWLRGFAKKLNPTYAVHQTELEA 664
Query: 113 IYHGAKLALDRGFKKVMIESDSAFAVNLVNKGCLPSKPAAALVKNIKRTLSNFD-QVHLK 171
I G K+A + KK+++ESDS V++V G P+ P +V+ I+ FD +V
Sbjct: 665 ILTGLKVASEMNVKKLIVESDSDSVVSMVENGVKPNHPDYGVVELIRTKRRRFDWEVRFV 844
Query: 172 HVFREINSVADAFAKNGLGLLMD 194
V + N VAD A + L D
Sbjct: 845 SVSNKANRVADRLANDARKLACD 913
>TC206238 weakly similar to UP|Q7PX96 (Q7PX96) AgCP12237 (Fragment), partial
(9%)
Length = 1259
Score = 85.5 bits (210), Expect = 2e-17
Identities = 74/250 (29%), Positives = 111/250 (43%), Gaps = 46/250 (18%)
Frame = +3
Query: 1 MIWTARNELVFEKLGHTPAVVCSKIKKLSQDFLYTLTDATDDAL-----IQRAHGT---- 51
++W +RN+LVF K G + D+L L+D TD RAH +
Sbjct: 429 LLWESRNDLVFYKDG-------------TWDYL-DLSDITDIVFNRYKDCMRAHASHILM 566
Query: 52 --GDLRWVPP----NDDWI-KINTDGSYSPVSNLAACGGVLRDHNGNYLVGFSALLGRC- 103
L+W P + W+ ++N G+Y S+ AACGG+ RD+N +++GFS LG C
Sbjct: 567 PRNLLKWRRPLPLSHGHWLLRLNVSGAYDRSSDTAACGGIFRDNNDRFVLGFSVKLGECL 746
Query: 104 SINFAELWGIYHG-------------------------AKLALDRGFKKVMIESDSAFAV 138
S + E+WGIYHG AK+A F K+++ES S A+
Sbjct: 747 SNDEGEIWGIYHGMKIARRYDIWGLYRDILRQHSIPISAKIARQHDFGKIIVESGSEKAI 926
Query: 139 NLVNKGCLPS---KPAAALVKNIKRTLSNFDQVHLKHVFREINSVADAFAKNGLGL-LMD 194
V GC S + L +K S H++ + + AD+FAK GL +
Sbjct: 927 GFVLDGCPTSTSLEHCFPLCDELKALTS-----ATNHLYFDNDYAADSFAKFGLSMKRQP 1091
Query: 195 FRIYDAIPSF 204
+I+ P F
Sbjct: 1092VKIFRVCPPF 1121
>TC208902
Length = 838
Score = 81.6 bits (200), Expect = 3e-16
Identities = 49/127 (38%), Positives = 73/127 (56%)
Frame = +1
Query: 63 WIKINTDGSYSPVSNLAACGGVLRDHNGNYLVGFSALLGRCSINFAELWGIYHGAKLALD 122
W +IN++ + +AACG VLR+ G +V F+ LG CSI+ AE+W I G KLA D
Sbjct: 223 WGRINSNCDGAVSGGVAACGRVLRNQAGAVVV-FAHNLGMCSISQAEIWAITMGVKLAWD 399
Query: 123 RGFKKVMIESDSAFAVNLVNKGCLPSKPAAALVKNIKRTLSNFDQVHLKHVFREINSVAD 182
+GF + +ESD +A+ +++ C S LVK+ K ++ + H+ RE N AD
Sbjct: 400 KGFTNLYVESDFKYAIEMMDGVCEFSNNCFQLVKSAKDSV*G-ETYSWCHILREANKTAD 576
Query: 183 AFAKNGL 189
A AK G+
Sbjct: 577 ALAKFGV 597
>BG725403
Length = 404
Score = 67.0 bits (162), Expect = 6e-12
Identities = 38/111 (34%), Positives = 53/111 (47%), Gaps = 27/111 (24%)
Frame = +3
Query: 62 DWI-KINTDGSYSPVSNLAACGGVLRDHNGNYLVGFSALLGRC-SINFAELWGIYHGAK- 118
DW+ ++N G+Y P S A CGG+ D + +++GF LG C SI+ AE+WGIYHG K
Sbjct: 3 DWLLRLNVSGAYDPSSGTATCGGIFSDKHRRFVLGFWVELGECWSIDEAEIWGIYHGMKI 182
Query: 119 ------------------------LALDRGFKKVMIESDSAFAVNLVNKGC 145
+A F K+ +ES S A+ V GC
Sbjct: 183 ARKYDIWGLYRHILRQHSIRISLGIARQHDFGKIRVESGSEKAIEFVLDGC 335
>TC220201 similar to UP|Q9ERI5 (Q9ERI5) Apoptotic cell clearance receptor
PtdSerR (Phosphatidylserine receptor), partial (5%)
Length = 1185
Score = 67.0 bits (162), Expect = 6e-12
Identities = 52/143 (36%), Positives = 75/143 (52%), Gaps = 11/143 (7%)
Frame = +1
Query: 55 RWVPPNDDWIKINTDGSY---SPVSNLAACGGVLRDHNGNYLVGFSALL--GRC-SINFA 108
+W P W+K+N DGS P S A CGGV+RD G + VGF L C ++
Sbjct: 334 KWKKPESGWVKLNVDGSRIHEEPAS--AGCGGVIRDEWGTWCVGFDQKLDPNICRQAHYT 507
Query: 109 ELWGIYHGAKLALDR--GFKKVMIESDSAFAVNLVNK--GCLPSKPAAALVKNIKRTLSN 164
EL I G K+A + +K+++ESDS AVN+V G +P +V++I R L +
Sbjct: 508 ELQAILTGLKVAREDMINVEKLVVESDSEPAVNMVKSRLGYKYHRPEYKVVQDINRLLKD 687
Query: 165 FDQV-HLKHVFREINSVADAFAK 186
+ L +V R+ N VA+ AK
Sbjct: 688 PKWLARLDYVPRKANRVANYLAK 756
>AW832520
Length = 423
Score = 59.7 bits (143), Expect(2) = 5e-11
Identities = 25/58 (43%), Positives = 38/58 (65%)
Frame = -3
Query: 54 LRWVPPNDDWIKINTDGSYSPVSNLAACGGVLRDHNGNYLVGFSALLGRCSINFAELW 111
+RW PP + K+N DG+ + S + GGV+RD +GN+++GF+ C+IN AELW
Sbjct: 256 IRWSPPPEGLFKLNYDGAVNCNSLKVSAGGVVRDSHGNFVIGFTTTPDSCTINIAELW 83
Score = 24.3 bits (51), Expect(2) = 5e-11
Identities = 10/24 (41%), Positives = 15/24 (61%)
Frame = -2
Query: 115 HGAKLALDRGFKKVMIESDSAFAV 138
H ++A GF+ + +ESDS AV
Sbjct: 77 HRLRVAHQHGFRSIEVESDSNVAV 6
>TC213599 homologue to UP|EXBB_PASHA (P72202) Biopolymer transport exbB
protein, partial (8%)
Length = 825
Score = 49.7 bits (117), Expect(2) = 1e-09
Identities = 27/63 (42%), Positives = 36/63 (56%)
Frame = +3
Query: 76 SNLAACGGVLRDHNGNYLVGFSALLGRCSINFAELWGIYHGAKLALDRGFKKVMIESDSA 135
+++AACGG+LRD +G + F LG S AEL G Y G LA D+G K + + DS
Sbjct: 342 NDMAACGGLLRDCHGRWAASFV*KLGNTSAFVAEL*GAYLGLSLAWDKGDKNLEVNIDSL 521
Query: 136 FAV 138
V
Sbjct: 522 VVV 530
Score = 29.3 bits (64), Expect(2) = 1e-09
Identities = 14/46 (30%), Positives = 25/46 (53%)
Frame = +2
Query: 167 QVHLKHVFREINSVADAFAKNGLGLLMDFRIYDAIPSFISVALMHD 212
+ +L H++RE N ADA A + ++ I + P+++S L D
Sbjct: 614 ECYLCHIYREANGCADALANYACAMEEEYVILEQ*PAWLSQLLDSD 751
>BU547962
Length = 591
Score = 58.9 bits (141), Expect = 2e-09
Identities = 36/132 (27%), Positives = 65/132 (48%), Gaps = 1/132 (0%)
Frame = -2
Query: 83 GVLRDHNGNYLVGFSALLGRCSINFAELWGIYHGAKLALDRGFKKVMIESDSAFAVN-LV 141
GV+R+HN +L ++ +G+ + AEL + G +L L+ G+ + +E D+ V +V
Sbjct: 590 GVVRNHNAEFLXXYAESIGQANSTIAELTALRKGLELVLENGWNDIWLEGDAKTLVEIIV 411
Query: 142 NKGCLPSKPAAALVKNIKRTLSNFDQVHLKHVFREINSVADAFAKNGLGLLMDFRIYDAI 201
+ + + +I L F+ + H++RE N AD FA+ G L RI+
Sbjct: 410 KRRKVRCTEVQRHINHINTILPEFNNFFVSHIYREGNRAADKFAQMGHHLDQP-RIWRHP 234
Query: 202 PSFISVALMHDS 213
P + L+ D+
Sbjct: 233 PDELLAQLLEDA 198
>AW277722 similar to SP|O65719|HS73_ Heat shock cognate 70 kDa protein 3
(Hsc70.3). [Mouse-ear cress] {Arabidopsis thaliana},
partial (8%)
Length = 432
Score = 57.0 bits (136), Expect = 7e-09
Identities = 27/62 (43%), Positives = 39/62 (62%), Gaps = 4/62 (6%)
Frame = +1
Query: 56 WVPPNDDWIKINTDGS----YSPVSNLAACGGVLRDHNGNYLVGFSALLGRCSINFAELW 111
W P + W+ +NTDGS + + +ACGG++RD +G YL GF+ LG S+ AELW
Sbjct: 247 WRCPPNGWVCLNTDGSVFENHRNGCSGSACGGLVRDSSGCYLGGFTVNLGNTSVTLAELW 426
Query: 112 GI 113
G+
Sbjct: 427 GV 432
>CA851573
Length = 614
Score = 55.1 bits (131), Expect = 3e-08
Identities = 39/120 (32%), Positives = 64/120 (52%), Gaps = 3/120 (2%)
Frame = +1
Query: 96 FSALLGRCSINFAELWGIYHGAKLALDRGFKKVMIESDSAFAVNLVNKGCLPSKPAA--A 153
FS LG C++ AELW + +G KLA+D + + E D+ AV++++ + S P++
Sbjct: 64 FSKRLGYCNVILAELWSLKYGIKLAIDLNTQFSLFEMDAREAVHMIDX--IKSVPSSLRP 237
Query: 154 LVKNIKRTL-SNFDQVHLKHVFREINSVADAFAKNGLGLLMDFRIYDAIPSFISVALMHD 212
L +I+R L +N Q + H+ RE NS A+ AK G + D IP + + +D
Sbjct: 238 LAADIRRVLWANGWQSSIVHINREANSAANWAAKFGHQRNWSSFLVDEIPFVLKALVAND 417
>CO981617
Length = 837
Score = 50.8 bits (120), Expect = 5e-07
Identities = 34/105 (32%), Positives = 50/105 (47%)
Frame = -1
Query: 56 WVPPNDDWIKINTDGSYSPVSNLAACGGVLRDHNGNYLVGFSALLGRCSINFAELWGIYH 115
W PP K+N C GV+ H + + CSI A+LW I++
Sbjct: 351 WSPPCPGVSKVN-------------CDGVVFIHEA-----IATWMASCSILEAKLWSIFY 226
Query: 116 GAKLALDRGFKKVMIESDSAFAVNLVNKGCLPSKPAAALVKNIKR 160
G +LA D G + +++ESDS AVN + + + P LV+ IKR
Sbjct: 225 GMRLAEDCGVQHIIMESDSVEAVNHLMEHSYDNHPLFHLVQEIKR 91
>BI967772
Length = 719
Score = 50.1 bits (118), Expect = 8e-07
Identities = 24/52 (46%), Positives = 34/52 (65%)
Frame = +3
Query: 83 GVLRDHNGNYLVGFSALLGRCSINFAELWGIYHGAKLALDRGFKKVMIESDS 134
G+ RDH+G+ L F+A + C + AE W IY G +A + GFK ++IESDS
Sbjct: 435 GLQRDHSGDVLFCFAAKVDYCFVLHAESWTIYIGLIIAWEEGFKNLIIESDS 590
>TC216761 similar to UP|Q9FQE4 (Q9FQE4) Glutathione S-transferase GST 14
(Fragment) , complete
Length = 1353
Score = 50.1 bits (118), Expect = 8e-07
Identities = 27/77 (35%), Positives = 42/77 (54%)
Frame = +1
Query: 119 LALDRGFKKVMIESDSAFAVNLVNKGCLPSKPAAALVKNIKRTLSNFDQVHLKHVFREIN 178
+A RG + ++ ESDS+ A+ L++ G + P AALV I+ + + +H RE N
Sbjct: 1018 IAWTRGIRNLICESDSSMALQLISTGVYITHPRAALVTTIRSFMDKDWCLSFQHTLREGN 1197
Query: 179 SVADAFAKNGLGLLMDF 195
VAD AK G+ + F
Sbjct: 1198 FVADGLAKKGVHVTASF 1248
>CO980802
Length = 803
Score = 49.3 bits (116), Expect = 1e-06
Identities = 23/58 (39%), Positives = 34/58 (57%)
Frame = -3
Query: 63 WIKINTDGSYSPVSNLAACGGVLRDHNGNYLVGFSALLGRCSINFAELWGIYHGAKLA 120
+ K+N DGSY + AC G++ D G L F + +G C+ +A+LWG+ HG K A
Sbjct: 405 FFKVNVDGSYKASTAKMACRGIILDSFGRVLSCFHSNIGVCNSIWAKLWGLKHGIKPA 232
>CO983483
Length = 829
Score = 43.5 bits (101), Expect = 8e-05
Identities = 23/66 (34%), Positives = 36/66 (53%)
Frame = +2
Query: 94 VGFSALLGRCSINFAELWGIYHGAKLALDRGFKKVMIESDSAFAVNLVNKGCLPSKPAAA 153
+G LL I AE + +YHG K+A D+G + ++ ESDS A+ L+ P A
Sbjct: 536 LGHLGLL*TKFIQIAEQFALYHGLKVAEDKGIRSLICESDSKMALQLIQHNDNAFHPHAL 715
Query: 154 LVKNIK 159
L++ I+
Sbjct: 716 LIRKIQ 733
>TC234500
Length = 866
Score = 42.7 bits (99), Expect = 1e-04
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = +1
Query: 59 PNDDWIKINTDGSYSPVSNLAACGGVLRDHNGNYLVGFSALLGRCS 104
P WIK N DGSY + +L + V RD G++ GF+ LG S
Sbjct: 127 PEVGWIKANVDGSYKALQHLTSSSAVFRDSTGSWCFGFALNLGNLS 264
Score = 36.2 bits (82), Expect = 0.012
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +3
Query: 110 LWGIYHGAKLALDRGFKKVMIESDSAFAVN-LVNKGCLPSKPAAALVKNIKRTLSNFD 166
LW + KLA ++G ++ IE+D ++ ++NK P A LV++I ++NFD
Sbjct: 453 LWSVITALKLAKEKGVSQLWIETDCTPVMDCILNKRVQKGVPFAPLVESILELMTNFD 626
>BU579105 similar to GP|12328468|dbj P0416D03.16 {Oryza sativa (japonica
cultivar-group)}, partial (4%)
Length = 425
Score = 40.0 bits (92), Expect = 8e-04
Identities = 18/33 (54%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +3
Query: 55 RWVPPNDDWIKINTDGSYSPV-SNLAACGGVLR 86
RW P W+K+N DGS P S+ A CGGVLR
Sbjct: 327 RWKKPEIGWVKLNVDGSRDPYKSSSAGCGGVLR 425
>CD416211
Length = 551
Score = 39.7 bits (91), Expect = 0.001
Identities = 28/84 (33%), Positives = 45/84 (53%)
Frame = -3
Query: 58 PPNDDWIKINTDGSYSPVSNLAACGGVLRDHNGNYLVGFSALLGRCSINFAELWGIYHGA 117
PP+ + IKINTDGS ++ GGV R+ +G+ F LG+ + G+ +
Sbjct: 474 PPDPNTIKINTDGSSFGNPGISGYGGVFRNEHGHVASWF---LGQQWVYD*HKCGVVSNS 304
Query: 118 KLALDRGFKKVMIESDSAFAVNLV 141
K +G + V+ ESDSA ++ +V
Sbjct: 303 K---QKG*QSVICESDSALSLLMV 241
>TC222348
Length = 995
Score = 37.7 bits (86), Expect = 0.004
Identities = 22/81 (27%), Positives = 40/81 (49%)
Frame = -2
Query: 59 PNDDWIKINTDGSYSPVSNLAACGGVLRDHNGNYLVGFSALLGRCSINFAELWGIYHGAK 118
P+ WIK NTD + LA CG + N +L F+ + S FAE+ +
Sbjct: 328 PDYPWIKCNTDCAARGNPGLAGCGKLFIYSNARFLGNFAYSIAINSAFFAEVMAAIIAIE 149
Query: 119 LALDRGFKKVMIESDSAFAVN 139
A++ + + +++DS+F ++
Sbjct: 148 KAVENRWNFLWLKTDSSFQLS 86
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.322 0.139 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,771,267
Number of Sequences: 63676
Number of extensions: 140360
Number of successful extensions: 585
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of query: 224
length of database: 12,639,632
effective HSP length: 94
effective length of query: 130
effective length of database: 6,654,088
effective search space: 865031440
effective search space used: 865031440
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Lotus: description of TM0010.5