BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0010.11
(1573 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 543 e-154
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 529 e-150
CO982036 217 4e-56
BU548243 196 7e-50
BE211208 183 5e-46
BF068614 similar to GP|27817858|db OJ1081_B12.7 {Oryza sativa (j... 105 6e-42
BQ081067 weakly similar to GP|23495377|dbj orf490 {Oryza sativa ... 122 4e-39
BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vi... 160 5e-39
AI855899 similar to GP|2244960|emb| retrotransposon like protein... 159 7e-39
TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Frag... 156 6e-38
CO984748 154 4e-37
AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza ... 149 1e-35
TC234303 weakly similar to UP|Q8W153 (Q8W153) Polyprotein, parti... 147 3e-35
CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {V... 147 3e-35
TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polypro... 147 4e-35
BQ273297 92 9e-34
BU548265 homologue to GP|18000935|gb| cytochrome b {Mabuya delal... 139 7e-33
BM307983 130 3e-30
BF595216 78 5e-30
TC211311 weakly similar to UP|O24587 (O24587) Pol protein, parti... 97 2e-28
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 543 bits (1399), Expect = e-154
Identities = 361/1132 (31%), Positives = 572/1132 (49%), Gaps = 12/1132 (1%)
Frame = +1
Query: 445 PRAPAPQIRAPHAMLASAPSTLGNWHPDSGATHHVTHDASAISDGMSVTGNDQVYMGNGQ 504
P+ A + ++ ASA +W+ DSG + H+T + +++ Y+ G
Sbjct: 1621 PKHKAVSLVVHTSLRASAKE---DWYLDSGCSRHMTGVKEFL---LNIEPCSTSYVTFGD 1782
Query: 505 GLPIQSIGSASFSSPIHTQTTLLLKNLLLVPNITKNLVSVSKFAQDNGVYFEFHPFHCTV 564
G + IG +H L K +LLV +T NL+S+S+ D G F C V
Sbjct: 1783 GSKGKIIGMGKL---VHDGLPSLNK-VLLVKGLTANLISISQLC-DEGFNVNFTKSECLV 1947
Query: 565 NSQDTCKTLLRGSLGSDGLYSFDGMHSSNFHKDLPQVPVSSAFSLSKPASPAVNTIVSTS 624
++ + + L++GS D Y + P +++S +T +S+
Sbjct: 1948 TNEKS-EVLMKGSRSKDNCYLW--------------TPQETSYS---------STCLSSK 2055
Query: 625 NNVPSPTAYDLWHSRLGHPHYEALQSAL---TTCKIPVPHKSKYTICHSCCVAKSHRLPS 681
+ +WH R GH H ++ + IP + IC C + K ++
Sbjct: 2056 ED-----EVRIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSH 2220
Query: 682 SASSTLYTAP-LELIFADLWGPASIESSAGYSYFLTCVDAFSRFTWIYLLKRKSETSTVF 740
T+ LEL+ DL GP +ES G Y VD FSRFTW+ ++ KSET VF
Sbjct: 2221 QKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSETFEVF 2400
Query: 741 IQFQAMVELKFGLKIKSVQTDGGTEFKP--LLPHFLKLGITHRLTCPHTHHQNGSVERKH 798
+ ++ + IK +++D G EF+ GITH + T QNG VERK+
Sbjct: 2401 KELSLRLQREKDCVIKRIRSDHGREFENSRFTEFCTSEGITHEFSAAITPQQNGIVERKN 2580
Query: 799 RHIVETGLSLLACANMPTSYWDHAFLTATFLINRLPTPVLGNLSPYHKLFKV-PADYKIL 857
R + E +L +P + W A TA ++ NR+ T G + ++++K K
Sbjct: 2581 RTLQEAARVMLHAKELPYNLWAEAMNTACYIHNRV-TLRRGTPTTLYEIWKGRKPSVKHF 2757
Query: 858 RVFGSACYPHLRPYNSSKLSFRSQECVFLGYSSSHKGYKCLASDGRIYISKDVQFNEFKF 917
+FGS CY K+ +S +FLGYS++ + Y+ S R +
Sbjct: 2758 HIFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVME---------- 2907
Query: 918 PYSTLFSSEFPASNPSSVSSVIPVISYVPSLQQPIPSPHHSHPTGISSPNSVDSLQSMPN 977
S++ V+ +S P S N D+ +S N
Sbjct: 2908 ----------------SINVVVDDLS-------PARKKDVEEDVRTSGDNVADAAKSGEN 3018
Query: 978 SPVHSAATVSEHPAASGTVSPNAVSSTSSSDHFASASSIP----ATTTGSSQPQQVTNVH 1033
+ +AT S P+ SST I TT S + + V+N
Sbjct: 3019 AENSDSATDE-----SNINQPDKRSSTRIQKMHPKELIIGDPNRGVTTRSREVEIVSN-- 3177
Query: 1034 PMQTRAKSGIVKPRLLPTLLLAQAEPVTTKHALKDPTWMAAMKSEYDALMSNNTWTLVTL 1093
+ +++ EP K AL D W+ AM+ E + N W LV
Sbjct: 3178 -----------------SCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPR 3306
Query: 1094 PKGRHPIGCKWVFRIKENADGSVNRYKARLVAKGYHQVKGFDYAETFSPVVKPITIRLIL 1153
P+G + IG KW+F+ K N +G + R KARLVA+GY Q++G D+ ETF+PV + +IRL+L
Sbjct: 3307 PEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLL 3486
Query: 1154 TLAVSKRWHIHQLDVNNAFLHGALQEEVYMQQPAGFQN-SDKTLVCKLNKALYGLKQAPR 1212
+A ++ ++Q+DV +AFL+G L EEVY++QP GF + + V +L KALYGLKQAPR
Sbjct: 3487 GVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKALYGLKQAPR 3666
Query: 1213 AWFDRLKAALVKYGFKASCCDPSLFTFHNKSNVIYILVYVDDIIITGNFLPFIQEVVQKL 1272
AW++RL L + G++ D +LF + N++ +YVDDI+ G ++ VQ++
Sbjct: 3667 AWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQM 3846
Query: 1273 NSEFALKQLGQLDYFLGVQVHHLQDRSLLLTQTKYIGDLLERADMAEAKGISTPMVSGAR 1332
SEF + +G+L YFLG+QV ++D S+ L+Q++Y +++++ M A TP + +
Sbjct: 3847 QSEFEMSLVGELTYFLGLQVKQMED-SIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLK 4023
Query: 1333 LSKHGADYFSDPTLYRSIVGALQYATLTRPEISFSVNKVCQFLSQPLEEHWKAVKRILRY 1392
LSK A D +LYRS++G+L Y T +RP+I+++V ++ + P H VKRIL+Y
Sbjct: 4024 LSKDEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLTQVKRILKY 4203
Query: 1393 LKGTIHHGLHIRPCSLHSPVSLVAYCDADWGSDPDDRRSTSGSCVFFGPNLVTWTSKKQT 1452
+ GT +G+ CS +P+ LV YCDADW DDR+STSG C + G NL++W SKKQ
Sbjct: 4204 VNGTSDYGIMYCHCS--NPM-LVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQN 4374
Query: 1453 LVARSSTEAEYRSLANTSAELLWIQSLLQELQVPFTVPKVFCDNMGAVALTHNPVLHTRT 1512
V+ S+ EAEY + ++ ++L+W++ +L+E V V ++CDNM A+ ++ NPV H+RT
Sbjct: 4375 CVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRT 4554
Query: 1513 KHMELDIFFVREKVQNQSLFVHHVPSVDQIADIFTKALSPTRFEDLRSKLNV 1564
KH+++ ++R+ V ++ + + HV + +QIADIFTKAL +FE LR KL +
Sbjct: 4555 KHIDIRHHYIRDLVDDKVITLKHVDTEEQIADIFTKALDANQFEKLRGKLGI 4710
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 529 bits (1363), Expect = e-150
Identities = 349/1105 (31%), Positives = 545/1105 (48%), Gaps = 8/1105 (0%)
Frame = +1
Query: 468 NWHPDSGATHHVTHDASAISDGMSVTGNDQVYMGNGQGLPIQSIGSASFSSPIHTQTTLL 527
+W+ DSG + H+T + + + V G+G I +G +H L
Sbjct: 1684 DWYLDSGCSRHMTGVKEFLVN-IEPCSTSYVTFGDGSKGKITGMGKL-----VHDGLPSL 1845
Query: 528 LKNLLLVPNITKNLVSVSKFAQDNGVYFEFHPFHCTVNSQDTCKTLLRGSLGSDGLYSFD 587
K +LLV +T NL+S+S+ D G F C V ++ + + L++GS D Y +
Sbjct: 1846 NK-VLLVKGLTANLISISQLC-DEGFNVNFTKSECLVTNEKS-EVLMKGSRSKDNCYLWT 2016
Query: 588 GMHSSNFHKDLPQVPVSSAFSLSKPASPAVNTIVSTSNNVPSPTAYDLWHSRLGHPHYEA 647
+S SS SK + WH R GH H
Sbjct: 2017 PQETS----------YSSTCLFSKEDEVKI------------------WHQRFGHLHLRG 2112
Query: 648 LQSAL---TTCKIPVPHKSKYTICHSCCVAKSHRLPSSASSTLYTAP-LELIFADLWGPA 703
++ + IP + IC C + K ++ T+ LEL+ DL GP
Sbjct: 2113 MKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPM 2292
Query: 704 SIESSAGYSYFLTCVDAFSRFTWIYLLKRKSETSTVFIQFQAMVELKFGLKIKSVQTDGG 763
+ES G Y VD FSRFTW+ ++ KS+T VF + ++ + IK +++D G
Sbjct: 2293 QVESLGGKRYAYVVVDDFSRFTWVNFIREKSDTFEVFKELSLRLQREKDCVIKRIRSDHG 2472
Query: 764 TEFK--PLLPHFLKLGITHRLTCPHTHHQNGSVERKHRHIVETGLSLLACANMPTSYWDH 821
EF+ GITH + T QNG VERK+R + E +L +P + W
Sbjct: 2473 REFENSKFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAE 2652
Query: 822 AFLTATFLINRLPTPVLGNLSPYHKLFKV-PADYKILRVFGSACYPHLRPYNSSKLSFRS 880
A TA ++ NR+ T G + ++++K K +FGS CY K+ +S
Sbjct: 2653 AMNTACYIHNRV-TLRRGTPTTLYEIWKGRKPTVKHFHIFGSPCYILADREQRRKMDPKS 2829
Query: 881 QECVFLGYSSSHKGYKCLASDGRIYISKDVQFNEFKFPYSTLFSSEFPASNPSSVSSVIP 940
+FL GY + R++ S+ +V+
Sbjct: 2830 DAGIFL-------GYSTNSRAYRVFNSR--------------------------TRTVME 2910
Query: 941 VISYVPSLQQPIPSPHHSHPTGISSPNSVDSLQSMPNSPVHSAATVSEHPAASGTVSPNA 1000
I+ V P S N D+ +S N+ +AT E P+
Sbjct: 2911 SINVVVDDLTPARKKDVEEDVRTSGDNVADTAKSAENAENSDSAT-DEPNINQPDKRPSI 3087
Query: 1001 VSSTSSSDHFASASSIPATTTGSSQPQQVTNVHPMQTRAKSGIVKPRLLPTLLLAQAEPV 1060
TT S + + V+N + +++ EP
Sbjct: 3088 RIQKMHPKELIIGDPNRGVTTRSREIEIVSN-------------------SCFVSKIEPK 3210
Query: 1061 TTKHALKDPTWMAAMKSEYDALMSNNTWTLVTLPKGRHPIGCKWVFRIKENADGSVNRYK 1120
K AL D W+ AM+ E + N W LV P+G + IG KW+F+ K N +G + R K
Sbjct: 3211 NVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNK 3390
Query: 1121 ARLVAKGYHQVKGFDYAETFSPVVKPITIRLILTLAVSKRWHIHQLDVNNAFLHGALQEE 1180
ARLVA+GY Q++G D+ ETF+PV + +IRL+L +A ++ ++Q+DV +AFL+G L EE
Sbjct: 3391 ARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEE 3570
Query: 1181 VYMQQPAGFQN-SDKTLVCKLNKALYGLKQAPRAWFDRLKAALVKYGFKASCCDPSLFTF 1239
Y++QP GF + + V +L KALYGLKQAPRAW++RL L + G++ D +LF
Sbjct: 3571 AYVEQPKGFVDPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVK 3750
Query: 1240 HNKSNVIYILVYVDDIIITGNFLPFIQEVVQKLNSEFALKQLGQLDYFLGVQVHHLQDRS 1299
+ N++ +YVDDI+ G ++ VQ++ SEF + +G+L YFLG+QV ++D S
Sbjct: 3751 QDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQMED-S 3927
Query: 1300 LLLTQTKYIGDLLERADMAEAKGISTPMVSGARLSKHGADYFSDPTLYRSIVGALQYATL 1359
+ L+Q+KY +++++ M A TP + +LSK A D +LYRS++G+L Y T
Sbjct: 3928 IFLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIGSLLYLTA 4107
Query: 1360 TRPEISFSVNKVCQFLSQPLEEHWKAVKRILRYLKGTIHHGLHIRPCSLHSPVSLVAYCD 1419
+RP+I+++V ++ + P H VKRIL+Y+ GT +G+ CS LV YCD
Sbjct: 4108 SRPDITYAVGVCARYQANPKISHLNQVKRILKYVNGTSDYGIMYCHCS---DSMLVGYCD 4278
Query: 1420 ADWGSDPDDRRSTSGSCVFFGPNLVTWTSKKQTLVARSSTEAEYRSLANTSAELLWIQSL 1479
ADW DDR+STSG C + G NL++W SKKQ V+ S+ EAEY + ++ ++L+W++ +
Sbjct: 4279 ADWAGSADDRKSTSGGCFYLGTNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQM 4458
Query: 1480 LQELQVPFTVPKVFCDNMGAVALTHNPVLHTRTKHMELDIFFVREKVQNQSLFVHHVPSV 1539
L+E V V ++CDNM A+ ++ NPV H+RTKH+++ ++R+ V ++ + + HV +
Sbjct: 4459 LKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVITLEHVDTE 4638
Query: 1540 DQIADIFTKALSPTRFEDLRSKLNV 1564
+QIADIFTKAL +FE LR KL +
Sbjct: 4639 EQIADIFTKALDANQFEKLRGKLGI 4713
>CO982036
Length = 674
Score = 217 bits (552), Expect = 4e-56
Identities = 109/206 (52%), Positives = 144/206 (68%)
Frame = -2
Query: 1246 IYILVYVDDIIITGNFLPFIQEVVQKLNSEFALKQLGQLDYFLGVQVHHLQDRSLLLTQT 1305
+Y+LVYVD IIITG+ IQ + KLNS F LK LG+LDYF+ ++V + D LL +
Sbjct: 652 VYLLVYVD-IIITGSSCTLIQNLTSKLNSSFPLKLLGKLDYFVEIEVKSMPD--LLFSLR 482
Query: 1306 KYIGDLLERADMAEAKGISTPMVSGARLSKHGADYFSDPTLYRSIVGALQYATLTRPEIS 1365
I ++ R +A+ IS+PM + +LSK +D FS PT YRS+VGALQY T+ RPEIS
Sbjct: 481 TSIFEIFCRKPR*QAQPISSPMTTTCKLSKSDSDLFSGPTFYRSVVGALQYTTVIRPEIS 302
Query: 1366 FSVNKVCQFLSQPLEEHWKAVKRILRYLKGTIHHGLHIRPCSLHSPVSLVAYCDADWGSD 1425
F+VNKVCQF+S PL+ HW VKRILRYLKG++ +GL ++P P+ + +CDADW S
Sbjct: 301 FAVNKVCQFMSNPLDSHWTEVKRILRYLKGSLSYGL*LKPAISSQPLPIRGFCDADWASA 122
Query: 1426 PDDRRSTSGSCVFFGPNLVTWTSKKQ 1451
DD+RSTSG+ VF GPNL++W KQ
Sbjct: 121 VDDKRSTSGAAVFLGPNLISWWXXKQ 44
>BU548243
Length = 599
Score = 196 bits (498), Expect = 7e-50
Identities = 92/150 (61%), Positives = 114/150 (75%)
Frame = -1
Query: 1416 AYCDADWGSDPDDRRSTSGSCVFFGPNLVTWTSKKQTLVARSSTEAEYRSLANTSAELLW 1475
A CDA W SD DD RST GS +F GPNL++W S+KQ + A+SSTEAEYRS+A TSAEL W
Sbjct: 596 ALCDAGWASDVDDHRSTLGSAIFLGPNLISWWSRKQQVTAQSSTEAEYRSIAQTSAELTW 417
Query: 1476 IQSLLQELQVPFTVPKVFCDNMGAVALTHNPVLHTRTKHMELDIFFVREKVQNQSLFVHH 1535
IQ+LL ELQ+PFT P + CDN AVA+ HN V H+RTKHME+D+FFV EKV ++ L + H
Sbjct: 416 IQALLMELQIPFTPPVILCDNKSAVAIAHNLVFHSRTKHMEIDVFFVHEKVLSKQLQIFH 237
Query: 1536 VPSVDQIADIFTKALSPTRFEDLRSKLNVR 1565
+P++DQ A I TK LS RF L+SKL V+
Sbjct: 236 IPALDQWAGILTKPLSSARFTFLKSKLTVK 147
>BE211208
Length = 413
Score = 183 bits (465), Expect = 5e-46
Identities = 90/131 (68%), Positives = 107/131 (80%)
Frame = +2
Query: 1244 NVIYILVYVDDIIITGNFLPFIQEVVQKLNSEFALKQLGQLDYFLGVQVHHLQDRSLLLT 1303
N++Y+LVYVDDIIITG IQ +V LNS F+LKQLGQLDYFLG++VHH S+LLT
Sbjct: 20 NLVYLLVYVDDIIITGRSNYLIQSLVHHLNSNFSLKQLGQLDYFLGIEVHHTPTGSVLLT 199
Query: 1304 QTKYIGDLLERADMAEAKGISTPMVSGARLSKHGADYFSDPTLYRSIVGALQYATLTRPE 1363
Q+KYI DLL + DMAEAK IS+PMV+ RLSK+G D SDPT+YRS+VGALQY T+TRPE
Sbjct: 200 QSKYICDLLHKTDMAEAKPISSPMVTNLRLSKNGDDLLSDPTMYRSVVGALQYPTITRPE 379
Query: 1364 ISFSVNKVCQF 1374
ISF+ NKVCQF
Sbjct: 380 ISFAANKVCQF 412
>BF068614 similar to GP|27817858|db OJ1081_B12.7 {Oryza sativa (japonica
cultivar-group)}, partial (3%)
Length = 413
Score = 105 bits (263), Expect(2) = 6e-42
Identities = 51/70 (72%), Positives = 59/70 (83%)
Frame = +1
Query: 1310 DLLERADMAEAKGISTPMVSGARLSKHGADYFSDPTLYRSIVGALQYATLTRPEISFSVN 1369
DLL + MAEA+ IS+PMVS +LSK G+D F DPTLY S+VGALQYATLTRPE S+SVN
Sbjct: 202 DLLPKTKMAEAQPISSPMVSSCKLSKSGSDLFQDPTLYGSVVGALQYATLTRPEFSYSVN 381
Query: 1370 KVCQFLSQPL 1379
KVCQF+SQPL
Sbjct: 382 KVCQFMSQPL 411
Score = 85.5 bits (210), Expect(2) = 6e-42
Identities = 38/75 (50%), Positives = 56/75 (74%)
Frame = +2
Query: 1233 DPSLFTFHNKSNVIYILVYVDDIIITGNFLPFIQEVVQKLNSEFALKQLGQLDYFLGVQV 1292
DPSLF + + +++LVYVDDI ITGN + IQ+++ +LNS+FALKQLG LDYFLG++V
Sbjct: 2 DPSLFVYKQQQYTVFLLVYVDDITITGNCVLLIQQLISQLNSQFALKQLGLLDYFLGIEV 181
Query: 1293 HHLQDRSLLLTQTKY 1307
+L D+ + + K+
Sbjct: 182 KYLPDKGISCPRLKW 226
>BQ081067 weakly similar to GP|23495377|dbj orf490 {Oryza sativa (japonica
cultivar-group)}, partial (18%)
Length = 430
Score = 122 bits (307), Expect(2) = 4e-39
Identities = 58/98 (59%), Positives = 72/98 (73%)
Frame = +1
Query: 1048 LLPTLLLAQAEPVTTKHALKDPTWMAAMKSEYDALMSNNTWTLVTLPKGRHPIGCKWVFR 1107
L PTLL AEP T K AL P W AM++++DALM N T TL +LP G+ I CKWVFR
Sbjct: 1 LHPTLLFTTAEPSTVKQALISPPWRQAMQADFDALMENKTLTLTSLPSGKAAIDCKWVFR 180
Query: 1108 IKENADGSVNRYKARLVAKGYHQVKGFDYAETFSPVVK 1145
IKEN G++NRY++RLVAKG+H G DY+ETFSPV++
Sbjct: 181 IKENLYGTLNRYRSRLVAKGFHLKFGCDYSETFSPVIE 294
Score = 59.3 bits (142), Expect(2) = 4e-39
Identities = 26/44 (59%), Positives = 34/44 (77%)
Frame = +3
Query: 1147 ITIRLILTLAVSKRWHIHQLDVNNAFLHGALQEEVYMQQPAGFQ 1190
+TIRLIL +A++ W + Q+D+NNAFLHG L EEVYM Q GF+
Sbjct: 297 VTIRLILFIALTNHWPLQQVDINNAFLHGLLTEEVYMVQLPGFE 428
>BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vinifera},
partial (34%)
Length = 407
Score = 160 bits (404), Expect = 5e-39
Identities = 73/128 (57%), Positives = 94/128 (73%), Gaps = 1/128 (0%)
Frame = -2
Query: 1091 VTLPKGRHPIGCKWVFRIKENADGSVNRYKARLVAKGYHQVKGFDYAETFSPVVKPITIR 1150
V LP G+ P+GC+WV+ +K G V+R KARLVAKGY QV G DY +TFSPV K T+R
Sbjct: 406 VPLPPGKTPVGCRWVYTVKVGPTGEVDRLKARLVAKGYTQVYGIDYCDTFSPVAKLTTVR 227
Query: 1151 LILTLAVSKRWHIHQLDVNNAFLHGALQEEVYMQQPAGF-QNSDKTLVCKLNKALYGLKQ 1209
L L +A W +HQLD+ NAFLHG L+E++YM+QP GF + LVCKL+++LYGLKQ
Sbjct: 226 LFLAMAAICHWPLHQLDIKNAFLHGDLEEDIYMEQPPGFVAQGEYGLVCKLHRSLYGLKQ 47
Query: 1210 APRAWFDR 1217
+PRAWF +
Sbjct: 46 SPRAWFGK 23
>AI855899 similar to GP|2244960|emb| retrotransposon like protein {Arabidopsis
thaliana}, partial (18%)
Length = 418
Score = 159 bits (403), Expect = 7e-39
Identities = 76/136 (55%), Positives = 99/136 (71%)
Frame = +1
Query: 1316 DMAEAKGISTPMVSGARLSKHGADYFSDPTLYRSIVGALQYATLTRPEISFSVNKVCQFL 1375
+M + GISTPMVS +LSK G++ + YR IVGALQY TLTRP I+++VNKV +F+
Sbjct: 10 NMLDCNGISTPMVSSYKLSKFGSELLPNAHQYRDIVGALQYVTLTRPNIAYNVNKVSEFM 189
Query: 1376 SQPLEEHWKAVKRILRYLKGTIHHGLHIRPCSLHSPVSLVAYCDADWGSDPDDRRSTSGS 1435
S PL+ + VKRILRYL GT+ GL ++P + + +SL AY D DWGSDP + RSTSGS
Sbjct: 190 SSPLQSY*LTVKRILRYLSGTVTQGLLLQPAHMDAKISLRAYNDLDWGSDPAEMRSTSGS 369
Query: 1436 CVFFGPNLVTWTSKKQ 1451
C+F G NL+ W+SKKQ
Sbjct: 370 CIFSGSNLIAWSSKKQ 417
>TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragment), partial
(30%)
Length = 687
Score = 156 bits (395), Expect = 6e-38
Identities = 78/150 (52%), Positives = 102/150 (68%), Gaps = 1/150 (0%)
Frame = +2
Query: 1414 LVAYCDADWGSDPDDRRSTSGSCVFFGPNLVTWTSKKQTLVARSSTEAEYRSLANTSAEL 1473
L YCDADW P DRRSTSG CVF G NLV+W SKKQT+VARSS EAEYRS+A + EL
Sbjct: 17 LSGYCDADWAGCPMDRRSTSGYCVFIGGNLVSWKSKKQTVVARSSAEAEYRSMAMVTCEL 196
Query: 1474 LWIQSLLQELQVPFTVP-KVFCDNMGAVALTHNPVLHTRTKHMELDIFFVREKVQNQSLF 1532
+WI+ LQEL+ + K++CDN A+ + NPV H RTKH+E+D F+REK+ ++ +
Sbjct: 197 MWIKQFLQELRFCEELQMKLYCDNQAALHIASNPVFHERTKHIEIDCHFIREKLLSKEIV 376
Query: 1533 VHHVPSVDQIADIFTKALSPTRFEDLRSKL 1562
+ S DQ DI TK+L + + + SKL
Sbjct: 377 TEFIGSNDQPVDILTKSLRGPKIQIVCSKL 466
>CO984748
Length = 810
Score = 154 bits (388), Expect = 4e-37
Identities = 87/193 (45%), Positives = 117/193 (60%), Gaps = 2/193 (1%)
Frame = -2
Query: 453 RAPHAMLASAPSTLG--NWHPDSGATHHVTHDASAISDGMSVTGNDQVYMGNGQGLPIQS 510
+AP A LA+A T NW+ + GATHHVT + + + +GN+QV++GNGQGLPI
Sbjct: 620 QAPQAYLANANPTQQSQNWYINYGATHHVTASPQNLMNEVPTSGNEQVFLGNGQGLPIT- 444
Query: 511 IGSASFSSPIHTQTTLLLKNLLLVPNITKNLVSVSKFAQDNGVYFEFHPFHCTVNSQDTC 570
GS F+SP + L L NLL VP+ITKNLVSVS FA+DN V+FEFH HC V SQ
Sbjct: 443 -GSTVFNSPFASNVKLTLNNLLHVPHITKNLVSVS*FAKDN-VFFEFHSSHCVVKSQVDG 270
Query: 571 KTLLRGSLGSDGLYSFDGMHSSNFHKDLPQVPVSSAFSLSKPASPAVNTIVSTSNNVPSP 630
LLRG+L DGLY F + +S+F + + + S S N + +++ N +
Sbjct: 269 SILLRGALSQDGLYVFSNLLNSSFKFTVGKAAANVHMSSLSDLSSHCNNVSTSALNTSNY 90
Query: 631 TAYDLWHSRLGHP 643
+ LWH+RLGHP
Sbjct: 89 SLVSLWHNRLGHP 51
>AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza sativa
(japonica cultivar-group)}, partial (10%)
Length = 463
Score = 149 bits (375), Expect = 1e-35
Identities = 76/152 (50%), Positives = 103/152 (67%), Gaps = 1/152 (0%)
Frame = -3
Query: 1074 AMKSEYDALMSNNTWTLVTLPKGRHPIGCKWVFRIKENADGSVNRYKARLVAKGYHQVKG 1133
AM+ E + NN W LV P+ IG KWVFR K + G + R KARLVAKGY+Q +G
Sbjct: 458 AMQEELNQFERNNVWKLVEKPENYPVIGTKWVFRNKLDEHGIIIRNKARLVAKGYNQEEG 279
Query: 1134 FDYAETFSPVVKPITIRLILTLAVSKRWHIHQLDVNNAFLHGALQEEVYMQQPAGFQNSD 1193
DY ET++PV + IR++L + ++Q+DV +AFL+G +QEEVY++QP GF+ D
Sbjct: 278 IDYEETYAPVARLEVIRMLLAYVSIMNFKLYQMDVKSAFLNGLIQEEVYVEQPPGFEIPD 99
Query: 1194 K-TLVCKLNKALYGLKQAPRAWFDRLKAALVK 1224
K T V KL KALYGLKQAPRAW++R+ L++
Sbjct: 98 KPTHVYKLQKALYGLKQAPRAWYERISNFLLE 3
>TC234303 weakly similar to UP|Q8W153 (Q8W153) Polyprotein, partial (10%)
Length = 558
Score = 147 bits (372), Expect = 3e-35
Identities = 83/179 (46%), Positives = 111/179 (61%), Gaps = 2/179 (1%)
Frame = +1
Query: 1114 GSVNRYKARLVAKGYHQVKGFDYAETFSPVVKPITIRLILTLAVSKRWHIHQLDVNNAFL 1173
G+++++KARLVAK Y QV G DY TFSPV K + L+ ++AV W + LD NAFL
Sbjct: 28 GTIDQFKARLVAKSYTQVYGQDYTGTFSPVAKMAYVHLLWSMAVVCHWPLF*LDAKNAFL 207
Query: 1174 HGALQEEVYMQQPAGF--QNSDKTLVCKLNKALYGLKQAPRAWFDRLKAALVKYGFKASC 1231
HG L+EEVYM+QP GF Q +VC+L ++ YGLKQ+PRAW A + Y +
Sbjct: 208 HGYLEEEVYMEQPLGFVAQGESSNMVCQLCRSFYGLKQSPRAWPFLYCGAAIWYDSHEA- 384
Query: 1232 CDPSLFTFHNKSNVIYILVYVDDIIITGNFLPFIQEVVQKLNSEFALKQLGQLDYFLGV 1290
D S+F H+ IY++VYVDDI ITG+ I + L +F K LG+L YFLG+
Sbjct: 385 -DHSVFYCHSPQGCIYLIVYVDDIGITGSDQHGIT*LK*XLCCQFQTKDLGKLRYFLGI 558
>CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {Vitis
vinifera}, partial (34%)
Length = 409
Score = 147 bits (372), Expect = 3e-35
Identities = 67/128 (52%), Positives = 87/128 (67%)
Frame = +3
Query: 1059 PVTTKHALKDPTWMAAMKSEYDALMSNNTWTLVTLPKGRHPIGCKWVFRIKENADGSVNR 1118
P T + AL P W AM E AL +N TW LV LP G+ +GC+WV+ +K +G V+R
Sbjct: 21 PSTIREALDHPGWRQAMVDEMQALENNGTWELVPLPPGKTTVGCRWVYTVKVGPNGKVDR 200
Query: 1119 YKARLVAKGYHQVKGFDYAETFSPVVKPITIRLILTLAVSKRWHIHQLDVNNAFLHGALQ 1178
KARLVAKGY QV G +Y +TFSPV T+RL L +A + W +HQLD+ NAFLHG L+
Sbjct: 201 LKARLVAKGYTQVYGIEYCDTFSPVFFLTTVRLFLAMAAIRHWPLHQLDIKNAFLHGDLE 380
Query: 1179 EEVYMQQP 1186
E++YM+QP
Sbjct: 381 EDIYMEQP 404
>TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprotein, partial
(7%)
Length = 804
Score = 147 bits (371), Expect = 4e-35
Identities = 75/221 (33%), Positives = 132/221 (58%), Gaps = 1/221 (0%)
Frame = +1
Query: 1343 DPTLYRSIVGALQYATLTRPEISFSVNKVCQFLSQPLEEHWKAVKRILRYLKGTIHHGLH 1402
D T +R ++G+L+Y +RP I F+V+ + +F+ +P H +A KR+LR +KGTI G+
Sbjct: 10 DVTEFRRLIGSLRYLCNSRPNICFAVSLISRFMKRPRLSHMQAAKRVLRLIKGTIGSGVL 189
Query: 1403 IRPCSLHSPVSLVAYCDADWGSDPDDRRSTSGSCVFFGPNLVTWTSKKQTLVARSSTEAE 1462
+ L+ Y D+DW DP+ +ST G + V +SKKQ ++A S+ EAE
Sbjct: 190 FPFKAKSGKPDLLGYTDSDWKRDPEQEKSTGGYLFMYNDAPVA*SSKKQDVIALSTCEAE 369
Query: 1463 YRSLANTSAELLWIQSLLQELQVPFTVP-KVFCDNMGAVALTHNPVLHTRTKHMELDIFF 1521
Y + + + + +W+ +LL+EL++ P + DN A+ L +P LH R+KH+EL +
Sbjct: 370 YVAASLGACQAVWMMNLLEELKLRERKPVNLLIDNKSAINLAKHPTLHGRSKHIELRFHY 549
Query: 1522 VREKVQNQSLFVHHVPSVDQIADIFTKALSPTRFEDLRSKL 1562
+R++V ++ V + + +Q+AD+ TK + +RF+ + S+L
Sbjct: 550 IRDQVSKGNVTVEYCKAEEQLADLMTKPIQVSRFKQICSEL 672
>BQ273297
Length = 420
Score = 91.7 bits (226), Expect(2) = 9e-34
Identities = 45/78 (57%), Positives = 56/78 (71%)
Frame = +2
Query: 1460 EAEYRSLANTSAELLWIQSLLQELQVPFTVPKVFCDNMGAVALTHNPVLHTRTKHMELDI 1519
E E+RS+ A++ IQSLL ELQV + P + CDN V+L HN +LH+RTKHMELD+
Sbjct: 185 ETEHRSMTLIVAKVT*IQSLLSELQVAHSTPLILCDNTSTVSLAHNLILHSRTKHMELDL 364
Query: 1520 FFVREKVQNQSLFVHHVP 1537
FFVREKV N+ L V HVP
Sbjct: 365 FFVREKVLNKKLDVVHVP 418
Score = 72.4 bits (176), Expect(2) = 9e-34
Identities = 38/66 (57%), Positives = 44/66 (66%)
Frame = +1
Query: 1393 LKGTIHHGLHIRPCSLHSPVSLVAYCDADWGSDPDDRRSTSGSCVFFGPNLVTWTSKKQT 1452
LKGTI GLH + SL P+ L AYC +DW SDPD RRS F GPNL+ SKKQ+
Sbjct: 1 LKGTISWGLHFQATSLQHPIPLHAYCGSDWASDPDYRRS------FLGPNLIC*WSKKQS 162
Query: 1453 LVARSS 1458
+VARSS
Sbjct: 163 VVARSS 180
>BU548265 homologue to GP|18000935|gb| cytochrome b {Mabuya delalandii},
partial (5%)
Length = 667
Score = 139 bits (351), Expect = 7e-33
Identities = 84/220 (38%), Positives = 120/220 (54%), Gaps = 27/220 (12%)
Frame = -3
Query: 458 MLASAPSTLGNWHPDSGATHHVTHDASAISDGMSVTGNDQVYMGNGQGLPIQSIGSASFS 517
+ +SA + +W+PDSGA+HHVT+ + I Q+ +GNGQGL I S G ++FS
Sbjct: 650 LTSSAATPSQSWYPDSGASHHVTNMSQNIQQVAPFEEPIQIIIGNGQGLNINSSGLSTFS 471
Query: 518 SPIHTQTTLLLKNLLLVPNITKNLVSVSKFAQDNGVYFEFHPFHCTVNSQDTCKTLLRGS 577
SPI+ Q +L+L NLL VP ITKNL+ VS+F +DN VYFEFH + C S DT LL G
Sbjct: 470 SPINPQFSLVLSNLLFVPTITKNLIRVSQFCKDNNVYFEFHSYVCLFKS*DTKLVLLEGF 291
Query: 578 LGSDGLYSFDGMHSSNFHKDLPQVPVSSAFSLSKPASPAVNTIVSTS------------- 624
+GSDGLY + +S +P S ++ S +S + N +V TS
Sbjct: 290 VGSDGLYQSPQLFAS--------MPQSKSYLKSFRSSLSNNIVVKTSIVKTTNCSTKFLF 135
Query: 625 ---NNVP-----------SPTAYDLWHSRLGHPHYEALQS 650
NN + ++ +WHSRLGH +A+++
Sbjct: 134 VSANNTVVVDLVVNTTSCNSVSFPIWHSRLGHHSVDAMKT 15
>BM307983
Length = 406
Score = 130 bits (328), Expect = 3e-30
Identities = 67/133 (50%), Positives = 89/133 (66%), Gaps = 2/133 (1%)
Frame = +2
Query: 1100 IGCKWVFRIKENADGSVNRYKARLVAKGYHQVKGFDYAETFSPVVKPITIRLILTLAVSK 1159
+GC+W++ +K AD +++RYKARLVAKGY Q G DY ETF+ K I ++
Sbjct: 2 VGCRWIYTVKY*ADDTLDRYKARLVAKGYIQTYGIDYEETFAQWQK*IQSGSSSP*QQAQ 181
Query: 1160 -RWHIHQLDVNNAFLHGALQEEVYMQQPAGFQNSD-KTLVCKLNKALYGLKQAPRAWFDR 1217
W +HQ DV NAFLHG+L+EEVYM+ P G+ S+ VC+L KALYGLKQ+PRAWF R
Sbjct: 182 FGWEMHQFDVKNAFLHGSLEEEVYMEIPPGYGASNGGNKVCRLKKALYGLKQSPRAWFGR 361
Query: 1218 LKAALVKYGFKAS 1230
A++ G+K S
Sbjct: 362 FTQAMLSLGYKQS 400
>BF595216
Length = 421
Score = 77.8 bits (190), Expect(2) = 5e-30
Identities = 36/50 (72%), Positives = 45/50 (90%)
Frame = +1
Query: 1109 KENADGSVNRYKARLVAKGYHQVKGFDYAETFSPVVKPITIRLILTLAVS 1158
KEN+DG+VN+YKA+LVAKG+HQ G DY ETFS V+KPIT+RL+LTLAV+
Sbjct: 124 KENSDGTVNKYKAKLVAKGFHQQYGTDYIETFSLVIKPITMRLLLTLAVT 273
Score = 73.6 bits (179), Expect(2) = 5e-30
Identities = 33/45 (73%), Positives = 39/45 (86%)
Frame = +3
Query: 1161 WHIHQLDVNNAFLHGALQEEVYMQQPAGFQNSDKTLVCKLNKALY 1205
W I QLDVNNAFL+G LQEEVYMQQP GF ++ K+LVCKL+KA+Y
Sbjct: 285 WPIQQLDVNNAFLNGILQEEVYMQQPPGFDSTTKSLVCKLHKAIY 419
Score = 59.7 bits (143), Expect = 1e-08
Identities = 26/44 (59%), Positives = 34/44 (77%)
Frame = +2
Query: 696 FADLWGPASIESSAGYSYFLTCVDAFSRFTWIYLLKRKSETSTV 739
F+DL PA SS GYSY++T VDAF+R+TWI+LL+ KSE T+
Sbjct: 5 FSDLCSPAPFVSSTGYSYYVTFVDAFTRYTWIFLLRHKSEKKTL 136
>TC211311 weakly similar to UP|O24587 (O24587) Pol protein, partial (15%)
Length = 1213
Score = 97.1 bits (240), Expect(2) = 2e-28
Identities = 64/192 (33%), Positives = 93/192 (48%)
Frame = +3
Query: 1242 KSNVIYILVYVDDIIITGNFLPFIQEVVQKLNSEFALKQLGQLDYFLGVQVHHLQDRSLL 1301
K + I +YVDDII +E + + F G+L + LG+Q+ + +
Sbjct: 477 KETFLIIHIYVDDIIFGATSKRMCKEFFELMKDGFETSMKGELKFLLGLQIIQ-KVYGIF 653
Query: 1302 LTQTKYIGDLLERADMAEAKGISTPMVSGARLSKHGADYFSDPTLYRSIVGALQYATLTR 1361
+ Q KY L+R M EAK ++TPM + K + Y ++ +L Y T +R
Sbjct: 654 IHQEKYTKSHLKRFRMDEAKPMATPMHRSTIIDKDEKGNHTS*KEYSGMIDSLSYLTSSR 833
Query: 1362 PEISFSVNKVCQFLSQPLEEHWKAVKRILRYLKGTIHHGLHIRPCSLHSPVSLVAYCDAD 1421
P+I F V +F S P H AVKRILRYL GT +H L + S L+ YCD
Sbjct: 834 PDIVFVVCLCARFQSYPKISHVTAVKRILRYLVGTTNHCLWFKK---RSEFDLLGYCDVY 1004
Query: 1422 WGSDPDDRRSTS 1433
+ D +R+STS
Sbjct: 1005 FAGDKVERKSTS 1040
Score = 49.3 bits (116), Expect(2) = 2e-28
Identities = 26/54 (48%), Positives = 32/54 (59%)
Frame = +2
Query: 1194 KTLVCKLNKALYGLKQAPRAWFDRLKAALVKYGFKASCCDPSLFTFHNKSNVIY 1247
KTL C +YGLKQA RAW++RL + LV GF DP+LF K N+ Y
Sbjct: 347 KTLSC-----VYGLKQALRAWYERLSSFLVSNGFTRGITDPALFRKAQKGNLSY 493
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.318 0.133 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,816,884
Number of Sequences: 63676
Number of extensions: 1414190
Number of successful extensions: 24627
Number of sequences better than 10.0: 922
Number of HSP's better than 10.0 without gapping: 13325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19478
length of query: 1573
length of database: 12,639,632
effective HSP length: 110
effective length of query: 1463
effective length of database: 5,635,272
effective search space: 8244402936
effective search space used: 8244402936
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)
Lotus: description of TM0010.11