BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0008.9
(276 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC221300 similar to UP|Q9LDT3 (Q9LDT3) F26F24.29 (F28C11.6), par... 166 4e-46
TC211093 similar to UP|Q9LDT3 (Q9LDT3) F26F24.29 (F28C11.6), par... 142 2e-39
TC215834 similar to UP|Q6SRZ8 (Q6SRZ8) YABBY2-like transcription... 149 2e-36
TC216102 homologue to GB|AAO39962.1|28372960|BT003734 At2g26580 ... 145 1e-35
TC206208 similar to UP|Q6SS00 (Q6SS00) YABBY-like transcription ... 144 4e-35
TC215832 similar to UP|Q6SRZ8 (Q6SRZ8) YABBY2-like transcription... 137 4e-33
TC203364 similar to UP|Q6SS00 (Q6SS00) YABBY-like transcription ... 117 4e-27
BU579031 similar to GP|4928751|gb|A YABBY2 {Arabidopsis thaliana... 116 1e-26
AW432989 similar to GP|4928751|gb|A YABBY2 {Arabidopsis thaliana... 107 8e-24
CD416578 similar to GP|4928753|gb|A YABBY3 {Arabidopsis thaliana... 85 4e-17
TC215833 homologue to UP|Q9XFB0 (Q9XFB0) YABBY2, partial (43%) 80 1e-15
TC203646 similar to UP|Q84LC5 (Q84LC5) YABBY transcription facto... 77 8e-15
CD411238 homologue to GP|3193331|gb|A F6N15.22 gene product {Ara... 70 1e-12
CA852527 homologue to GP|3193331|gb|A F6N15.22 gene product {Ara... 70 1e-12
TC208759 similar to GB|AAO39962.1|28372960|BT003734 At2g26580 {A... 67 7e-12
AW734910 42 2e-04
BM891525 similar to GP|21617944|gb| transcription factor CRC {Ar... 39 0.002
BE059069 33 0.14
TC224564 similar to PIR|T51159|T51159 HMG protein [imported] - A... 32 0.24
TC217775 similar to UP|O22944 (O22944) Expressed protein (At2g41... 32 0.41
>TC221300 similar to UP|Q9LDT3 (Q9LDT3) F26F24.29 (F28C11.6), partial (20%)
Length = 759
Score = 166 bits (421), Expect(2) = 4e-46
Identities = 81/95 (85%), Positives = 85/95 (89%)
Frame = +3
Query: 136 SCSKEDANMTFNSHSGASMMTYSDCEEEDLIPMSNFVNKPPEKRQRTPSAYNRFIKEEIK 195
S S++DAN T H+ ASMMTYSDCEEED IPMSN VNKPPEKRQRTPSAYN FIKEEIK
Sbjct: 24 SSSEQDANKTLKRHN-ASMMTYSDCEEEDAIPMSNVVNKPPEKRQRTPSAYNCFIKEEIK 200
Query: 196 RLKAENPDMAHKEAFSTAAKNWANFPPTQCKGDEE 230
RLKAENPDMAH+EAFSTAAKNWANFPPTQCK DEE
Sbjct: 201 RLKAENPDMAHREAFSTAAKNWANFPPTQCKEDEE 305
Score = 35.8 bits (81), Expect(2) = 4e-46
Identities = 22/44 (50%), Positives = 27/44 (61%)
Frame = +1
Query: 232 VLHPCITSMCGTFRSMKKDKVSEEERSQGTLSWKGHRLSEGTSA 275
+L P T M + + KK KV EERSQ WKGHRL+E +SA
Sbjct: 337 ILTPKWTLMLWSMK--KKVKVYVEERSQRIPYWKGHRLNEESSA 462
>TC211093 similar to UP|Q9LDT3 (Q9LDT3) F26F24.29 (F28C11.6), partial (19%)
Length = 762
Score = 142 bits (357), Expect(2) = 2e-39
Identities = 70/79 (88%), Positives = 74/79 (93%), Gaps = 2/79 (2%)
Frame = +2
Query: 154 MMTYSDCEEEDLIPMSNFV-NKPPEKRQRTPSAYNRFIKEEIKRLKAENPDMAHKEAFST 212
MMTYSDCEEED+IPMS+ V NKPPEKRQRTPSAYN FIKEEIKRLKAENP+M+HKEAFST
Sbjct: 2 MMTYSDCEEEDIIPMSHHVVNKPPEKRQRTPSAYNCFIKEEIKRLKAENPEMSHKEAFST 181
Query: 213 AAKNWANFPPTQ-CKGDEE 230
AAKNWANFP TQ CKGDEE
Sbjct: 182 AAKNWANFPQTQWCKGDEE 238
Score = 38.1 bits (87), Expect(2) = 2e-39
Identities = 20/31 (64%), Positives = 22/31 (70%)
Frame = +3
Query: 245 RSMKKDKVSEEERSQGTLSWKGHRLSEGTSA 275
RSMKK KVS EER Q SWK H L+E +SA
Sbjct: 300 RSMKKFKVSVEERCQEIPSWKRHSLNEESSA 392
>TC215834 similar to UP|Q6SRZ8 (Q6SRZ8) YABBY2-like transcription factor
YAB2, partial (70%)
Length = 961
Score = 149 bits (375), Expect = 2e-36
Identities = 84/162 (51%), Positives = 102/162 (62%)
Frame = +1
Query: 60 EQICYVQCGFCTTILMVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASFVPFHLLASLTHL 119
E++CYV C FC T L VSVPCSSL +VTVRCGHC +LL+VNM AS F T L
Sbjct: 127 ERVCYVHCNFCNTTLAVSVPCSSLLTIVTVRCGHCANLLTVNM-GASLQTFPS-QDTTQL 300
Query: 120 QVIDYLTLTNSMFIYFSCSKEDANMTFNSHSGASMMTYSDCEEEDLIPMSNFVNKPPEKR 179
Q + + +CSKE S S D +++ IP +PPEKR
Sbjct: 301 Q-------RQHLSVQEACSKE-----LGSSSKCKTFETVDHDQQPRIPPI----RPPEKR 432
Query: 180 QRTPSAYNRFIKEEIKRLKAENPDMAHKEAFSTAAKNWANFP 221
QR PSAYNRFIKEEI+R+KA NPD++H+EAFSTAAKNWA+FP
Sbjct: 433 QRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 558
>TC216102 homologue to GB|AAO39962.1|28372960|BT003734 At2g26580 {Arabidopsis
thaliana;} , partial (75%)
Length = 1083
Score = 145 bits (367), Expect = 1e-35
Identities = 79/166 (47%), Positives = 102/166 (60%), Gaps = 3/166 (1%)
Frame = +3
Query: 59 PEQICYVQCGFCTTILMVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASFVPFHLLASLTH 118
PEQ+CY+ C FC +L VSVPCSSL +VTVRCGHCT+L SVNM A
Sbjct: 216 PEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAA------------- 356
Query: 119 LQVIDYLTLTNSMFIYFSCSKE---DANMTFNSHSGASMMTYSDCEEEDLIPMSNFVNKP 175
Q + + + C+ E D T ++ +M + E+ + VN+P
Sbjct: 357 FQSLSWQDVQGPG----QCNPEYRIDTGSTSKCNNRIAMRAPTTHVTEERV-----VNRP 509
Query: 176 PEKRQRTPSAYNRFIKEEIKRLKAENPDMAHKEAFSTAAKNWANFP 221
PEKRQR PSAYN+FIKEEI+R+KA NPD++H+EAFSTAAKNWA+FP
Sbjct: 510 PEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 647
>TC206208 similar to UP|Q6SS00 (Q6SS00) YABBY-like transcription factor
GRAMINIFOLIA, partial (90%)
Length = 1250
Score = 144 bits (363), Expect = 4e-35
Identities = 82/165 (49%), Positives = 101/165 (60%), Gaps = 3/165 (1%)
Frame = +1
Query: 60 EQICYVQCGFCTTILMVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASFVPFHLLASLTHL 119
+Q+CYV C FC T+L VSVPC+SL VTVRCGHCT+LLSVNM LL S L
Sbjct: 358 DQLCYVHCNFCDTVLAVSVPCTSLFKNVTVRCGHCTNLLSVNMRGL------LLPSANQL 519
Query: 120 QVIDYLTLTNSMFIYFSCSKEDANMTFNSHSGAS---MMTYSDCEEEDLIPMSNFVNKPP 176
+ + T + + N+ N + M T EE P S N+PP
Sbjct: 520 H-LGHTFFTPQNLMEEIRNAPSTNIMMNQLPNPNDLVMSTMRGGPEETPKPPS--ANRPP 690
Query: 177 EKRQRTPSAYNRFIKEEIKRLKAENPDMAHKEAFSTAAKNWANFP 221
EKRQR PSAYNRFIK+EI+R+KA NPD++H+EAFS AAKNWA+FP
Sbjct: 691 EKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFP 825
>TC215832 similar to UP|Q6SRZ8 (Q6SRZ8) YABBY2-like transcription factor
YAB2, partial (69%)
Length = 834
Score = 137 bits (346), Expect = 4e-33
Identities = 77/164 (46%), Positives = 99/164 (59%), Gaps = 2/164 (1%)
Frame = +3
Query: 60 EQICYVQCGFCTTILMVSVPCSSLSMVVTVRCGHCTSLLSVNMMKA--SFVPFHLLASLT 117
E++CYV C FC TIL VSVP SSL +VTVRCGHC +LLSVNM + +F P +
Sbjct: 12 ERVCYVHCNFCNTILAVSVPYSSLLTIVTVRCGHCANLLSVNMGASLQAFPPQDPQSQKQ 191
Query: 118 HLQVIDYLTLTNSMFIYFSCSKEDANMTFNSHSGASMMTYSDCEEEDLIPMSNFVNKPPE 177
HL +E ++ S S S + + E +L + +P E
Sbjct: 192 HLSF-----------------QEPSSKELGSSSKCSKIAPFEAVEHELPRIPPI--RPTE 314
Query: 178 KRQRTPSAYNRFIKEEIKRLKAENPDMAHKEAFSTAAKNWANFP 221
KR R PSAYNRFIKEEI+R+KA NPD++H+EAFS+AAKNWA+FP
Sbjct: 315 KRHRVPSAYNRFIKEEIQRIKASNPDISHREAFSSAAKNWAHFP 446
>TC203364 similar to UP|Q6SS00 (Q6SS00) YABBY-like transcription factor
GRAMINIFOLIA, partial (65%)
Length = 1094
Score = 117 bits (294), Expect = 4e-27
Identities = 72/152 (47%), Positives = 93/152 (60%), Gaps = 6/152 (3%)
Frame = +2
Query: 76 VSVPCSSLSMVVTVRCGHCTSLLSVNM---MKASFVPFHL---LASLTHLQVIDYLTLTN 129
VSVPC+SL VTVRCGHCT+LL VNM + S FHL S +H +++ + +
Sbjct: 209 VSVPCTSLFKTVTVRCGHCTNLLPVNMRGLLMPSPTQFHLGHSFFSPSH-NLLEEIPNPS 385
Query: 130 SMFIYFSCSKEDANMTFNSHSGASMMTYSDCEEEDLIPMSNFVNKPPEKRQRTPSAYNRF 189
F+ N T S S M +E P+ +N+PPEKRQR PSAYNRF
Sbjct: 386 PNFLM--------NQTNLSASNEFSMPARIAADELPRPI---MNRPPEKRQRVPSAYNRF 532
Query: 190 IKEEIKRLKAENPDMAHKEAFSTAAKNWANFP 221
IK+EI+R+K+ NPD+ H+EAFS AAKNWA+FP
Sbjct: 533 IKDEIQRIKSVNPDITHREAFSAAAKNWAHFP 628
>BU579031 similar to GP|4928751|gb|A YABBY2 {Arabidopsis thaliana}, partial
(50%)
Length = 409
Score = 116 bits (291), Expect = 1e-26
Identities = 70/153 (45%), Positives = 89/153 (57%)
Frame = +1
Query: 60 EQICYVQCGFCTTILMVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASFVPFHLLASLTHL 119
E++CYV C FC TIL VSVP SSL +VTVRCGHC +LLSVNM ASL
Sbjct: 13 ERVCYVHCNFCNTILAVSVPYSSLLTIVTVRCGHCANLLSVNMG----------ASLQAF 162
Query: 120 QVIDYLTLTNSMFIYFSCSKEDANMTFNSHSGASMMTYSDCEEEDLIPMSNFVNKPPEKR 179
D L+ +E ++ S S S + + E +L + +P EKR
Sbjct: 163 PPQDPQHLS---------FQEPSSKELGSSSKCSKIAPFEAVEHELPRIPPI--RPTEKR 309
Query: 180 QRTPSAYNRFIKEEIKRLKAENPDMAHKEAFST 212
R PSAYNRFIKEEI+R+KA NPD++H+EAFS+
Sbjct: 310 HRVPSAYNRFIKEEIQRIKASNPDISHREAFSS 408
>AW432989 similar to GP|4928751|gb|A YABBY2 {Arabidopsis thaliana}, partial
(47%)
Length = 444
Score = 107 bits (266), Expect = 8e-24
Identities = 67/147 (45%), Positives = 83/147 (55%)
Frame = +3
Query: 60 EQICYVQCGFCTTILMVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASFVPFHLLASLTHL 119
E++CYV C FC TIL VSVP SSL +VTVRCGHC +LLSVNM ASL
Sbjct: 51 ERVCYVHCNFCNTILAVSVPYSSLLTIVTVRCGHCANLLSVNMG----------ASLQAF 200
Query: 120 QVIDYLTLTNSMFIYFSCSKEDANMTFNSHSGASMMTYSDCEEEDLIPMSNFVNKPPEKR 179
D S SC KE + + + A + E+ + P+ +P EKR
Sbjct: 201 PPQDPQKQLLSFEEPSSC-KELGSSSSKCNKIAPFHEAVEHEQPRIPPI-----RPTEKR 362
Query: 180 QRTPSAYNRFIKEEIKRLKAENPDMAH 206
R PSAYNRFIKEEI+R+KA NPD++H
Sbjct: 363 HRVPSAYNRFIKEEIQRIKASNPDISH 443
>CD416578 similar to GP|4928753|gb|A YABBY3 {Arabidopsis thaliana}, partial
(32%)
Length = 634
Score = 84.7 bits (208), Expect = 4e-17
Identities = 37/55 (67%), Positives = 45/55 (81%)
Frame = -2
Query: 167 PMSNFVNKPPEKRQRTPSAYNRFIKEEIKRLKAENPDMAHKEAFSTAAKNWANFP 221
P N+PPEKRQR PSAYNRFIK+EI+R+KA NPD++H+EAF AAKNWA+ P
Sbjct: 582 PKPPSANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFRAAAKNWAHVP 418
>TC215833 homologue to UP|Q9XFB0 (Q9XFB0) YABBY2, partial (43%)
Length = 684
Score = 79.7 bits (195), Expect = 1e-15
Identities = 39/58 (67%), Positives = 47/58 (80%)
Frame = +2
Query: 159 DCEEEDLIPMSNFVNKPPEKRQRTPSAYNRFIKEEIKRLKAENPDMAHKEAFSTAAKN 216
D E++ IP +PPEKRQR PSAYNRFIKEEI+R+KA NPD++H+EAFSTAAKN
Sbjct: 5 DHEQQPRIPPI----RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKN 166
>TC203646 similar to UP|Q84LC5 (Q84LC5) YABBY transcription factor CDM51,
partial (39%)
Length = 615
Score = 77.0 bits (188), Expect = 8e-15
Identities = 33/44 (75%), Positives = 40/44 (90%)
Frame = +3
Query: 178 KRQRTPSAYNRFIKEEIKRLKAENPDMAHKEAFSTAAKNWANFP 221
KRQR PSAYNRFIK+EI+R+K+ NPD+ H+EAFS AAKNWA+FP
Sbjct: 33 KRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFP 164
>CD411238 homologue to GP|3193331|gb|A F6N15.22 gene product {Arabidopsis
thaliana}, partial (23%)
Length = 428
Score = 69.7 bits (169), Expect = 1e-12
Identities = 31/40 (77%), Positives = 37/40 (92%)
Frame = -1
Query: 177 EKRQRTPSAYNRFIKEEIKRLKAENPDMAHKEAFSTAAKN 216
EKR R PSAYNRFIKEEI+R+KA NPD++H+EAFS+AAKN
Sbjct: 278 EKRHRVPSAYNRFIKEEIQRIKASNPDISHREAFSSAAKN 159
>CA852527 homologue to GP|3193331|gb|A F6N15.22 gene product {Arabidopsis
thaliana}, partial (23%)
Length = 651
Score = 69.7 bits (169), Expect = 1e-12
Identities = 31/40 (77%), Positives = 37/40 (92%)
Frame = +1
Query: 177 EKRQRTPSAYNRFIKEEIKRLKAENPDMAHKEAFSTAAKN 216
EKR R PSAYNRFIKEEI+R+KA NPD++H+EAFS+AAKN
Sbjct: 241 EKRHRVPSAYNRFIKEEIQRIKASNPDISHREAFSSAAKN 360
>TC208759 similar to GB|AAO39962.1|28372960|BT003734 At2g26580 {Arabidopsis
thaliana;} , partial (25%)
Length = 1182
Score = 67.4 bits (163), Expect = 7e-12
Identities = 39/67 (58%), Positives = 40/67 (59%), Gaps = 26/67 (38%)
Frame = +2
Query: 176 PEKRQRTPSAYNRFIK--------------------------EEIKRLKAENPDMAHKEA 209
PEKRQRTPSAYN FIK EEIKRLKAENPDMAH+EA
Sbjct: 14 PEKRQRTPSAYNCFIK**FNTQSCIELKFKL*ILIRVFI*CREEIKRLKAENPDMAHREA 193
Query: 210 FSTAAKN 216
FSTAAKN
Sbjct: 194 FSTAAKN 214
>AW734910
Length = 361
Score = 42.4 bits (98), Expect = 2e-04
Identities = 41/141 (29%), Positives = 60/141 (42%), Gaps = 2/141 (1%)
Frame = +2
Query: 77 SVPCSSLSMVVTVRCGHCTSLLSVNMMKASFVPFHLLASLTHLQVID--YLTLTNSMFIY 134
SVP +SL ++TVRCGHC +LLS N M AS F H + + S IY
Sbjct: 2 SVPYNSLLTILTVRCGHCANLLSFN-MGASLQAFPTQDPQKHHLIFQ*PIIKELGSSSIY 178
Query: 135 FSCSKEDANMTFNSHSGASMMTYSDCEEEDLIPMSNFVNKPPEKRQRTPSAYNRFIKEEI 194
S FN+ + IP + KR P+ Y FIK +
Sbjct: 179 NKIS------PFNAVK----------HKLPTIPPI----QSTHKRHHIPTTYLLFIKYKS 298
Query: 195 KRLKAENPDMAHKEAFSTAAK 215
+ + ++PD+ H++ +A K
Sbjct: 299 Q*IITDHPDIYHRDTVISATK 361
>BM891525 similar to GP|21617944|gb| transcription factor CRC {Arabidopsis
thaliana}, partial (13%)
Length = 397
Score = 39.3 bits (90), Expect = 0.002
Identities = 17/30 (56%), Positives = 23/30 (76%)
Frame = +3
Query: 193 EIKRLKAENPDMAHKEAFSTAAKNWANFPP 222
EI+R+K+ NPD+ H+EAFS AAKN + P
Sbjct: 3 EIQRIKSVNPDITHREAFSAAAKNVSILSP 92
>BE059069
Length = 411
Score = 33.1 bits (74), Expect = 0.14
Identities = 17/41 (41%), Positives = 23/41 (55%)
Frame = +2
Query: 174 KPPEKRQRTPSAYNRFIKEEIKRLKAENPDMAHKEAFSTAA 214
K P K +R PSA+ F++E K KAENP++ AA
Sbjct: 83 KDPNKPKRPPSAFFVFLEEFRKTFKAENPNVKAVSVVGNAA 205
>TC224564 similar to PIR|T51159|T51159 HMG protein [imported] - Arabidopsis
thaliana {Arabidopsis thaliana;} , partial (82%)
Length = 833
Score = 32.3 bits (72), Expect = 0.24
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +1
Query: 174 KPPEKRQRTPSAYNRFIKEEIKRLKAENPDM 204
K P K +R PSA+ F++E K KAENP++
Sbjct: 226 KDPNKPKRPPSAFFVFLEEFRKTFKAENPNV 318
>TC217775 similar to UP|O22944 (O22944) Expressed protein
(At2g41760/T11A7.14), partial (77%)
Length = 1096
Score = 31.6 bits (70), Expect = 0.41
Identities = 25/79 (31%), Positives = 36/79 (44%), Gaps = 7/79 (8%)
Frame = +3
Query: 25 HLSITSFSSSFTHTYSHPHIQKDTMSTLNHLFDLP--EQIC-----YVQCGFCTTILMVS 77
HLS+ F+ + + HPHI S + H+F LP Q C +Q G+C +
Sbjct: 744 HLSVIFFAIATFILFWHPHI---NTSLVLHMFQLPSFHQRCRSNSVSLQMGYCKNV---- 902
Query: 78 VPCSSLSMVVTVRCGHCTS 96
SS S+ + V C C S
Sbjct: 903 ---SSESVFLRVVCKECKS 950
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.319 0.129 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,492,848
Number of Sequences: 63676
Number of extensions: 252604
Number of successful extensions: 1718
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 1658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1701
length of query: 276
length of database: 12,639,632
effective HSP length: 96
effective length of query: 180
effective length of database: 6,526,736
effective search space: 1174812480
effective search space used: 1174812480
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0008.9