BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0010.3.5
(80 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC214120 homologue to UP|RUXG_ARATH (O82221) Probable small nucl... 151 5e-38
TC214117 homologue to UP|RUXG_ARATH (O82221) Probable small nucl... 151 5e-38
TC214306 homologue to UP|RUXG_ARATH (O82221) Probable small nucl... 148 4e-37
AW733633 126 2e-30
BM177830 PIR|S22826|S228 small nuclear ribonucleoprotein E homol... 75 6e-15
AI938791 65 6e-12
BE609935 64 2e-11
TC218659 weakly similar to UP|Q9VJI7 (Q9VJI7) CG13277-PA (RH7352... 59 3e-10
TC234231 weakly similar to UP|Q9W2K2 (Q9W2K2) CG4279-PA, partial... 48 8e-07
AI966631 48 1e-06
TC208465 similar to GB|AAM16215.1|20334918|AY094059 At1g65700/F1... 44 1e-05
TC206802 similar to PIR|T47805|T47805 U6 snRNA-associated Sm-lik... 39 6e-04
TC222973 similar to UP|Q945P8 (Q945P8) At1g19120/F14D16_26, part... 37 0.002
TC215754 homologue to UP|Q9C6K5 (Q9C6K5) Sm-like protein, partia... 36 0.003
TC215751 homologue to UP|Q9C6K5 (Q9C6K5) Sm-like protein, complete 36 0.003
TC225639 homologue to UP|Q9FKB0 (Q9FKB0) Sm-like protein, partia... 36 0.004
TC225733 homologue to UP|Q8LAK5 (Q8LAK5) Small nuclear ribonucle... 35 0.005
TC225732 homologue to UP|Q8LAK5 (Q8LAK5) Small nuclear ribonucle... 35 0.005
TC225637 homologue to UP|Q9FKB0 (Q9FKB0) Sm-like protein, partia... 35 0.007
TC225734 homologue to UP|Q8LAK5 (Q8LAK5) Small nuclear ribonucle... 35 0.007
>TC214120 homologue to UP|RUXG_ARATH (O82221) Probable small nuclear
ribonucleoprotein G (snRNP-G) (Sm protein G) (Sm-G)
(SmG), partial (98%)
Length = 583
Score = 151 bits (382), Expect = 5e-38
Identities = 74/79 (93%), Positives = 77/79 (96%)
Frame = +2
Query: 1 MSRSGQPPDLKKYMDKNLQIKLNANRMIVGTLRGYDQFMNMVVDNTVEVNGNEKNDIGMV 60
MSRSGQPPDLKKYMDK LQIKLNANRM+VGTLRG+DQFMN+VVDNTVEVNGNEKNDIGMV
Sbjct: 89 MSRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMV 268
Query: 61 VIRGNSVVTVEALEPVTRT 79
VIRGNSVVTVEALEPV RT
Sbjct: 269 VIRGNSVVTVEALEPVNRT 325
>TC214117 homologue to UP|RUXG_ARATH (O82221) Probable small nuclear
ribonucleoprotein G (snRNP-G) (Sm protein G) (Sm-G)
(SmG), partial (98%)
Length = 534
Score = 151 bits (382), Expect = 5e-38
Identities = 74/79 (93%), Positives = 77/79 (96%)
Frame = +1
Query: 1 MSRSGQPPDLKKYMDKNLQIKLNANRMIVGTLRGYDQFMNMVVDNTVEVNGNEKNDIGMV 60
MSRSGQPPDLKKYMDK LQIKLNANRM+VGTLRG+DQFMN+VVDNTVEVNGNEKNDIGMV
Sbjct: 85 MSRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMV 264
Query: 61 VIRGNSVVTVEALEPVTRT 79
VIRGNSVVTVEALEPV RT
Sbjct: 265 VIRGNSVVTVEALEPVNRT 321
>TC214306 homologue to UP|RUXG_ARATH (O82221) Probable small nuclear
ribonucleoprotein G (snRNP-G) (Sm protein G) (Sm-G)
(SmG), partial (98%)
Length = 797
Score = 148 bits (374), Expect = 4e-37
Identities = 73/78 (93%), Positives = 75/78 (95%)
Frame = +3
Query: 1 MSRSGQPPDLKKYMDKNLQIKLNANRMIVGTLRGYDQFMNMVVDNTVEVNGNEKNDIGMV 60
MSRSGQPPDLKKYMDK LQIKLN NRMIVGTLRG+DQFMN+VVDNTVEVNGNEKNDIGMV
Sbjct: 279 MSRSGQPPDLKKYMDKKLQIKLNGNRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMV 458
Query: 61 VIRGNSVVTVEALEPVTR 78
VIRGNSVVTVEALEPV R
Sbjct: 459 VIRGNSVVTVEALEPVNR 512
>AW733633
Length = 289
Score = 126 bits (316), Expect = 2e-30
Identities = 60/64 (93%), Positives = 63/64 (97%)
Frame = +3
Query: 1 MSRSGQPPDLKKYMDKNLQIKLNANRMIVGTLRGYDQFMNMVVDNTVEVNGNEKNDIGMV 60
MSRSGQPPDLKKYMDK LQIKLNANRM+VGTLRG+DQFMN+VVDNTVEVNGNEKNDIGMV
Sbjct: 39 MSRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMV 218
Query: 61 VIRG 64
VIRG
Sbjct: 219 VIRG 230
>BM177830 PIR|S22826|S228 small nuclear ribonucleoprotein E homolog -
alfalfa, partial (43%)
Length = 420
Score = 75.1 bits (183), Expect = 6e-15
Identities = 37/39 (94%), Positives = 38/39 (96%)
Frame = +3
Query: 41 MVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPVTRT 79
+VVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPV RT
Sbjct: 171 VVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPVNRT 287
>AI938791
Length = 199
Score = 65.1 bits (157), Expect = 6e-12
Identities = 35/66 (53%), Positives = 43/66 (65%)
Frame = +2
Query: 2 SRSGQPPDLKKYMDKNLQIKLNANRMIVGTLRGYDQFMNMVVDNTVEVNGNEKNDIGMVV 61
SRSGQPPDLKKYM LQIKLNANRM VGTLR + N + N + N I M++
Sbjct: 2 SRSGQPPDLKKYMHTKLQIKLNANRMDVGTLRCSNHSTNSLATPL*NCNVIDNNHIHMIL 181
Query: 62 IRGNSV 67
I+ N++
Sbjct: 182IKINNI 199
>BE609935
Length = 139
Score = 63.5 bits (153), Expect = 2e-11
Identities = 31/40 (77%), Positives = 34/40 (84%)
Frame = +2
Query: 2 SRSGQPPDLKKYMDKNLQIKLNANRMIVGTLRGYDQFMNM 41
SRSG+PPDLKK MD LQI+LNANRM VGTLRG DQ MN+
Sbjct: 2 SRSGRPPDLKKCMDGKLQIRLNANRMGVGTLRGLDQVMNV 121
>TC218659 weakly similar to UP|Q9VJI7 (Q9VJI7) CG13277-PA (RH73529p), partial
(81%)
Length = 578
Score = 59.3 bits (142), Expect = 3e-10
Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 9/71 (12%)
Frame = +3
Query: 9 DLKKYMDKNLQIKLNANRMIVGTLRGYDQFMNMVVDNTVEV---------NGNEKNDIGM 59
DL K++DK +Q+KL R + GTL+GYDQ +N+V+D VE ++ ++G+
Sbjct: 141 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRNLGL 320
Query: 60 VVIRGNSVVTV 70
+V RG +V+ V
Sbjct: 321 IVCRGTAVMLV 353
>TC234231 weakly similar to UP|Q9W2K2 (Q9W2K2) CG4279-PA, partial (50%)
Length = 748
Score = 48.1 bits (113), Expect = 8e-07
Identities = 28/69 (40%), Positives = 41/69 (58%), Gaps = 4/69 (5%)
Frame = +2
Query: 10 LKKYMDKNLQIKLNANRMIVGTLRGYDQFMNMVVDNTVE--VNGNEKNDI--GMVVIRGN 65
L Y+DK L + L R ++GTLR +DQF N V++ E + G+ DI G+ VIRG
Sbjct: 197 LASYLDKKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGE 376
Query: 66 SVVTVEALE 74
+VV + L+
Sbjct: 377 NVVLIGELD 403
>AI966631
Length = 109
Score = 47.8 bits (112), Expect = 1e-06
Identities = 23/36 (63%), Positives = 28/36 (76%)
Frame = +2
Query: 6 QPPDLKKYMDKNLQIKLNANRMIVGTLRGYDQFMNM 41
Q P L KYM LQIKLNANRM+V T+RG++Q MN+
Sbjct: 2 QSPHL*KYMYTKLQIKLNANRMVVETIRGFNQQMNI 109
>TC208465 similar to GB|AAM16215.1|20334918|AY094059 At1g65700/F1E22_3
{Arabidopsis thaliana;} , complete
Length = 684
Score = 43.9 bits (102), Expect = 1e-05
Identities = 22/72 (30%), Positives = 42/72 (57%), Gaps = 5/72 (6%)
Frame = +3
Query: 8 PDLKKYMDKNLQIKLNANRMIVGTLRGYDQFMNMVVDNTVE-----VNGNEKNDIGMVVI 62
P L+ +D+ + + N R IVG L+G+DQ N+++D + E G ++ +G+ +I
Sbjct: 132 PGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYII 311
Query: 63 RGNSVVTVEALE 74
RG+++ V L+
Sbjct: 312 RGDNISVVGELD 347
>TC206802 similar to PIR|T47805|T47805 U6 snRNA-associated Sm-like protein -
Arabidopsis thaliana {Arabidopsis thaliana;} , complete
Length = 705
Score = 38.5 bits (88), Expect = 6e-04
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +3
Query: 10 LKKYMDKNLQIKLNANRMIVGTLRGYDQFMNMVVDNTVE-VNGNEKNDIGMVVIRGNSVV 68
LK + + +KLN+ G L D +MN+ ++ T E VNG KN G IRGN+V+
Sbjct: 243 LKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 422
Query: 69 TV 70
+
Sbjct: 423 YI 428
>TC222973 similar to UP|Q945P8 (Q945P8) At1g19120/F14D16_26, partial (37%)
Length = 457
Score = 36.6 bits (83), Expect = 0.002
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = +1
Query: 10 LKKYMDKNLQIKLNANRMIVGTLRGYDQFMNMV 42
L Y+DK L + L R ++GTLR +DQF N V
Sbjct: 358 LASYLDKKLLVLLRDGRKLMGTLRSFDQFANAV 456
>TC215754 homologue to UP|Q9C6K5 (Q9C6K5) Sm-like protein, partial (96%)
Length = 752
Score = 36.2 bits (82), Expect = 0.003
Identities = 25/90 (27%), Positives = 46/90 (50%), Gaps = 15/90 (16%)
Frame = +1
Query: 6 QPPDLKKY-MDKNLQIKLNANRMIVGTLRGYDQFMNMVVDN------TVEVNG------- 51
+P DL + +D+ + +KL ++R + G L YDQ +NM++ + TVE++
Sbjct: 133 EPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIV 312
Query: 52 -NEKNDIGMVVIRGNSVVTVEALEPVTRTS 80
K + + +RG+ V+ V P RT+
Sbjct: 313 RTTKRTVPFLFVRGDGVILV---SPPLRTA 393
>TC215751 homologue to UP|Q9C6K5 (Q9C6K5) Sm-like protein, complete
Length = 733
Score = 36.2 bits (82), Expect = 0.003
Identities = 25/90 (27%), Positives = 46/90 (50%), Gaps = 15/90 (16%)
Frame = +1
Query: 6 QPPDLKKY-MDKNLQIKLNANRMIVGTLRGYDQFMNMVVDN------TVEVNG------- 51
+P DL + +D+ + +KL ++R + G L YDQ +NM++ + TVE++
Sbjct: 109 EPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIITTVEIDDETYEEIV 288
Query: 52 -NEKNDIGMVVIRGNSVVTVEALEPVTRTS 80
K + + +RG+ V+ V P RT+
Sbjct: 289 RTTKRTVPFLFVRGDGVILV---SPPLRTA 369
>TC225639 homologue to UP|Q9FKB0 (Q9FKB0) Sm-like protein, partial (97%)
Length = 830
Score = 35.8 bits (81), Expect = 0.004
Identities = 14/62 (22%), Positives = 35/62 (55%), Gaps = 4/62 (6%)
Frame = +1
Query: 10 LKKYMDKNLQIKLNANRMIVGTLRGYDQFMNMVVDNTVE----VNGNEKNDIGMVVIRGN 65
+ + + + + + ++ +VGTLRG+D ++NMV+++ E G + +++ GN
Sbjct: 361 IDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 540
Query: 66 SV 67
++
Sbjct: 541 NI 546
>TC225733 homologue to UP|Q8LAK5 (Q8LAK5) Small nuclear ribonucleoprotein
homolog, complete
Length = 530
Score = 35.4 bits (80), Expect = 0.005
Identities = 14/42 (33%), Positives = 31/42 (73%), Gaps = 2/42 (4%)
Frame = +2
Query: 28 IVGTLRGYDQFMNMVVDNTVEVNGNEKN--DIGMVVIRGNSV 67
I G + G+D++MN+V+D+ EVN +K+ +G ++++G+++
Sbjct: 194 IEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNI 319
>TC225732 homologue to UP|Q8LAK5 (Q8LAK5) Small nuclear ribonucleoprotein
homolog, complete
Length = 715
Score = 35.4 bits (80), Expect = 0.005
Identities = 14/42 (33%), Positives = 31/42 (73%), Gaps = 2/42 (4%)
Frame = +1
Query: 28 IVGTLRGYDQFMNMVVDNTVEVNGNEKN--DIGMVVIRGNSV 67
I G + G+D++MN+V+D+ EVN +K+ +G ++++G+++
Sbjct: 214 IEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNI 339
>TC225637 homologue to UP|Q9FKB0 (Q9FKB0) Sm-like protein, partial (97%)
Length = 591
Score = 35.0 bits (79), Expect = 0.007
Identities = 14/62 (22%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Frame = +3
Query: 10 LKKYMDKNLQIKLNANRMIVGTLRGYDQFMNMVVDNTVE----VNGNEKNDIGMVVIRGN 65
+ + + + + + ++ +VGTLRG+D + NMV+++ E G + +++ GN
Sbjct: 180 IDRCIGSKIWVIMKGDKELVGTLRGFDVYANMVLEDVTEYEITAEGRRITKLDQILLNGN 359
Query: 66 SV 67
++
Sbjct: 360 NI 365
>TC225734 homologue to UP|Q8LAK5 (Q8LAK5) Small nuclear ribonucleoprotein
homolog, complete
Length = 837
Score = 35.0 bits (79), Expect = 0.007
Identities = 14/42 (33%), Positives = 31/42 (73%), Gaps = 2/42 (4%)
Frame = +2
Query: 28 IVGTLRGYDQFMNMVVDNTVEVNGNEKN--DIGMVVIRGNSV 67
I G + G+D++MN+V+D+ EVN +K+ +G ++++G+++
Sbjct: 221 IEGRIIGFDEYMNLVLDDAEEVNIKKKSRKTLGRILLKGDNI 346
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.314 0.133 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,113,445
Number of Sequences: 63676
Number of extensions: 14388
Number of successful extensions: 69
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of query: 80
length of database: 12,639,632
effective HSP length: 56
effective length of query: 24
effective length of database: 9,073,776
effective search space: 217770624
effective search space used: 217770624
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)
Lotus: description of TM0010.3.5