BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0010.15
(268 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC229195 similar to UP|Q9SJN3 (Q9SJN3) Expressed protein (At2g36... 274 3e-74
TC209935 273 8e-74
AW350126 129 1e-30
BM093591 similar to GP|15450733|gb| At2g36220/F2H17.17 {Arabidop... 72 3e-13
BU090741 homologue to GP|19911575|dbj syringolide-induced protei... 40 0.001
TC231428 UP|Q8S901 (Q8S901) Syringolide-induced protein 14-1-1, ... 38 0.005
TC220904 homologue to GB|AAS47665.1|44681450|BT011659 At5g03110 ... 35 0.027
TC211379 similar to UP|Q8S901 (Q8S901) Syringolide-induced prote... 33 0.10
TC209606 similar to UP|Q7M1N9 (Q7M1N9) Transformer-2-like protei... 33 0.18
TC205105 weakly similar to UP|SP4_HUMAN (Q02446) Transcription f... 30 1.1
TC217190 similar to UP|Q761Z6 (Q761Z6) BRI1-KD interacting prote... 30 1.5
TC213832 similar to UP|AGA1_YEAST (P32323) A-agglutinin attachme... 30 1.5
TC220645 weakly similar to UP|AR3A_HUMAN (Q99856) AT-rich intera... 30 1.5
TC205533 similar to GB|AAL32012.1|16930693|AF436830 AT3g07810/F1... 30 1.5
TC210126 similar to UP|NUCL_HUMAN (P19338) Nucleolin (Protein C2... 29 1.9
TC223730 similar to UP|Q7SIC9 (Q7SIC9) Transferase, partial (29%) 29 1.9
TC208044 29 2.5
BI427452 29 2.5
TC219663 similar to GB|AAA36308.1|386949|HUMMHRD5 MHC HLA-RD pro... 28 3.3
>TC229195 similar to UP|Q9SJN3 (Q9SJN3) Expressed protein
(At2g36220/F2H17.17), partial (18%)
Length = 1194
Score = 274 bits (700), Expect = 3e-74
Identities = 169/298 (56%), Positives = 192/298 (63%), Gaps = 36/298 (12%)
Frame = +3
Query: 5 ETLVSACAGGSIDRKITCETLANKTDPPERHPDSPPESFWLSKDEEHDWFDRNALYERKE 64
ETLVSACAGG D+KI CE A++ D R PDSPPESFWLS D E+DW+DRNA+YER E
Sbjct: 201 ETLVSACAGGCSDQKIACEPHADEGDHGGRLPDSPPESFWLSGDAEYDWWDRNAVYERNE 380
Query: 65 STKGST--------SSSTTNSQRFSLNLKSR--IIGLPKPQKPSFTDAKNRRNHKPCNNI 114
STKG++ S+S NSQRFS NLKS+ IIGLPKPQK +F DAK+RRNH+P N
Sbjct: 381 STKGNSIISSTNLNSNSNNNSQRFSKNLKSKAAIIGLPKPQKATFADAKSRRNHRPPGNA 560
Query: 115 KLFPKRSVSV-TKSVTSHAEPSSPKVSCMGRVRSKRDRSRSRSLRLRNSRKSSIDAGEEN 173
+LFPKRS SV K S EPSSPKVSC+GRVRSKRD R+R LR R SS A
Sbjct: 561 RLFPKRSASVGGKLEGSVVEPSSPKVSCIGRVRSKRD--RNRRLRTRQRSISSSTATAAT 734
Query: 174 PGRIG-------------RKHGFFERFRAIFRSGRRKKAHRETDSAAEDSTVTNSV---- 216
G I +K GFFE RAIFR GRR K ++ D EDS+ +
Sbjct: 735 TGSISSAVTRQKSTRSQRKKTGFFESVRAIFRHGRRGKPVQKPDLPQEDSSSSKMKKKRS 914
Query: 217 --VKARDSTASV----NDASFAESISS--EPPGLGGMMRFASGRRSESWGVGESEIHV 266
KAR ST S NDASF ES SS PPGLG + RFASGRRSESWGVG+SEI V
Sbjct: 915 YGKKARGSTTSSTTNRNDASFEESFSSAAPPPGLGSVNRFASGRRSESWGVGDSEIRV 1088
>TC209935
Length = 850
Score = 273 bits (697), Expect = 8e-74
Identities = 155/248 (62%), Positives = 180/248 (72%), Gaps = 22/248 (8%)
Frame = +3
Query: 1 MQQAETLVSACAGGSIDRKITCETLANK---TDPPERHPDSPPESFWLSKDEEHDWFDRN 57
M Q E+LVSACAGGS DRKI CETLA+ TDPPE HPDSPPESFWLS+DEE+DW+DRN
Sbjct: 117 MLQVESLVSACAGGSSDRKIACETLADDVHPTDPPESHPDSPPESFWLSRDEEYDWWDRN 296
Query: 58 ALYERKESTKGSTSSSTT---------NSQRFSLNLKSR---IIGLPKPQKPSFTDAKNR 105
A+YERKESTK S ++ST NSQRFSLN KS+ IIGLPKPQK SF D KNR
Sbjct: 297 AVYERKESTKASNNNSTNLNPGINSSNNSQRFSLNFKSKASTIIGLPKPQKTSFVDVKNR 476
Query: 106 RNHKPCNNIKLFPKRSVSVTKSVTSHAEPSSPKVSCMGRVRSKRDRSRSRSLRLRNSRKS 165
RNH +NI+LFPKRSVSV KS + EPSSPKVSCMGRVRSKRDR+R +LR+SRKS
Sbjct: 477 RNHNKPSNIRLFPKRSVSVGKSESGLVEPSSPKVSCMGRVRSKRDRNR----KLRSSRKS 644
Query: 166 SIDA-GEENPGRIGRKHGFFERFRAIFRSGRRKKAHR-ETDSAAEDSTVTN-----SVVK 218
S D +E R G+K GFFE FR+IFRSGR+ K R ++D A DST + +
Sbjct: 645 SPDTDAKEKHSRSGKKPGFFESFRSIFRSGRKGKPDRKKSDPLAADSTHETKSGAVNYSR 824
Query: 219 ARDSTASV 226
AR ST+S+
Sbjct: 825 ARHSTSSL 848
>AW350126
Length = 649
Score = 129 bits (325), Expect = 1e-30
Identities = 77/137 (56%), Positives = 96/137 (69%), Gaps = 14/137 (10%)
Frame = -2
Query: 145 VRSKRDRSRSRSLRLRNSRKSSIDA-GEENPGRIGRKHGFFERFRAIFRSGRRKKAHRE- 202
VRSKRDR+R +LR+SRKSS + +E P R G+K+GFFE FR+IFRSGR+ K+ R+
Sbjct: 648 VRSKRDRNR----KLRSSRKSSPNTDAKEKPNRNGKKYGFFESFRSIFRSGRKDKSDRKK 481
Query: 203 TDSAAEDSTVT------NSVVKARDSTASVNDASFAESIS------SEPPGLGGMMRFAS 250
TD A DS + N +AR ST+S+N+ S E +S SEPPGLGGMMRFAS
Sbjct: 480 TDLLATDSNIETKSGAINYSSRARHSTSSLNEVSLEEPVSRNSVSESEPPGLGGMMRFAS 301
Query: 251 GRRSESWGVGESEIHVS 267
GRRSESWGVG+SE HV+
Sbjct: 300 GRRSESWGVGDSEGHVA 250
>BM093591 similar to GP|15450733|gb| At2g36220/F2H17.17 {Arabidopsis
thaliana}, partial (5%)
Length = 407
Score = 71.6 bits (174), Expect = 3e-13
Identities = 43/77 (55%), Positives = 47/77 (60%), Gaps = 2/77 (2%)
Frame = +3
Query: 193 SGRRKKAHRETDSAAEDSTVTNSVVKARDSTASVNDASFAESISSE--PPGLGGMMRFAS 250
S +KK R A ST ST S NDASF ES+SS PPGLG M RFAS
Sbjct: 9 SSSKKKKKRSLGKKAWGSTT--------GSTRSRNDASFEESVSSAAAPPGLGSMNRFAS 164
Query: 251 GRRSESWGVGESEIHVS 267
GRRSESWGVG+ EIH+S
Sbjct: 165 GRRSESWGVGDYEIHMS 215
>BU090741 homologue to GP|19911575|dbj syringolide-induced protein 14-1-1
{Glycine max}, partial (12%)
Length = 401
Score = 40.0 bits (92), Expect = 0.001
Identities = 29/124 (23%), Positives = 52/124 (41%)
Frame = +3
Query: 133 EPSSPKVSCMGRVRSKRDRSRSRSLRLRNSRKSSIDAGEENPGRIGRKHGFFERFRAIFR 192
EP+SPK+SCMG+++ K+ +++ S+ + R + +KH + +F
Sbjct: 42 EPTSPKISCMGQIKHKKGGAKNMSMSMPTPRDPEV-----------KKHASKFQRMLLFH 188
Query: 193 SGRRKKAHRETDSAAEDSTVTNSVVKARDSTASVNDASFAESISSEPPGLGGMMRFASGR 252
+G+ K++ + ES + P +G M RFASGR
Sbjct: 189 AGKPKQSDADV-----------------------------ESERAPAPPMGHMRRFASGR 281
Query: 253 RSES 256
+ S
Sbjct: 282 ETFS 293
>TC231428 UP|Q8S901 (Q8S901) Syringolide-induced protein 14-1-1, complete
Length = 1150
Score = 37.7 bits (86), Expect = 0.005
Identities = 40/187 (21%), Positives = 77/187 (40%), Gaps = 18/187 (9%)
Frame = +1
Query: 84 LKSRII-GLPKPQKPSFTDAKNR-----RNHKPCNNIKLFPKRSVSVTKSVTSHA----- 132
+KS+I+ LPK +N R+HK + + P + T ++
Sbjct: 124 MKSKILKALPKAVAAVTVTFQNHPFSPGRDHKSKPIVSMIPHEARRKTHDRGNNGIDEIY 303
Query: 133 --EPSSPKVSCMGRVRSKRDRSRSRSLRLRNSRKSSIDAGEENPGRIGR-----KHGFFE 185
EP+SPK+SCMG+++ K+ + + + ++ K + + + R KH
Sbjct: 304 SQEPTSPKISCMGQIKHKKKQIKKSKSKSKSMTKEARNVASKKTSSASRDIEVKKHVSTF 483
Query: 186 RFRAIFRSGRRKKAHRETDSAAEDSTVTNSVVKARDSTASVNDASFAESISSEPPGLGGM 245
+F + K R+++++A + ++ DA+ A +S M
Sbjct: 484 HKMLLFHGAKPKSEGRKSNASAPGDI---------NKDLALADAARAPRVSQ-------M 615
Query: 246 MRFASGR 252
RF+SGR
Sbjct: 616 RRFSSGR 636
>TC220904 homologue to GB|AAS47665.1|44681450|BT011659 At5g03110 {Arabidopsis
thaliana;} , partial (7%)
Length = 708
Score = 35.4 bits (80), Expect = 0.027
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = +3
Query: 133 EPSSPKVSCMGRVRSKRDRSR 153
EPSSPKV+CMG+VR KR S+
Sbjct: 339 EPSSPKVTCMGQVRVKRSASK 401
>TC211379 similar to UP|Q8S901 (Q8S901) Syringolide-induced protein 14-1-1,
partial (16%)
Length = 457
Score = 33.5 bits (75), Expect = 0.10
Identities = 23/77 (29%), Positives = 44/77 (56%), Gaps = 1/77 (1%)
Frame = +3
Query: 133 EPSSPKVSCMGRVRSKRDRSRSRSLRLRNSRKSSIDAGEENPGRIGRKHGFFERFRAIFR 192
EP+SPK+SCMG+++ K+ ++ +++ + K+ EE ++ F+R + F
Sbjct: 249 EPTSPKISCMGQIKHKKKKN-----QIKKAAKTMSMPTEEK-----KQASKFQRMMS-FH 395
Query: 193 SGRRKK-AHRETDSAAE 208
SG+ K+ A R+ S A+
Sbjct: 396 SGKPKRPAARKQQSDAD 446
>TC209606 similar to UP|Q7M1N9 (Q7M1N9) Transformer-2-like protein, partial
(30%)
Length = 452
Score = 32.7 bits (73), Expect = 0.18
Identities = 18/65 (27%), Positives = 33/65 (50%)
Frame = +3
Query: 111 CNNIKLFPKRSVSVTKSVTSHAEPSSPKVSCMGRVRSKRDRSRSRSLRLRNSRKSSIDAG 170
C + + + + ++S+ + +P+ + VRS+R RS+S S R+ +S A
Sbjct: 45 CGSFTVST*QIILFSQSLNVMSSAKTPRSASPSPVRSRRSRSKSLSRSRRSRSRSQDSAD 224
Query: 171 EENPG 175
ENPG
Sbjct: 225 VENPG 239
>TC205105 weakly similar to UP|SP4_HUMAN (Q02446) Transcription factor Sp4
(SPR-1), partial (3%)
Length = 916
Score = 30.0 bits (66), Expect = 1.1
Identities = 39/145 (26%), Positives = 53/145 (35%), Gaps = 16/145 (11%)
Frame = +2
Query: 80 FSLNLKSRIIGLPKPQKPSFTDAKNRR------------NHKPCNNIKLFPKRSVSVTKS 127
F NL+ + +P P PS AKN++ N P N L P S S
Sbjct: 56 FLFNLEYHKLKIPNPCVPSTDFAKNKKISRAGTTFPQTINSNPPNFHNLQPSNSAS--PF 229
Query: 128 VTSHAEPSSPKVSCMGRVRSKRDRSRSRSLRLRNSR-KSSIDAGEE---NPGRIGRKHGF 183
S + + G R R R R R RL R ++ + AG + P +G HG
Sbjct: 230 FISLQRERTKQNGRRGDRRQHRARLRERRNRLHQERGRAVLGAGPQQRRRPLALGAPHGL 409
Query: 184 FERFRAIFRSGRRKKAHRETDSAAE 208
R A R R + +A E
Sbjct: 410 --RVHAPHRDALRHRRFHAAGAARE 478
>TC217190 similar to UP|Q761Z6 (Q761Z6) BRI1-KD interacting protein 118
(Fragment), partial (32%)
Length = 1637
Score = 29.6 bits (65), Expect = 1.5
Identities = 47/226 (20%), Positives = 88/226 (38%), Gaps = 14/226 (6%)
Frame = +2
Query: 9 SACAGGSIDRKITCETLANKTDPPERHPDSPPESFWL-----SKDEEHDWFDRNA-LYER 62
+A G+++ I ++ A E + ++ ++ SK+EE + DR L
Sbjct: 5 TAATNGNLENFIQYDSTATDYSSKEEIKEGSNDNIYMNNVTISKEEEAEIIDRTEQLKVG 184
Query: 63 KESTKGSTSSSTTNSQRFSLNLKSRIIGLPKPQKPSFTD---AKNRRNHKPCNNIKLFPK 119
K K + + + ++K G + S ++ A + +P N L K
Sbjct: 185 KGPAKNKNAKPPSPRGSHASSVKKNKDGKDEEVASSVSNGTFASDSHPRQPIKNRSLSDK 364
Query: 120 R---SVSVTKSVTSHAEPSSPKVSCMGRVRSKRDRSRSRSLRLRNSRKSSIDAGEENPGR 176
+ S KS +H+E S K + D + + SS A + P R
Sbjct: 365 QARLSKHPGKSNAAHSEESMEKTRPQLSKKDPHDNLQGEA------ESSSPTAEDAKPRR 526
Query: 177 IGR--KHGFFERFRAIFRSGRRKKAHRETDSAAEDSTVTNSVVKAR 220
+G K+GF F+ R+ RRK+ + + + V S ++A+
Sbjct: 527 VGALPKYGF--SFKCDERAERRKEFYTKLEEKIHAKEVEESNLQAK 658
>TC213832 similar to UP|AGA1_YEAST (P32323) A-agglutinin attachment subunit
precursor, partial (4%)
Length = 751
Score = 29.6 bits (65), Expect = 1.5
Identities = 25/85 (29%), Positives = 41/85 (47%), Gaps = 19/85 (22%)
Frame = +3
Query: 91 LPKPQ-KPSFTDAKNRRNHKPCNNIK-----------------LFPKRSVSVTKSVTSH- 131
+PKP P+ N+R+H ++ K L+PK TKS+ S
Sbjct: 84 MPKPICSPARPSEPNKRHHNSHHHRKKSFSRGGGGGGGQASPLLWPK-----TKSMGSEI 248
Query: 132 AEPSSPKVSCMGRVRSKRDRSRSRS 156
+EP+SPKV+C G+++ + + RS
Sbjct: 249 SEPTSPKVTCAGQMKVRPKTTACRS 323
>TC220645 weakly similar to UP|AR3A_HUMAN (Q99856) AT-rich interactive
domain-containing protein 3A (ARID domain-containing
protein 3A) (B-cell regulator of IgH transcription)
(Bright) (E2F binding protein 1), partial (3%)
Length = 857
Score = 29.6 bits (65), Expect = 1.5
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -2
Query: 171 EENPGRIGRKHGFFERFRAIFRSGRRKKAHRETDSAAE 208
E + R+G +HGF R F GRR+ R+ S AE
Sbjct: 415 EVDVARVGGRHGFGAGGRLRFGFGRRRNRRRQASSDAE 302
>TC205533 similar to GB|AAL32012.1|16930693|AF436830 AT3g07810/F17A17_15
{Arabidopsis thaliana;} , partial (4%)
Length = 832
Score = 29.6 bits (65), Expect = 1.5
Identities = 35/143 (24%), Positives = 54/143 (37%), Gaps = 11/143 (7%)
Frame = -3
Query: 22 CETLANKTDPP--------ERHPDSPPESFWLSKDEEHDWFDRNALYERKESTKGSTSSS 73
CE NKT RHP S +++ E H FD++ +Y RKE K T ++
Sbjct: 767 CEKKTNKTVQQLNYLMGILHRHPTQV--SHLINQTEPHLQFDQSYIYHRKEKKKMVTRTN 594
Query: 74 TTNSQRFSLNLKSRIIGLPKPQKPSFTDAKNRRNHKPCNNIKLFPKRSVSVTKSVTSHAE 133
T Q K KP+ + +R C + K S ++ H
Sbjct: 593 TFACQALQRQKKQEFKN**SNIKPTNDEDPLQR----CTITLSWNKSS*VYPANLILHLN 426
Query: 134 P---SSPKVSCMGRVRSKRDRSR 153
P PK M R +++R + +
Sbjct: 425 PIPRKEPKS*KMKRTKTRRKKKK 357
>TC210126 similar to UP|NUCL_HUMAN (P19338) Nucleolin (Protein C23), partial
(7%)
Length = 735
Score = 29.3 bits (64), Expect = 1.9
Identities = 23/76 (30%), Positives = 31/76 (40%)
Frame = -3
Query: 65 STKGSTSSSTTNSQRFSLNLKSRIIGLPKPQKPSFTDAKNRRNHKPCNNIKLFPKRSVSV 124
S+ S+SSS+ +S SL+L S LP P + + N P S S
Sbjct: 559 SSSSSSSSSSPSSSSSSLSLSSSSSSLPPPLASGSSSGSPSSSPSSPENSSSSPSSS*SC 380
Query: 125 TKSVTSHAEPSSPKVS 140
S +S SS VS
Sbjct: 379 PSSSSSSPSLSSSSVS 332
>TC223730 similar to UP|Q7SIC9 (Q7SIC9) Transferase, partial (29%)
Length = 865
Score = 29.3 bits (64), Expect = 1.9
Identities = 22/78 (28%), Positives = 30/78 (38%)
Frame = +2
Query: 92 PKPQKPSFTDAKNRRNHKPCNNIKLFPKRSVSVTKSVTSHAEPSSPKVSCMGRVRSKRDR 151
P P PS + + H P + P S S S +P +P+ S RS
Sbjct: 62 PPPPPPSASPPLSALPHPPSPSAAASPPPSAPPPPSKPSRRQPRTPRWSKNPSTRSASSP 241
Query: 152 SRSRSLRLRNSRKSSIDA 169
S R+R +R S DA
Sbjct: 242 STPSRRRIRVTRGSPWDA 295
>TC208044
Length = 802
Score = 28.9 bits (63), Expect = 2.5
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +3
Query: 92 PKPQKPSFTDAKNRRNHKPCN-NIKLFPKRSVSVTKSVTSHAEPSSPKVS 140
PKP+KP +R + + RS+SVT + T HA+P P ++
Sbjct: 60 PKPEKPLQKHPSSRYPSSAAKPDFETTINRSMSVTATATRHADPRFPSLT 209
>BI427452
Length = 434
Score = 28.9 bits (63), Expect = 2.5
Identities = 23/100 (23%), Positives = 41/100 (41%)
Frame = +3
Query: 64 ESTKGSTSSSTTNSQRFSLNLKSRIIGLPKPQKPSFTDAKNRRNHKPCNNIKLFPKRSVS 123
++ + STS STT S R + + K+ + P PS NH P ++ + P + +
Sbjct: 90 KTLESSTSISTTPSPRATTSSKNSCFPMIPPSAPS--------NHAPASSFRTPPSSTFN 245
Query: 124 VTKSVTSHAEPSSPKVSCMGRVRSKRDRSRSRSLRLRNSR 163
+ + S +P++ C R R+R R
Sbjct: 246 FSSTTMSR----NPRLLCCFATGPARSLPMPPRFRMRFGR 353
>TC219663 similar to GB|AAA36308.1|386949|HUMMHRD5 MHC HLA-RD protein {Homo
sapiens;} , partial (14%)
Length = 1176
Score = 28.5 bits (62), Expect = 3.3
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 3/116 (2%)
Frame = -3
Query: 62 RKESTKGSTSSSTTNSQRFSLNLKSRIIGLPKPQKPSFTDAKNRRNHKPCN---NIKLFP 118
R+ GS +S + + R +SR LP+ + S +++R + ++ LF
Sbjct: 577 RERPRSGSPTS*SLSLSRCRSYSRSRSRSLPRSRSRSRVLSRSRPRSLSLSLSRSLSLFL 398
Query: 119 KRSVSVTKSVTSHAEPSSPKVSCMGRVRSKRDRSRSRSLRLRNSRKSSIDAGEENP 174
RS+ S+ S + S + S RDRSRS SL L SR S+ + +P
Sbjct: 397 SRSLWCLSSL*SRSLTLS*ECS--------RDRSRSLSLSLPLSRDISLSLDDLSP 254
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.311 0.126 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,377,291
Number of Sequences: 63676
Number of extensions: 157247
Number of successful extensions: 1007
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of query: 268
length of database: 12,639,632
effective HSP length: 96
effective length of query: 172
effective length of database: 6,526,736
effective search space: 1122598592
effective search space used: 1122598592
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0010.15