BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0009.6
(309 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC221399 similar to UP|Q6ICW5 (Q6ICW5) At5g54075, partial (82%) 63 2e-10
BF596857 60 1e-09
TC209559 similar to UP|Q6ICW5 (Q6ICW5) At5g54075, partial (56%) 55 3e-08
TC204312 weakly similar to UP|Q9LUC6 (Q9LUC6) Cytochrome P450 (A... 32 0.48
TC205805 similar to UP|UPP_TOBAC (P93394) Uracil phosphoribosylt... 31 0.81
TC220387 weakly similar to UP|Q7QJF6 (Q7QJF6) AgCP3850 (Fragment... 30 1.4
TC206433 30 1.8
TC205437 similar to UP|PRS6_SOLTU (P54778) 26S protease regulato... 29 2.4
CA785338 similar to GP|3850569|gb|A ESTs gb|T21276 gb|T45403 a... 28 4.0
TC221779 28 4.0
TC217978 weakly similar to UP|Q8VYJ8 (Q8VYJ8) AT4g27310/M4I22_12... 28 4.0
TC205434 homologue to UP|PRS6_ARATH (Q9SEI4) 26S protease regula... 28 5.3
CA853125 similar to GP|11762132|gb| AT3g62110 {Arabidopsis thali... 28 6.9
TC216311 UP|Q7XA52 (Q7XA52) Monosaccharide transporter, complete 28 6.9
TC206377 similar to UP|O81390 (O81390) Calcium-dependent protein... 28 6.9
TC216155 weakly similar to UP|Q8L5W2 (Q8L5W2) BZIP transcription... 28 6.9
TC211248 homologue to UP|Q9FGU7 (Q9FGU7) Arabidopsis thaliana ge... 28 6.9
TC215563 weakly similar to UP|Q8RX71 (Q8RX71) At3g51780/ORF3, pa... 28 6.9
TC207144 28 6.9
>TC221399 similar to UP|Q6ICW5 (Q6ICW5) At5g54075, partial (82%)
Length = 661
Score = 62.8 bits (151), Expect = 2e-10
Identities = 32/36 (88%), Positives = 33/36 (90%)
Frame = -3
Query: 154 NHALITRSVFINQTLVPVSLELKDTVVRAYRTDPVQ 189
NHALITRS FI+QT VPVSLELKDT VRAYRTDPVQ
Sbjct: 143 NHALITRS*FIHQT*VPVSLELKDTEVRAYRTDPVQ 36
>BF596857
Length = 365
Score = 60.1 bits (144), Expect = 1e-09
Identities = 31/37 (83%), Positives = 33/37 (88%)
Frame = +2
Query: 153 INHALITRSVFINQTLVPVSLELKDTVVRAYRTDPVQ 189
+N ALITRS FI+QT VPVSLELKDT VRAYRTDPVQ
Sbjct: 116 VNPALITRS*FIHQT*VPVSLELKDTEVRAYRTDPVQ 226
>TC209559 similar to UP|Q6ICW5 (Q6ICW5) At5g54075, partial (56%)
Length = 232
Score = 55.5 bits (132), Expect = 3e-08
Identities = 28/33 (84%), Positives = 30/33 (90%)
Frame = -1
Query: 153 INHALITRSVFINQTLVPVSLELKDTVVRAYRT 185
+NHALITRS FI+QT VPVSLELKDT VRAYRT
Sbjct: 106 VNHALITRS*FIHQT*VPVSLELKDTEVRAYRT 8
>TC204312 weakly similar to UP|Q9LUC6 (Q9LUC6) Cytochrome P450
(AT3g14680/MIE1_18), partial (53%)
Length = 1433
Score = 31.6 bits (70), Expect = 0.48
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
Frame = -1
Query: 64 LTAATLSSTAIPVAAAATLASSSLFRRHLPPGCQSSRSGTVLLRSRCRVDPYLVP---LK 120
+ T SST + ++ + S +R ++ G + LR CR+ + L
Sbjct: 926 IDTGTTSSTPAGIVSSPSFVSLRRYRANITTGGYN-------LRLSCRIIDTIFS*PILS 768
Query: 121 HTGFAFRRRSTTSAEPFCCKEGARVKNVNRTTINHA 156
+GF+F TS+ F C+ G + N N T N A
Sbjct: 767 *SGFSFPNTWKTSSLAFSCQSGCLLNNNNVQTSNSA 660
>TC205805 similar to UP|UPP_TOBAC (P93394) Uracil phosphoribosyltransferase
(UMP pyrophosphorylase) (UPRTase) , partial (26%)
Length = 1532
Score = 30.8 bits (68), Expect = 0.81
Identities = 18/43 (41%), Positives = 20/43 (45%)
Frame = +1
Query: 56 LLGHHHLPLTAATLSSTAIPVAAAATLASSSLFRRHLPPGCQS 98
L H + LT SST I ATL LFR+H P G S
Sbjct: 508 LFEHKKISLTCNLFSSTCISKINRATLDVQFLFRKHFPFGLPS 636
>TC220387 weakly similar to UP|Q7QJF6 (Q7QJF6) AgCP3850 (Fragment), partial
(17%)
Length = 556
Score = 30.0 bits (66), Expect = 1.4
Identities = 26/78 (33%), Positives = 33/78 (41%), Gaps = 3/78 (3%)
Frame = +3
Query: 37 FSSTLGGSFTQISGFVLVFLLGHHHL---PLTAATLSSTAIPVAAAATLASSSLFRRHLP 93
+S + GSF ++ V VFL H L PL L IP+A+ T+ S P
Sbjct: 156 YSFSCSGSFQSVTAIVFVFLFFHFFLK*WPLFDG-LCRRRIPIASTLTVRFQS------P 314
Query: 94 PGCQSSRSGTVLLRSRCR 111
P S R T RCR
Sbjct: 315 PRRTSFRPQTQSTPRRCR 368
>TC206433
Length = 1287
Score = 29.6 bits (65), Expect = 1.8
Identities = 17/57 (29%), Positives = 26/57 (44%), Gaps = 3/57 (5%)
Frame = +1
Query: 247 SLIPIQDCSIHGPPKQFPE-NFLLKQPI--KSTESEGMFREVCRLDAYYRLYKCHVW 300
S P+Q CS+ P +Q P N +++P+ TE G V + R + C W
Sbjct: 64 SQFPLQSCSLSLPRRQDPR*NGSVQEPLAGNCTEGRGAVAPVFYIQVRVRTFTCFYW 234
>TC205437 similar to UP|PRS6_SOLTU (P54778) 26S protease regulatory subunit
6B homolog, partial (19%)
Length = 408
Score = 29.3 bits (64), Expect = 2.4
Identities = 17/53 (32%), Positives = 26/53 (48%)
Frame = -3
Query: 66 AATLSSTAIPVAAAATLASSSLFRRHLPPGCQSSRSGTVLLRSRCRVDPYLVP 118
A T S++ P A SS+ H PPGC+ +R+ + + CR P+ P
Sbjct: 241 APTGSASPPPSRGGARA*DSSVRPSHTPPGCRRTRADALGI*GGCRDLPHRRP 83
>CA785338 similar to GP|3850569|gb|A ESTs gb|T21276 gb|T45403 and
gb|AA586113 come from this gene. {Arabidopsis thaliana},
partial (10%)
Length = 435
Score = 28.5 bits (62), Expect = 4.0
Identities = 25/85 (29%), Positives = 40/85 (46%)
Frame = -1
Query: 2 VKSTPRIDQRMKKIHNSKDKSNPTILGRFLPTSGGFSSTLGGSFTQISGFVLVFLLGHHH 61
+ S+P I+ ++ S +P + P+ FSS L + +S +L F
Sbjct: 237 MSSSPGIEGWLETTEISLSLHDPLLSLSIFPSDASFSSYLASN---LSPLILTF---SGT 76
Query: 62 LPLTAATLSSTAIPVAAAATLASSS 86
L T + LSST++ + AAT SSS
Sbjct: 75 LDATFSDLSSTSVLDSEAATPVSSS 1
>TC221779
Length = 475
Score = 28.5 bits (62), Expect = 4.0
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
Frame = +3
Query: 24 PTILGRFLPTSGGFSSTLGGSFTQISGFVLVFLLGHH-----HLPLTAATLSSTAIPVAA 78
PTIL + PTS G + + + +S FV + H H+ L A+L + + A
Sbjct: 105 PTILLKMPPTSFGMALLMVSGISLLSSFVGFYSQLTHFCFLTHISLLLASLIGQVLTILA 284
Query: 79 AATLASSSLFRRHLPPGCQSSRSGTVLLRSRC 110
T +S+ P + + VL+R C
Sbjct: 285 LFTKEKASMSLLKSP---RDPKEAKVLVRLEC 371
>TC217978 weakly similar to UP|Q8VYJ8 (Q8VYJ8) AT4g27310/M4I22_120, partial
(42%)
Length = 1064
Score = 28.5 bits (62), Expect = 4.0
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -2
Query: 79 AATLASSSLFRRHLPPGCQSSRSGTVLLRSRCRVDPY-LVPLKHTGFAFRRR 129
++T A+++ +R PGC+ R L+R CR+ +P + +G RRR
Sbjct: 589 SSTAAAAAAWRTTARPGCRHRRRPRCLVRRHCRLRSLPSLPRRRSGRRRRRR 434
>TC205434 homologue to UP|PRS6_ARATH (Q9SEI4) 26S protease regulatory subunit
6B homolog (26S proteasome AAA-ATPase subunit RPT3)
(Regulatory particle triple-A ATPase subunit 3), partial
(96%)
Length = 1573
Score = 28.1 bits (61), Expect = 5.3
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -1
Query: 66 AATLSSTAIPVAAAATLASSSLFRRHLPPGCQSSRSGTVLLRSRCRVDP 114
A T+S++ P AA SS PPGC+ + +G + CR P
Sbjct: 340 APTVSASPPPALGAARA*DSSAHPSRTPPGCR*TPAGAGGISGGCRGRP 194
>CA853125 similar to GP|11762132|gb| AT3g62110 {Arabidopsis thaliana},
partial (17%)
Length = 546
Score = 27.7 bits (60), Expect = 6.9
Identities = 18/53 (33%), Positives = 24/53 (44%)
Frame = -2
Query: 223 CLCVQCKSFEVIKLELLILKCYTHSLIPIQDCSIHGPPKQFPENFLLKQPIKS 275
C CK +V E ILKC+ PI +C+ G NFL++ KS
Sbjct: 398 CSTFVCKGIQV---EDGILKCFCVESDPIANCTKFGDADTVRSNFLVRLLAKS 249
>TC216311 UP|Q7XA52 (Q7XA52) Monosaccharide transporter, complete
Length = 1925
Score = 27.7 bits (60), Expect = 6.9
Identities = 14/39 (35%), Positives = 21/39 (52%)
Frame = -2
Query: 94 PGCQSSRSGTVLLRSRCRVDPYLVPLKHTGFAFRRRSTT 132
P C++S SGT ++ DP++ P H F +R R T
Sbjct: 307 PFCRNSSSGTPTGKT*AETDPWMSP--HLKFRYRNRRLT 197
>TC206377 similar to UP|O81390 (O81390) Calcium-dependent protein kinase ,
partial (74%)
Length = 1644
Score = 27.7 bits (60), Expect = 6.9
Identities = 29/93 (31%), Positives = 38/93 (40%), Gaps = 6/93 (6%)
Frame = +1
Query: 21 KSNPTILGRFLPTSGGFSSTLGGSFTQISGFVLV----FLLGHHHLPLTAATLS--STAI 74
+ NPT+ PT GF STL + +V + LPL+AA LS ST
Sbjct: 64 RGNPTLSSLRAPTRTGFPSTLSWNSAPAGSSSIVSSPRVITPREPLPLSAAPLSMLSTFA 243
Query: 75 PVAAAATLASSSLFRRHLPPGCQSSRSGTVLLR 107
+ T SS L C +R+ T L R
Sbjct: 244 TSWVSCTAISS------LKISCSLARTTTPLSR 324
>TC216155 weakly similar to UP|Q8L5W2 (Q8L5W2) BZIP transcription factor
ATB2, partial (66%)
Length = 1264
Score = 27.7 bits (60), Expect = 6.9
Identities = 13/30 (43%), Positives = 18/30 (59%)
Frame = -1
Query: 57 LGHHHLPLTAATLSSTAIPVAAAATLASSS 86
+GH LP A +LSS +P+ T +SSS
Sbjct: 766 IGHSDLPGAAVSLSSIYVPIPYWTTFSSSS 677
>TC211248 homologue to UP|Q9FGU7 (Q9FGU7) Arabidopsis thaliana genomic DNA,
chromosome 5, TAC clone:K18B18, partial (7%)
Length = 915
Score = 27.7 bits (60), Expect = 6.9
Identities = 21/53 (39%), Positives = 25/53 (46%)
Frame = -1
Query: 59 HHHLPLTAATLSSTAIPVAAAATLASSSLFRRHLPPGCQSSRSGTVLLRSRCR 111
H LPL AA L+S AA SSSL + H PP + G +L S R
Sbjct: 384 HS*LPLLAACLTS------AAREEHSSSLTKHHSPPSKAPKKRGWLLRSSILR 244
>TC215563 weakly similar to UP|Q8RX71 (Q8RX71) At3g51780/ORF3, partial (18%)
Length = 495
Score = 27.7 bits (60), Expect = 6.9
Identities = 17/68 (25%), Positives = 33/68 (48%)
Frame = -1
Query: 69 LSSTAIPVAAAATLASSSLFRRHLPPGCQSSRSGTVLLRSRCRVDPYLVPLKHTGFAFRR 128
++S A+ + ++SS L +P +S R +CR+ P+ +PLK +
Sbjct: 444 IASKALDITFCFLVSSSFLSLLAVPSKSKSFDLSFTPSRCKCRLSPFSIPLK------KS 283
Query: 129 RSTTSAEP 136
R +T ++P
Sbjct: 282 RCSTGSKP 259
>TC207144
Length = 1174
Score = 27.7 bits (60), Expect = 6.9
Identities = 26/97 (26%), Positives = 41/97 (41%)
Frame = -3
Query: 56 LLGHHHLPLTAATLSSTAIPVAAAATLASSSLFRRHLPPGCQSSRSGTVLLRSRCRVDPY 115
++ + H + +LSS P + + + S S F + PGC G++ S VDP
Sbjct: 491 IISNKHSGNASLSLSSRFDPFSRS--IDSGSEFGSRVGPGC*GCSFGSITFSSSSSVDPS 318
Query: 116 LVPLKHTGFAFRRRSTTSAEPFCCKEGARVKNVNRTT 152
V TG + SA F E A+V V ++
Sbjct: 317 EVSTV-TGSV-----SASAPSFSFSEAAKVSGVEESS 225
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.323 0.137 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,226,800
Number of Sequences: 63676
Number of extensions: 265043
Number of successful extensions: 1544
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 1532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1544
length of query: 309
length of database: 12,639,632
effective HSP length: 97
effective length of query: 212
effective length of database: 6,463,060
effective search space: 1370168720
effective search space used: 1370168720
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)
Lotus: description of TM0009.6