BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0009.4
(89 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC228623 similar to UP|Q9SA21 (Q9SA21) F3O9.2 protein, partial (... 41 9e-05
TC231411 similar to GB|AAP21370.1|30102904|BT006562 At3g27200 {A... 41 1e-04
TC230133 weakly similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%) 40 2e-04
TC203361 similar to UP|Q6VBJ4 (Q6VBJ4) Epa5p, partial (7%) 40 3e-04
TC232838 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {A... 39 6e-04
TC232681 weakly similar to GB|AAP21377.1|30102918|BT006569 At1g4... 37 0.002
TC230134 weakly similar to UP|NUCL_HUMAN (P19338) Nucleolin (Pro... 37 0.002
TC211437 similar to UP|Q6VBJ4 (Q6VBJ4) Epa5p, partial (7%) 37 0.002
TC205446 weakly similar to UP|Q8LCN5 (Q8LCN5) Arabinogalactan-pr... 36 0.003
TC219641 similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%) 36 0.004
TC214405 homologue to UP|EFT1_SOYBN (Q43467) Elongation factor T... 36 0.004
BE822052 similar to GP|4557063|gb|A expressed protein {Arabidops... 35 0.006
TC229899 similar to UP|Q9LIC8 (Q9LIC8) Emb|CAA64867.1, partial (... 34 0.011
TC215451 weakly similar to UP|Q94K07 (Q94K07) Nucleosome assembl... 34 0.011
TC215452 similar to UP|P93488 (P93488) NAP1Ps, partial (29%) 34 0.011
TC228693 similar to UP|Q8S9A6 (Q8S9A6) Glucosyltransferase-3, pa... 34 0.014
TC203442 weakly similar to UP|Q6PLP6 (Q6PLP6) Cell wall protein ... 34 0.014
BG363504 similar to PIR|T07622|T076 extensin homolog - soybean (... 34 0.014
TC210126 similar to UP|NUCL_HUMAN (P19338) Nucleolin (Protein C2... 33 0.019
TC210655 33 0.019
>TC228623 similar to UP|Q9SA21 (Q9SA21) F3O9.2 protein, partial (85%)
Length = 1082
Score = 41.2 bits (95), Expect = 9e-05
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Frame = +2
Query: 12 EEGGRGDSGGGGPLWYILVMAMTTTSEVVEAVVVVLEGEGDDGGSVSDDSDEDNDSG--- 68
EEGGRG GGG + +E A V GEG G V ++ ++ D+G
Sbjct: 260 EEGGRGRKEGGG-----------SRAESGGATVGGAGGEG--AGEVDEEGGQEGDTGVDP 400
Query: 69 DSEGDNGGDNDNDGGDSDGG 88
+EGD GG + +GG + GG
Sbjct: 401 GAEGDGGGAEEAEGGGAGGG 460
>TC231411 similar to GB|AAP21370.1|30102904|BT006562 At3g27200 {Arabidopsis
thaliana;} , partial (57%)
Length = 855
Score = 40.8 bits (94), Expect = 1e-04
Identities = 23/46 (50%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Frame = -1
Query: 38 EVVEAVVVVLEGEGDDGGSVSDDSDEDNDS-GDSEGDNGGDNDNDG 82
E +A+V V GE DDGG +D D + DS GDS+GD GDN +G
Sbjct: 564 EAEDALVFV--GEEDDGGDDNDVDDNNGDSDGDSDGDVAGDNAGEG 433
>TC230133 weakly similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%)
Length = 850
Score = 40.0 bits (92), Expect = 2e-04
Identities = 19/40 (47%), Positives = 24/40 (59%), Gaps = 2/40 (5%)
Frame = +3
Query: 51 GDDGGSV--SDDSDEDNDSGDSEGDNGGDNDNDGGDSDGG 88
GDDGG SDD E N G S+ D+G D+++D D D G
Sbjct: 360 GDDGGEEADSDDDPEANGGGGSDDDDGDDDEDDDNDEDDG 479
Score = 37.0 bits (84), Expect = 0.002
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 7/46 (15%)
Frame = +3
Query: 48 EGEGDD-------GGSVSDDSDEDNDSGDSEGDNGGDNDNDGGDSD 86
E + DD GGS DD D+D D D++ D+G ++D D GD D
Sbjct: 378 EADSDDDPEANGGGGSDDDDGDDDEDD-DNDEDDGDEDDEDEGDDD 512
Score = 33.1 bits (74), Expect = 0.024
Identities = 14/39 (35%), Positives = 21/39 (52%)
Frame = +3
Query: 50 EGDDGGSVSDDSDEDNDSGDSEGDNGGDNDNDGGDSDGG 88
E + S ++D D+D++ D E DN + D D DGG
Sbjct: 258 EENKDASDTEDDDDDDNVNDGEDDNDDEEDEDFSGDDGG 374
Score = 30.8 bits (68), Expect = 0.12
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 5/44 (11%)
Frame = +3
Query: 50 EGDDGGSVSDDSDEDNDSGDSE--GDNGG---DNDNDGGDSDGG 88
+ DD +V+D D+++D D + GD+GG D+D+D + GG
Sbjct: 288 DDDDDDNVNDGEDDNDDEEDEDFSGDDGGEEADSDDDPEANGGG 419
Score = 30.4 bits (67), Expect = 0.16
Identities = 15/46 (32%), Positives = 24/46 (51%), Gaps = 11/46 (23%)
Frame = +3
Query: 52 DDGGSVSDDSDEDNDSGDS-----------EGDNGGDNDNDGGDSD 86
+DG +DD ++++ SGD E + GG +D+D GD D
Sbjct: 312 NDGEDDNDDEEDEDFSGDDGGEEADSDDDPEANGGGGSDDDDGDDD 449
Score = 30.0 bits (66), Expect = 0.21
Identities = 14/36 (38%), Positives = 18/36 (49%), Gaps = 4/36 (11%)
Frame = +3
Query: 49 GEGDDGGSVSDDSDEDNDSGDS----EGDNGGDNDN 80
G DD G +D D D D GD EGD+ D ++
Sbjct: 420 GSDDDDGDDDEDDDNDEDDGDEDDEDEGDDDEDEES 527
>TC203361 similar to UP|Q6VBJ4 (Q6VBJ4) Epa5p, partial (7%)
Length = 1090
Score = 39.7 bits (91), Expect = 3e-04
Identities = 15/39 (38%), Positives = 22/39 (55%)
Frame = -1
Query: 48 EGEGDDGGSVSDDSDEDNDSGDSEGDNGGDNDNDGGDSD 86
E E +DG DD D+D+D D E + G + D DG + +
Sbjct: 415 EDEDEDGDDQDDDEDDDDDDDDEEDEGGEEEDEDGAEDE 299
Score = 37.0 bits (84), Expect = 0.002
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -1
Query: 48 EGEGDDGGSVSDDSDEDNDSGDSEGDNGGDNDNDGGDSD 86
E + D+ G DD ++D+D D E D GG+ +++ G D
Sbjct: 418 EEDEDEDGDDQDDDEDDDDDDDDEEDEGGEEEDEDGAED 302
Score = 33.9 bits (76), Expect = 0.014
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -1
Query: 50 EGDDGGSVSD-DSDEDNDSGDSEGDNGGDNDNDGGDSDGG 88
EG GG+ + + DED D D + D D+D+D + +GG
Sbjct: 451 EGGAGGAEENGEEDEDEDGDDQDDDEDDDDDDDDEEDEGG 332
Score = 33.1 bits (74), Expect = 0.024
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 48 EGEGDDGGSVSDDSDEDNDSGDSEGDNGGDNDNDGG 83
+ EG+DG D D+D D G EG+ +++ GG
Sbjct: 604 DAEGEDGNDDEGDDDDDGDGGFGEGEEELSSEDGGG 497
>TC232838 similar to GB|AAP21377.1|30102918|BT006569 At1g47970 {Arabidopsis
thaliana;} , partial (46%)
Length = 902
Score = 38.5 bits (88), Expect = 6e-04
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +2
Query: 38 EVVEAVVVVLEGEGDDGGSVSDDSDEDNDSGDSEGDNGGDNDNDGGDSDGG 88
E V+ VV E + D+ DD +DND + + +GGD+D+D D + G
Sbjct: 302 ESVDEVVDDAEDDEDEEEDDDDDEGDDNDDEEDDAPDGGDDDDDEDDEEEG 454
Score = 35.4 bits (80), Expect = 0.005
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 7/46 (15%)
Frame = +2
Query: 48 EGEGDDGGSVSDDS-----DEDNDSGDSEGD--NGGDNDNDGGDSD 86
+ EGDD DD+ D+D++ + EGD GG+ D+D DSD
Sbjct: 365 DDEGDDNDDEEDDAPDGGDDDDDEDDEEEGDVQRGGEPDDDDNDSD 502
Score = 34.7 bits (78), Expect = 0.008
Identities = 29/77 (37%), Positives = 37/77 (47%), Gaps = 15/77 (19%)
Frame = +2
Query: 25 LWYILVMAMTTTSEVVEAV----VVVLEGEGDDG----GSVSDDSDEDND-SGDSEGDNG 75
LW+ L M T E+ E V V VL E D+ V DD+++D D D + D G
Sbjct: 200 LWF-LDSKMKATKELSEQVEENEVKVLVEEDDEEYESVDEVVDDAEDDEDEEEDDDDDEG 376
Query: 76 GDNDN------DGGDSD 86
DND+ DGGD D
Sbjct: 377 DDNDDEEDDAPDGGDDD 427
Score = 32.3 bits (72), Expect = 0.042
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 48 EGEGDDGGSVSDD-SDEDNDSGDSEGDNGGDNDNDGGDSDGG 88
EG+ GG DD +D D+DS D E ++ D + G + D G
Sbjct: 449 EGDVQRGGEPDDDDNDSDDDSDDDEDEDEEDEEEQGEEEDLG 574
>TC232681 weakly similar to GB|AAP21377.1|30102918|BT006569 At1g47970
{Arabidopsis thaliana;} , partial (39%)
Length = 867
Score = 37.0 bits (84), Expect = 0.002
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +1
Query: 48 EGEGDDGGSVSDDSDEDNDSGDSEGDNGGDNDNDGGDSD 86
E + DGG DD DE+ +S G D+DND D D
Sbjct: 250 EDDAPDGGDDDDDEDEEEESDVQRGGEPDDDDNDDDDED 366
Score = 28.5 bits (62), Expect = 0.60
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +1
Query: 56 SVSDDSDEDNDSGDSEGD--NGGDNDNDGGDSD 86
S DD D +++ D E D +GGD+D+D + +
Sbjct: 205 SFDDDDDNEDEEDDDEDDAPDGGDDDDDEDEEE 303
Score = 26.9 bits (58), Expect = 1.7
Identities = 13/42 (30%), Positives = 18/42 (41%), Gaps = 7/42 (16%)
Frame = +1
Query: 52 DDGGSVSDDSDEDNDSGDSEGDNGGDNDND-------GGDSD 86
DD D+ D+D D GD+ D D + GG+ D
Sbjct: 211 DDDDDNEDEEDDDEDDAPDGGDDDDDEDEEEESDVQRGGEPD 336
Score = 25.8 bits (55), Expect = 3.9
Identities = 17/57 (29%), Positives = 30/57 (51%)
Frame = +2
Query: 25 LWYILVMAMTTTSEVVEAVVVVLEGEGDDGGSVSDDSDEDNDSGDSEGDNGGDNDND 81
LW+ L + M T E+ + V E + V ++ DE+ +S D D+G D+++D
Sbjct: 44 LWF-LDLKMKATKELSQHVE-----ENEVTVLVDEEEDEEYESEDEVVDDGEDDEDD 196
>TC230134 weakly similar to UP|NUCL_HUMAN (P19338) Nucleolin (Protein C23),
partial (8%)
Length = 581
Score = 36.6 bits (83), Expect = 0.002
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 7/46 (15%)
Frame = +2
Query: 48 EGEGDD-----GGSVSDDSDEDNDSGDSEG--DNGGDNDNDGGDSD 86
E + DD GG SDD DED+D D + D+G ++D+D D D
Sbjct: 377 EADSDDDPEANGGGESDDDDEDDDDDDDDNDEDDGDEDDDDEEDED 514
Score = 36.2 bits (82), Expect = 0.003
Identities = 17/44 (38%), Positives = 22/44 (49%), Gaps = 8/44 (18%)
Frame = +2
Query: 51 GDDGGSVSDDSD--------EDNDSGDSEGDNGGDNDNDGGDSD 86
GDDGG +D D E +D + + D+ DND D GD D
Sbjct: 359 GDDGGEEADSDDDPEANGGGESDDDDEDDDDDDDDNDEDDGDED 490
Score = 33.5 bits (75), Expect = 0.019
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Frame = +2
Query: 35 TTSEVVEAVVVVLEGEGDDGGSVSDDSDEDNDSGDSEGDNGG---DNDND-----GGDSD 86
T+ E +A + + DD D D+D D D GD+GG D+D+D GG+SD
Sbjct: 248 TSEENKDASDTEDDDDDDDVNDGEDGDDDDEDDEDFSGDDGGEEADSDDDPEANGGGESD 427
Score = 33.5 bits (75), Expect = 0.019
Identities = 13/39 (33%), Positives = 20/39 (50%)
Frame = +2
Query: 50 EGDDGGSVSDDSDEDNDSGDSEGDNGGDNDNDGGDSDGG 88
E D DD D+D+ + +GD+ ++D D DGG
Sbjct: 257 ENKDASDTEDDDDDDDVNDGEDGDDDDEDDEDFSGDDGG 373
Score = 32.0 bits (71), Expect = 0.054
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 52 DDGGSVSDDSDEDNDSGDSEGDNGGDNDNDGGDSDG 87
++ SD D+D+D ++G++G D+D D D G
Sbjct: 254 EENKDASDTEDDDDDDDVNDGEDGDDDDEDDEDFSG 361
Score = 26.6 bits (57), Expect = 2.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 48 EGEGDDGGSVSDDSDEDNDSGDSEGDNGGDNDND 81
+ + +D DD+DED+ GD + D+ D D D
Sbjct: 425 DDDDEDDDDDDDDNDEDD--GDEDDDDEEDEDED 520
>TC211437 similar to UP|Q6VBJ4 (Q6VBJ4) Epa5p, partial (7%)
Length = 857
Score = 36.6 bits (83), Expect = 0.002
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = +1
Query: 50 EGDDGGSVSDDSD-EDNDSGDSEGDNGGDNDNDGGDSDG 87
EGD+GG D+++ E +D GD E D+G DN ++ D DG
Sbjct: 454 EGDEGGDPEDEANGEGSDDGD-EDDDGDDNGDEEDDDDG 567
Score = 32.0 bits (71), Expect = 0.054
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Frame = +1
Query: 48 EGEGDDGGSVSDDSDEDNDSGD---SEGDNGGDNDND--GGDSDGG 88
E +GD+ D DED D + EGD GGD +++ G SD G
Sbjct: 376 EEDGDEDDEDGPDEDEDGDDEEFSGEEGDEGGDPEDEANGEGSDDG 513
Score = 31.2 bits (69), Expect = 0.093
Identities = 12/39 (30%), Positives = 20/39 (50%)
Frame = +1
Query: 50 EGDDGGSVSDDSDEDNDSGDSEGDNGGDNDNDGGDSDGG 88
E +DG +E ++ GD E + G+ +DG + D G
Sbjct: 415 EDEDGDDEEFSGEEGDEGGDPEDEANGEGSDDGDEDDDG 531
Score = 24.6 bits (52), Expect = 8.7
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Frame = +1
Query: 49 GEGDDGGSVSDDSD----E-DNDSGDSEGDNGGDNDND 81
GEG D G DD D E D+D G+ E ++ +++ +
Sbjct: 493 GEGSDDGDEDDDGDDNGDEEDDDDGEDEEEDEEEDEEE 606
>TC205446 weakly similar to UP|Q8LCN5 (Q8LCN5) Arabinogalactan-protein,
partial (39%)
Length = 668
Score = 36.2 bits (82), Expect = 0.003
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 10/73 (13%)
Frame = -1
Query: 27 YILVMAMTTTSEVVEAVVVVLE--------GEGDDGGSVSDDSDEDNDSGDSEGDNGGD- 77
YI A TT+ A V + + G D G +++ E +G+SEGDNGGD
Sbjct: 470 YISKAAAKTTTAADPATVNLFKAAPF*EGAGASDGGEEIAEGVTEGTPAGESEGDNGGDG 291
Query: 78 -NDNDGGDSDGGW 89
+ G+ DG +
Sbjct: 290 GESTEVGEGDGAF 252
Score = 26.6 bits (57), Expect = 2.3
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -1
Query: 48 EGEGDDGGSVSDDSDEDNDSGDSEGDNGGDNDNDGGDSD 86
E EGD+GG + ++ G GG++D D + +
Sbjct: 320 ESEGDNGGDGGESTEVGEGDGAFTVGAGGEDDGDTAEGE 204
>TC219641 similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%)
Length = 942
Score = 35.8 bits (81), Expect = 0.004
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Frame = +1
Query: 48 EGEGDDGGSVSDDSDEDND---SGDSEGDNGGDNDNDGGDSD 86
EG+ D G +++D ++D +G D+ GD+D+DGGD D
Sbjct: 445 EGDEDFSGEGEEEADPEDDPEANGAGGSDSDGDDDDDGGDDD 570
Score = 34.7 bits (78), Expect = 0.008
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = +1
Query: 50 EGDDGGSVSDDSDEDNDSGDSEGDNGGDND----NDGGDSD 86
E + G D D+D+D GD + D+ GD+D +G D D
Sbjct: 505 EANGAGGSDSDGDDDDDGGDDDDDDNGDDDGEDEEEGEDED 627
Score = 34.3 bits (77), Expect = 0.011
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 5/44 (11%)
Frame = +1
Query: 49 GEGDDGGSVSDDSDEDNDSG-DSEGDN---GG-DNDNDGGDSDG 87
GEG++ DD + + G DS+GD+ GG D+D+D GD DG
Sbjct: 466 GEGEEEADPEDDPEANGAGGSDSDGDDDDDGGDDDDDDNGDDDG 597
Score = 33.9 bits (76), Expect = 0.014
Identities = 12/39 (30%), Positives = 22/39 (55%)
Frame = +1
Query: 48 EGEGDDGGSVSDDSDEDNDSGDSEGDNGGDNDNDGGDSD 86
+ +GDD DD D+DN D E + G+++++ + D
Sbjct: 529 DSDGDDDDDGGDDDDDDNGDDDGEDEEEGEDEDEEDEED 645
>TC214405 homologue to UP|EFT1_SOYBN (Q43467) Elongation factor Tu,
chloroplast precursor (EF-Tu), complete
Length = 2050
Score = 35.8 bits (81), Expect = 0.004
Identities = 26/87 (29%), Positives = 38/87 (42%), Gaps = 1/87 (1%)
Frame = -3
Query: 3 IMVVTLAAVEEGGRGDSGGGGPLWYILVMAMTTTSEVVEAVVVVLEGEGDDG-GSVSDDS 61
++V+ AV EGG+G GGG +V V + + L G DG GS +
Sbjct: 380 LVVLLRGAVAEGGKGHGEGGGQGGLAVVHVADGADVHVGLLALELAAGGADGEGSARE-- 207
Query: 62 DEDNDSGDSEGDNGGDNDNDGGDSDGG 88
G G+ GG ++ GG +GG
Sbjct: 206 ------GGGSGEGGGAAEDGGGVEEGG 144
>BE822052 similar to GP|4557063|gb|A expressed protein {Arabidopsis
thaliana}, partial (28%)
Length = 668
Score = 35.0 bits (79), Expect = 0.006
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -1
Query: 48 EGEGDDGGSVSDDSDEDNDSGDSEGDNGGDNDNDGGDSD 86
E G G + DDSDED+D + D+G D D G+ +
Sbjct: 401 EANGAGGSNDDDDSDEDDDDDNDGDDDGEDEDEKEGEDE 285
Score = 32.7 bits (73), Expect = 0.032
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 7/45 (15%)
Frame = -1
Query: 49 GEGDDGGSVSDDSD-------EDNDSGDSEGDNGGDNDNDGGDSD 86
GEG++ DD + D+D D + D+ D D+DG D D
Sbjct: 440 GEGEEEADPEDDPEANGAGGSNDDDDSDEDDDDDNDGDDDGEDED 306
Score = 27.7 bits (60), Expect = 1.0
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -1
Query: 50 EGDDGGSVSDDSDEDNDSGDSEGDNGGDNDNDGGDSD 86
EGD+ S + + D + GG ND+D D D
Sbjct: 461 EGDEDFSGEGEEEADPEDDPEANGAGGSNDDDDSDED 351
Score = 25.4 bits (54), Expect = 5.1
Identities = 12/36 (33%), Positives = 18/36 (49%), Gaps = 3/36 (8%)
Frame = -1
Query: 49 GEGDDGGSVSDDSDE---DNDSGDSEGDNGGDNDND 81
G DD S DD D+ D+D D + G D +++
Sbjct: 383 GSNDDDDSDEDDDDDNDGDDDGEDEDEKEGEDEEDE 276
Score = 24.6 bits (52), Expect = 8.7
Identities = 10/39 (25%), Positives = 19/39 (48%)
Frame = -1
Query: 48 EGEGDDGGSVSDDSDEDNDSGDSEGDNGGDNDNDGGDSD 86
EG+ D G +++D ++D + D+D+ D D
Sbjct: 461 EGDEDFSGEGEEEADPEDDPEANGAGGSNDDDDSDEDDD 345
>TC229899 similar to UP|Q9LIC8 (Q9LIC8) Emb|CAA64867.1, partial (26%)
Length = 736
Score = 34.3 bits (77), Expect = 0.011
Identities = 20/40 (50%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = +1
Query: 41 EAVVVVLE---GEGDDGGSVSDDSDEDNDSGDSEGDNGGD 77
EA VV+ + GE D GS SDD D D D GDN GD
Sbjct: 532 EAYVVIDKRSTGEPDLQGSSSDDGDSDPDEPSDSGDNQGD 651
>TC215451 weakly similar to UP|Q94K07 (Q94K07) Nucleosome assembly protein,
partial (20%)
Length = 777
Score = 34.3 bits (77), Expect = 0.011
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 50 EGDDGGSVSDDSDEDNDSGDSEGDNGGDNDNDGGDSD 86
+GD+ G + DD D+++ D + D D+D+D D D
Sbjct: 65 QGDEFGDLEDDEDDEDIEEDDDEDEEDDDDDDDDDDD 175
>TC215452 similar to UP|P93488 (P93488) NAP1Ps, partial (29%)
Length = 609
Score = 34.3 bits (77), Expect = 0.011
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 50 EGDDGGSVSDDSDEDNDSGDSEGDNGGDNDNDGGDSD 86
+GD+ G + DD D+++ D + D D+D+D D D
Sbjct: 114 QGDEFGDLEDDEDDEDIEEDDDEDEEDDDDDDDDDDD 224
>TC228693 similar to UP|Q8S9A6 (Q8S9A6) Glucosyltransferase-3, partial (59%)
Length = 907
Score = 33.9 bits (76), Expect = 0.014
Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = -3
Query: 37 SEVVEAVVVVLEGEG---DDGGSVSDDSDEDNDSGDSEGDNGGDNDNDGGDSDGG 88
+EVV LEGEG ++GG D D GD+ +GG DGGD GG
Sbjct: 386 TEVVAGGAAELEGEGHGRENGG--------DGDLGDAVEGDGGGGGGDGGDVFGG 246
>TC203442 weakly similar to UP|Q6PLP6 (Q6PLP6) Cell wall protein GP2
(Fragment), partial (6%)
Length = 980
Score = 33.9 bits (76), Expect = 0.014
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -1
Query: 50 EGDDGGSVSDDSDEDNDSGDSEGDNGGDNDNDGGDSDG 87
+GD+ G V + D D GD GD GG ++ GG++ G
Sbjct: 653 DGDERGGVIGNDDNGGDCGDEGGDGGG-GEDGGGEAGG 543
Score = 30.4 bits (67), Expect = 0.16
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = -1
Query: 50 EGDDGGSVSDDSDEDNDSGDSEGDNGGDNDNDGGDSDGG 88
+ + GG+ S D DE ++ DNGGD ++GGD GG
Sbjct: 683 DAECGGNNSLDGDERGGVIGND-DNGGDCGDEGGDGGGG 570
Score = 26.6 bits (57), Expect = 2.3
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = -1
Query: 40 VEAVVVVLEGEGDDGGSVSDDSDEDNDSGDSEGDNGGDNDNDGG 83
V V ++L G G+DG S + EG GGD D G
Sbjct: 314 VVLVHLLLRGHGEDG*GFSGGGSGE*TEWGREGTVGGDGSKDRG 183
>BG363504 similar to PIR|T07622|T076 extensin homolog - soybean (fragment),
partial (19%)
Length = 310
Score = 33.9 bits (76), Expect = 0.014
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = -1
Query: 29 LVMAMTTTS--EVVEAVVVVLEGEGDDGGSVSDDSDEDNDSGDSEGDNGGDNDNDGGDSD 86
LV+A+T + +VV +VV+V+ G G+V +D+D G + D + DGG D
Sbjct: 187 LVVAVTGSGSGKVVISVVIVVATSGGGRGNVGGGNDKD---GIGDVDGSSNVGGDGGGDD 17
Query: 87 GG 88
GG
Sbjct: 16 GG 11
Score = 30.0 bits (66), Expect = 0.21
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = -1
Query: 1 MVIMVVTLAAVEEGGRGDSGGGGPLWYILVMAMTTTSEVVEAVVVVLEGEGDDGGSV 57
+VI VV + A GGRG+ GGG +V + V +G GDDGG +
Sbjct: 151 VVISVVIVVATSGGGRGNVGGGND--------KDGIGDVDGSSNVGGDGGGDDGGGI 5
>TC210126 similar to UP|NUCL_HUMAN (P19338) Nucleolin (Protein C23), partial
(7%)
Length = 735
Score = 33.5 bits (75), Expect = 0.019
Identities = 19/48 (39%), Positives = 24/48 (49%), Gaps = 11/48 (22%)
Frame = +3
Query: 50 EGDDGGSVSDDSDEDND----SGDSEGD-------NGGDNDNDGGDSD 86
E D+ G DD ED + GD EGD NGG +D+D D+D
Sbjct: 363 EDDEDGHDQDDDGEDEEFSGEEGDEEGDPEDDPEANGGGSDDDDDDND 506
Score = 32.7 bits (73), Expect = 0.032
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 50 EGDDGGSVSDDSDEDNDSGDSEGDNGGDNDNDGGDSD 86
E + GGS DD D DN+ D +G++ + +++ D +
Sbjct: 462 EANGGGSDDDDDDNDNEEDDDDGEDEEEEEDEEEDEE 572
Score = 29.6 bits (65), Expect = 0.27
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +3
Query: 48 EGEGDDGGSVSDDSDEDNDSGDSEGDNGGDNDNDGGDSD 86
E + + G SDD D+DND+ + + D + + + + D
Sbjct: 450 EDDPEANGGGSDDDDDDNDNEEDDDDGEDEEEEEDEEED 566
Score = 29.6 bits (65), Expect = 0.27
Identities = 14/43 (32%), Positives = 22/43 (50%), Gaps = 2/43 (4%)
Frame = +3
Query: 47 LEGEGDDGGSVSDDSDEDNDSGDSEGDNGGDNDNDG--GDSDG 87
LE + + D DED++ G + D+G D + G GD +G
Sbjct: 315 LENKNSETEDDDKDGDEDDEDGHDQDDDGEDEEFSGEEGDEEG 443
>TC210655
Length = 723
Score = 33.5 bits (75), Expect = 0.019
Identities = 16/31 (51%), Positives = 23/31 (73%)
Frame = +1
Query: 50 EGDDGGSVSDDSDEDNDSGDSEGDNGGDNDN 80
+GD GGS S +++ED DS +S DNGG ++N
Sbjct: 163 KGDIGGSPSKENNED-DSDESHKDNGGGSEN 252
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.305 0.135 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,779,688
Number of Sequences: 63676
Number of extensions: 34242
Number of successful extensions: 1134
Number of sequences better than 10.0: 283
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of query: 89
length of database: 12,639,632
effective HSP length: 65
effective length of query: 24
effective length of database: 8,500,692
effective search space: 204016608
effective search space used: 204016608
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 52 (24.6 bits)
Lotus: description of TM0009.4