BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0010.17
(237 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC225826 homologue to UP|PDX1_PHAVU (Q9FT25) Probable pyridoxin ... 34 0.051
TC226736 similar to UP|Q9SEE9 (Q9SEE9) Arginine/serine-rich prot... 34 0.051
TC229786 UP|RT13_SOYBN (Q8LPW2) Small ribosomal subunit protein ... 34 0.067
BI785637 33 0.087
TC208396 similar to GB|AAQ62419.1|34146822|BT010418 At4g05400 {A... 33 0.087
TC217234 UP|Q43457 (Q43457) Heat shock transcription factor 34, ... 33 0.11
TC222141 homologue to UP|HMGI_HUMAN (P17096) High mobility group... 33 0.11
TC221403 similar to UP|Q84Y01 (Q84Y01) Inositol phosphate kinase... 32 0.19
TC234104 weakly similar to UP|CYSZ_CUCMA (P49299) Citrate syntha... 32 0.25
TC221164 weakly similar to UP|Q8HKW9 (Q8HKW9) NADH dehydrogenase... 32 0.25
TC227181 similar to UP|Q940N7 (Q940N7) AT4g05150/C17L7_70, parti... 32 0.25
BF424389 32 0.25
TC208277 similar to UP|Q9W4V3 (Q9W4V3) CG14419-PA (RH61722p), pa... 32 0.33
TC213266 32 0.33
TC232596 similar to GB|AAP37848.1|30725652|BT008489 At2g29650 {A... 31 0.43
TC227700 similar to UP|Q8L7Y9 (Q8L7Y9) At1g07230/F10K1_4 (Phosph... 31 0.43
BM523406 homologue to PIR|T07623|T076 extensin homolog HRGP2 - s... 31 0.43
TC213243 homologue to UP|O49504 (O49504) BZIP transcription fact... 31 0.43
TC222434 homologue to UP|Q8LP37 (Q8LP37) PlCYC3 protein (Fragmen... 31 0.56
BG509681 similar to EGAD|98465|10647 7 kDa photosystem ii core c... 31 0.56
>TC225826 homologue to UP|PDX1_PHAVU (Q9FT25) Probable pyridoxin biosynthesis
protein PDX1 (pvPDX1), partial (96%)
Length = 1482
Score = 34.3 bits (77), Expect = 0.051
Identities = 28/97 (28%), Positives = 37/97 (37%), Gaps = 5/97 (5%)
Frame = +3
Query: 112 PATQQPYNLHEHRQQQQPPPPQPTTFTLSTEPRKTDKRRRRRDPGKEIERDREPPIETSH 171
PA Q + H + P +P S +PR R RRR+ G R R+P +T
Sbjct: 354 PAAHQGHQAGRHHPRHGQGPHRP--LRRSPDPRSHRHRLRRRERGPHPRRRRQPHQQTQL 527
Query: 172 PN-----LHRDRDGGGMERRGARSRETAKRDRETMDH 203
P+ L + R G RG R R R H
Sbjct: 528 PHPLRLWLPQPRRGPPPHPRGRRHDPHQGRGRHRQHH 638
>TC226736 similar to UP|Q9SEE9 (Q9SEE9) Arginine/serine-rich protein, partial
(63%)
Length = 1243
Score = 34.3 bits (77), Expect = 0.051
Identities = 29/123 (23%), Positives = 46/123 (36%), Gaps = 16/123 (13%)
Frame = +2
Query: 111 NPATQQPYNLHEHRQQQQPPPPQPTTFTLSTEPRKTDK-----RRRRRDPGKEIERDR-- 163
+PA P + +++ PPP P + PR + RRR R P + R R
Sbjct: 569 SPARLSPRRMRGSPGRRRSPPPPPRRRSPPRRPRSPPRRSPIGRRRTRSPIRRSARSRSR 748
Query: 164 -------EPPIETSHPNLHRDRDGGGMERRGARSRETAK--RDRETMDHHHALHLPPQIP 214
PP+ + + D R ++SR + R R + + + PP P
Sbjct: 749 SFSPRRGRPPVRRGRSSSYSDSPSPRKVSRRSKSRSPRRPLRGRGSSNSSSSSSPPPPPP 928
Query: 215 EPT 217
PT
Sbjct: 929 PPT 937
>TC229786 UP|RT13_SOYBN (Q8LPW2) Small ribosomal subunit protein S13,
mitochondrial precursor, complete
Length = 567
Score = 33.9 bits (76), Expect = 0.067
Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 9/103 (8%)
Frame = +3
Query: 103 VASPIFTLNPATQQPYNLHEHR------QQQQPPPPQPTTFTLSTEPRKTDKRRRRRDPG 156
V P + Q + LH R ++ PPP +P + K +R RRDPG
Sbjct: 63 VGKPTYIARK*HLQIFQLHHVRFRTNPLRRHSPPPSKPFGSRCARAEHKHRRRCGRRDPG 242
Query: 157 KEIE--RDREPPIETSHPNLHRDRD-GGGMERRGARSRETAKR 196
++ R EPP R+R G RR AR RE ++
Sbjct: 243 QQASGVRSSEPP---------RNRPFQGATHRRRARRREQIRQ 344
>BI785637
Length = 422
Score = 33.5 bits (75), Expect = 0.087
Identities = 17/40 (42%), Positives = 22/40 (54%)
Frame = +1
Query: 125 QQQQPPPPQPTTFTLSTEPRKTDKRRRRRDPGKEIERDRE 164
Q+Q PPQ T T + +P + K RR +E ERDRE
Sbjct: 196 QEQLTKPPQFPTTTRNVQPSQNGKNGRRVKTQRETERDRE 315
>TC208396 similar to GB|AAQ62419.1|34146822|BT010418 At4g05400 {Arabidopsis
thaliana;} , partial (67%)
Length = 891
Score = 33.5 bits (75), Expect = 0.087
Identities = 22/76 (28%), Positives = 30/76 (38%)
Frame = +2
Query: 130 PPPQPTTFTLSTEPRKTDKRRRRRDPGKEIERDREPPIETSHPNLHRDRDGGGMERRGAR 189
P + TTF P T R P R PP HP L R+R R +
Sbjct: 14 PHSKTTTFPREHNPAPTHHRNHAPPPKAATFSLRAPP----HPTLRRER------HRKGQ 163
Query: 190 SRETAKRDRETMDHHH 205
S + ++ +T+ HHH
Sbjct: 164 SEDQSRPSAKTLPHHH 211
>TC217234 UP|Q43457 (Q43457) Heat shock transcription factor 34, complete
Length = 1423
Score = 33.1 bits (74), Expect = 0.11
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = -1
Query: 117 PYNLHEHRQQQQPPPPQPTTFTLSTEPRKTDKRRRRRDPGKEIERDREPPIETSHPNLHR 176
P+N + +Q PPPP PTTF ++P+ + R G I R +SH L R
Sbjct: 1036 PFNQTPNSFKQSPPPPSPTTF---SDPQLPCRMMRSI*SGPTIRRSLRKATSSSHCFLAR 866
>TC222141 homologue to UP|HMGI_HUMAN (P17096) High mobility group protein
HMG-I/HMG-Y (HMG-I(Y)) (High mobility group AT-hook 1),
partial (11%)
Length = 564
Score = 33.1 bits (74), Expect = 0.11
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Frame = +3
Query: 124 RQQQQPPPPQPTTFTLSTEPRKTDKRRRRRDPGKEIERDREPPIETSHPN-----LHRDR 178
R+++ PPPP T L T R K+RR + ++ R ++ + L R+R
Sbjct: 93 RRKRSPPPPATTPVPLLTRRRAERKQRRPKPRTQKGTRRKQQQQQQRWQRRWRCWLRRNR 272
Query: 179 DGGGMERRGARSRETAKRDRETMDHHHA 206
+ R+ R +E A +T HHHA
Sbjct: 273 NFKKTSRKTRRIQEQA----QTPHHHHA 344
>TC221403 similar to UP|Q84Y01 (Q84Y01) Inositol phosphate kinase, partial
(43%)
Length = 700
Score = 32.3 bits (72), Expect = 0.19
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Frame = +1
Query: 119 NLHEHRQQQQPPPPQPTTFTLSTEPRKTDKRRRRRDPGKEIERDR----EPPIETSHPNL 174
N+H HR Q Q P P P + + D R + G+EI RDR E HP L
Sbjct: 19 NIHHHRAQHQTPSPLP---QIRVSLWECDSARGSINGGEEIRRDRVRSGAEEAEQLHPRL 189
>TC234104 weakly similar to UP|CYSZ_CUCMA (P49299) Citrate synthase,
glyoxysomal precursor (GCS) , partial (10%)
Length = 447
Score = 32.0 bits (71), Expect = 0.25
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Frame = +2
Query: 119 NLHEHRQQQQPPPP---QPTTFTLSTEPRKTDKRRRRRDPGKEIERDREPPIETSHPNLH 175
+L H +++ PPPP +P + EP RRRR DR+ + SHP H
Sbjct: 239 SLRRHLRRRDPPPPPALRPHRRLAAGEPEGHPYRRRR--------EDRQEVPDRSHPRWH 394
Query: 176 R 176
R
Sbjct: 395 R 397
Score = 28.1 bits (61), Expect = 3.7
Identities = 21/64 (32%), Positives = 27/64 (41%), Gaps = 7/64 (10%)
Frame = +1
Query: 129 PPPPQPTTFTLSTEPRKTDKRRRRRDP-------GKEIERDREPPIETSHPNLHRDRDGG 181
PPPP+ +T T S P +T +RR R P R + P + S P R G
Sbjct: 253 PPPPRSSTPTGSPPPPETCRRRT*RAPLPSSTRGPARSTRSKSPQMAPSEPLTSRRYHLG 432
Query: 182 GMER 185
M R
Sbjct: 433 KMTR 444
>TC221164 weakly similar to UP|Q8HKW9 (Q8HKW9) NADH dehydrogenase subunit 3,
partial (25%)
Length = 920
Score = 32.0 bits (71), Expect = 0.25
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Frame = +2
Query: 110 LNPATQQPYNLHEHRQQQQPPPPQPTTFT---LSTEPRKTDKRRRRRDP 155
L+P + LH Q + PPPP P T T T KT R RR P
Sbjct: 53 LHPKNKSWPLLHLSEQNRTPPPPPPMTLTCCRCRTPSPKTYSTRHRRSP 199
>TC227181 similar to UP|Q940N7 (Q940N7) AT4g05150/C17L7_70, partial (38%)
Length = 1611
Score = 32.0 bits (71), Expect = 0.25
Identities = 31/117 (26%), Positives = 40/117 (33%), Gaps = 12/117 (10%)
Frame = +2
Query: 112 PATQQPYNLHEHRQQQQPPPP--QPTTFTLSTEPRKTDKRRRRRDPGKEIERDREPPIET 169
P P+ LH ++Q PPPP QP P RRR P R ++T
Sbjct: 143 PRRAAPHPLHVQLRRQDPPPPPRQPAPLRRRRHP------HRRRQPLHHFLRPHSQTLQT 304
Query: 170 SHPNLHR------DRDGG----GMERRGARSRETAKRDRETMDHHHALHLPPQIPEP 216
H +R G G RG + R R T A+ P +P P
Sbjct: 305 LRHEQHNSQVPAPERGSGRVDLGHHGRGRGEHDGRVRPRRTQS-EPAIGAAPALPLP 472
>BF424389
Length = 223
Score = 32.0 bits (71), Expect = 0.25
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = +1
Query: 132 PQPTTFTLSTEPRKTDKRRRRRDP 155
P+PTT LST P K RRRR P
Sbjct: 130 PEPTTAPLSTSPEKASSFRRRRTP 201
>TC208277 similar to UP|Q9W4V3 (Q9W4V3) CG14419-PA (RH61722p), partial (10%)
Length = 671
Score = 31.6 bits (70), Expect = 0.33
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +2
Query: 129 PPPPQPTTFTLSTEPRKTDKRRRRR 153
PPPP TT TLSTEP + R
Sbjct: 167 PPPPPTTTSTLSTEPNNNNNNNNNR 241
>TC213266
Length = 712
Score = 31.6 bits (70), Expect = 0.33
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 21/98 (21%)
Frame = +3
Query: 123 HRQQQQPPPPQPTTFTLSTEPRKTDKR---------------RRRRDPGKEIERDREPPI 167
H+ ++PP + T+TLS +KT R R R +E ER+RE
Sbjct: 9 HQSGRKPPFTKQYTYTLSQIQKKTPFRKPSNLLPSNQSLLLQREGRS*ARERERERESRR 188
Query: 168 ETSHPNLHRDRDGGG------MERRGARSRETAKRDRE 199
+ +H L G G ER+ +RE KR+RE
Sbjct: 189 KRTH-RLTEAAAGSGW*RPASSERQRTATRERPKRERE 299
>TC232596 similar to GB|AAP37848.1|30725652|BT008489 At2g29650 {Arabidopsis
thaliana;} , partial (7%)
Length = 513
Score = 31.2 bits (69), Expect = 0.43
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Frame = +3
Query: 123 HRQQQQPPPPQPTTFTLST-----EPRKTDKRRRRRDPGK-EIERDR 163
H P PP P T +T EP + +RRRR D GK E+ +R
Sbjct: 177 HSSTLAPKPPPPCNSTFATPPLAAEPPRCCRRRRREDVGKCEVREER 317
>TC227700 similar to UP|Q8L7Y9 (Q8L7Y9) At1g07230/F10K1_4
(Phosphatidylglycerol specific phospholipase C), partial
(84%)
Length = 1771
Score = 31.2 bits (69), Expect = 0.43
Identities = 23/94 (24%), Positives = 36/94 (37%)
Frame = -2
Query: 110 LNPATQQPYNLHEHRQQQQPPPPQPTTFTLSTEPRKTDKRRRRRDPGKEIERDREPPIET 169
L PA+ + H H ++ PP P T S++PR R R P + P +
Sbjct: 801 LLPASPHDHKTH-HAHRK*SAPPSPPTADSSSKPRTPPSRTSARPP-RHARGGHRSPEKP 628
Query: 170 SHPNLHRDRDGGGMERRGARSRETAKRDRETMDH 203
H + R+ T++R R T+ H
Sbjct: 627 PHRSTSAPPPRSSEASPSRRAS*TSRRSRGTLPH 526
>BM523406 homologue to PIR|T07623|T076 extensin homolog HRGP2 - soybean
(fragment), partial (30%)
Length = 399
Score = 31.2 bits (69), Expect = 0.43
Identities = 30/89 (33%), Positives = 39/89 (43%), Gaps = 12/89 (13%)
Frame = +3
Query: 149 RRRRRDPGKEIERDREPPIETSHPNLHRDRDGGGMERRGARSRETAKRDRETMDHHHALH 208
R R R+ +E ER+RE E R+R+ ER R RE +R+RE HH LH
Sbjct: 3 RERERERERERERERERERE-------RERE---RERERERERER-ERERER*ALHHLLH 149
Query: 209 L------------PPQIPEPTFALGFLRL 225
L PQ+P P+ L L
Sbjct: 150 LLLHHTITHHHLFLPQLPLPSTFTNHLHL 236
>TC213243 homologue to UP|O49504 (O49504) BZIP transcription factor-like
protein, partial (6%)
Length = 467
Score = 31.2 bits (69), Expect = 0.43
Identities = 15/40 (37%), Positives = 20/40 (49%), Gaps = 2/40 (5%)
Frame = +1
Query: 106 PIFTLNPATQQPYNLHEHRQQQQPPP--PQPTTFTLSTEP 143
P +LN Q H+H+ QQ PPP P+P T + P
Sbjct: 259 PPLSLNSNHSQRQAQHQHQHQQHPPPLFPKPANVTFAGAP 378
>TC222434 homologue to UP|Q8LP37 (Q8LP37) PlCYC3 protein (Fragment), partial
(60%)
Length = 1246
Score = 30.8 bits (68), Expect = 0.56
Identities = 26/75 (34%), Positives = 36/75 (47%), Gaps = 1/75 (1%)
Frame = +3
Query: 123 HRQQQQPPPPQPTTF-TLSTEPRKTDKRRRRRDPGKEIERDREPPIETSHPNLHRDRDGG 181
H+ + P PQP T+ +K+D+ +R+R PGK RDR I T+ G
Sbjct: 255 HQSLPKDPVPQPAVITTMDPFVKKSDQIQRKR-PGK---RDRHSKINTAR---------G 395
Query: 182 GMERRGARSRETAKR 196
+RR S E AKR
Sbjct: 396 LRDRRMRLSLEVAKR 440
>BG509681 similar to EGAD|98465|10647 7 kDa photosystem ii core complex
protein {Spinacia oleracea}, partial (72%)
Length = 396
Score = 30.8 bits (68), Expect = 0.56
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Frame = +2
Query: 119 NLHEHRQQQQPPPPQP------TTFTLSTEPRKTDKRRRRRDPGKEIERDREPPIETSHP 172
N H+ RQ +QP PQP TF L +P K R + + +R
Sbjct: 74 NGHDQRQMRQPKVPQPHQGGAIKTFPLG-QPSKGPNSRSGQHQTPHCDSNR-------RS 229
Query: 173 NLHRDRDGGGMERRGARSRETAKR 196
N+H R+ +RR SR + +R
Sbjct: 230 NIHNPRNLRHKKRRSTNSRHSRRR 301
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.318 0.138 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,520,888
Number of Sequences: 63676
Number of extensions: 222754
Number of successful extensions: 3519
Number of sequences better than 10.0: 214
Number of HSP's better than 10.0 without gapping: 3012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3339
length of query: 237
length of database: 12,639,632
effective HSP length: 94
effective length of query: 143
effective length of database: 6,654,088
effective search space: 951534584
effective search space used: 951534584
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Lotus: description of TM0010.17