BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0008.6
(262 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC232949 homologue to UP|Q9FIR6 (Q9FIR6) Gb|AAD25674.1, partial ... 39 0.002
TC214476 weakly similar to UP|Q8L685 (Q8L685) Pherophorin-dz1 pr... 38 0.004
AI900422 38 0.004
TC229232 similar to GB|AAP37829.1|30725614|BT008470 At5g12470 {A... 37 0.007
TC216567 similar to UP|Q8S9A1 (Q8S9A1) Glucosyltransferase-8 (Fr... 37 0.012
TC205770 UP|O49946 (O49946) Extensin-like protein (Fragment), pa... 37 0.012
TC211031 weakly similar to UP|Q8L685 (Q8L685) Pherophorin-dz1 pr... 36 0.016
TC219641 similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%) 36 0.016
TC215923 similar to GB|AAS68109.1|45592910|BT011785 At2g38360 {A... 36 0.016
TC231558 weakly similar to UP|Q8LQ09 (Q8LQ09) OJ1294_F06.10 prot... 36 0.020
BU765146 similar to GP|21322711|e pherophorin-dz1 protein {Volvo... 36 0.020
TC214257 weakly similar to UP|Q8L685 (Q8L685) Pherophorin-dz1 pr... 35 0.027
TC205769 similar to UP|Q9DVW0 (Q9DVW0) PxORF73 peptide, partial ... 35 0.027
TC211086 similar to UP|Q7XJQ0 (Q7XJQ0) At2g37860 protein, partia... 35 0.027
BU577461 similar to PIR|T11622|T11 extensin class 1 precursor - ... 35 0.027
TC206176 weakly similar to UP|Q8LPA7 (Q8LPA7) Cold shock protein... 35 0.027
TC219729 weakly similar to UP|Q8L685 (Q8L685) Pherophorin-dz1 pr... 35 0.035
TC204724 similar to UP|Q9AXQ2 (Q9AXQ2) Mitochondrial processing ... 34 0.059
TC219649 weakly similar to UP|Q95JD1 (Q95JD1) Basic proline-rich... 34 0.077
BU764155 weakly similar to GP|6523547|emb| hydroxyproline-rich g... 34 0.077
>TC232949 homologue to UP|Q9FIR6 (Q9FIR6) Gb|AAD25674.1, partial (20%)
Length = 647
Score = 39.3 bits (90), Expect = 0.002
Identities = 22/49 (44%), Positives = 27/49 (54%), Gaps = 3/49 (6%)
Frame = +2
Query: 196 GGDSGDGGNNGGGSGHGDKGDGGDE-DDSDNG--SDSGALIRLRVIVRD 241
GGD G N+GGG G D GD D DD D+G D G L R R++ +
Sbjct: 290 GGDIGKKINHGGGDGGDDDGDDDDYFDDFDDGDEGDEGGLFRRRILFEE 436
>TC214476 weakly similar to UP|Q8L685 (Q8L685) Pherophorin-dz1 protein
precursor, partial (14%)
Length = 642
Score = 38.1 bits (87), Expect = 0.004
Identities = 19/36 (52%), Positives = 21/36 (57%), Gaps = 1/36 (2%)
Frame = -3
Query: 196 GGDSGDGGNNGGGSGHGDKG-DGGDEDDSDNGSDSG 230
GG SG GG+ GGGSG G G GG S+ G SG
Sbjct: 481 GGGSGGGGSQGGGSGSGGGGYGGGGSGGSEGGGSSG 374
Score = 37.4 bits (85), Expect = 0.007
Identities = 22/48 (45%), Positives = 25/48 (51%), Gaps = 7/48 (14%)
Frame = -3
Query: 196 GGDSGDGGNNGGGSGHGDKGD-------GGDEDDSDNGSDSGALIRLR 236
GG G GG+ GGG G GDKGD GD+D D G G I +R
Sbjct: 343 GGGYGGGGDKGGGIG-GDKGDYHHGKGGKGDKDGGDKGGGGGY*ISIR 203
Score = 36.6 bits (83), Expect = 0.012
Identities = 16/31 (51%), Positives = 17/31 (54%)
Frame = -3
Query: 196 GGDSGDGGNNGGGSGHGDKGDGGDEDDSDNG 226
GG SG GG GGG G G G GGD+ G
Sbjct: 388 GGSSGGGGGGGGGGGGGGYGGGGDKGGGIGG 296
Score = 35.8 bits (81), Expect = 0.020
Identities = 15/35 (42%), Positives = 18/35 (50%)
Frame = -3
Query: 196 GGDSGDGGNNGGGSGHGDKGDGGDEDDSDNGSDSG 230
GG S GG+ GG G+G G GG E +G G
Sbjct: 466 GGGSQGGGSGSGGGGYGGGGSGGSEGGGSSGGGGG 362
Score = 33.5 bits (75), Expect = 0.10
Identities = 16/35 (45%), Positives = 19/35 (53%), Gaps = 5/35 (14%)
Frame = -3
Query: 197 GDSGDGGNNGGGSGHGDKGD-----GGDEDDSDNG 226
G G GG GGG G+G GD GGD+ D +G
Sbjct: 376 GGGGGGGGGGGGGGYGGGGDKGGGIGGDKGDYHHG 272
Score = 31.2 bits (69), Expect = 0.50
Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Frame = -3
Query: 196 GGDSGDGGNNGGGSGHGDKGD--GGDEDDSDNGSDSG 230
GG G GG+ GGG G G GG E G SG
Sbjct: 577 GGSQGGGGSAGGGGS*GGSGGSAGGGEGSGSQGGGSG 467
Score = 30.8 bits (68), Expect = 0.65
Identities = 16/36 (44%), Positives = 18/36 (49%), Gaps = 1/36 (2%)
Frame = -3
Query: 196 GGDSGDGGNNGGGSGHGDKGDG-GDEDDSDNGSDSG 230
G G GG+ GGG G G +G G G GS SG
Sbjct: 538 GS*GGSGGSAGGGEGSGSQGGGSGGGGSQGGGSGSG 431
Score = 30.4 bits (67), Expect = 0.85
Identities = 16/36 (44%), Positives = 17/36 (46%), Gaps = 2/36 (5%)
Frame = -3
Query: 197 GDSGDGGNNGGGS--GHGDKGDGGDEDDSDNGSDSG 230
G G GG+ GGGS G G G GG G D G
Sbjct: 418 GGGGSGGSEGGGSSGGGGGGGGGGGGGGYGGGGDKG 311
Score = 30.0 bits (66), Expect = 1.1
Identities = 15/37 (40%), Positives = 19/37 (50%), Gaps = 2/37 (5%)
Frame = -3
Query: 196 GGDSGDGGNNGGG--SGHGDKGDGGDEDDSDNGSDSG 230
GG +G GG+ GGG G G +G GG + SG
Sbjct: 628 GGSAGGGGSKGGGGYGGGGSQGGGGSAGGGGS*GGSG 518
Score = 29.6 bits (65), Expect = 1.5
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -3
Query: 196 GGDSGDGGNNGGGSGHGDKGD-GGDEDDSDNGSDSGA 231
GG G GG+ GGG G G GG + G SG+
Sbjct: 595 GGGYGGGGSQGGGGSAGGGGS*GGSGGSAGGGEGSGS 485
Score = 28.9 bits (63), Expect = 2.5
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = -3
Query: 196 GGDSGDGGNNG--GGSGHGDKGDGGDEDDSDNGSDSG 230
GG +G GG+ G GGS G +G G S G G
Sbjct: 559 GGSAGGGGS*GGSGGSAGGGEGSGSQGGGSGGGGSQG 449
Score = 28.1 bits (61), Expect = 4.2
Identities = 13/31 (41%), Positives = 14/31 (44%)
Frame = -3
Query: 200 GDGGNNGGGSGHGDKGDGGDEDDSDNGSDSG 230
G GG+ GGG G G GG GS G
Sbjct: 634 GGGGSAGGGGSKGGGGYGGGGSQGGGGSAGG 542
>AI900422
Length = 373
Score = 38.1 bits (87), Expect = 0.004
Identities = 18/37 (48%), Positives = 22/37 (58%), Gaps = 2/37 (5%)
Frame = -3
Query: 192 MVVVGGDSGDGGNNGGGSGH--GDKGDGGDEDDSDNG 226
+VVVGG G GG G GH D+GDG +E+ D G
Sbjct: 125 VVVVGGGGGGGGERGARGGHVGEDRGDGEEEERGDGG 15
>TC229232 similar to GB|AAP37829.1|30725614|BT008470 At5g12470 {Arabidopsis
thaliana;} , partial (73%)
Length = 1309
Score = 37.4 bits (85), Expect = 0.007
Identities = 20/43 (46%), Positives = 24/43 (55%)
Frame = +3
Query: 191 TMVVVGGDSGDGGNNGGGSGHGDKGDGGDEDDSDNGSDSGALI 233
T V GG G G +G G GHG G GG D+ DNG + AL+
Sbjct: 24 TGVPDGGSFGGHGGHGHG-GHGGHGGGGGHDNEDNGRKNEALL 149
>TC216567 similar to UP|Q8S9A1 (Q8S9A1) Glucosyltransferase-8 (Fragment),
partial (16%)
Length = 432
Score = 36.6 bits (83), Expect = 0.012
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 19/78 (24%)
Frame = -3
Query: 195 VGGDSGDGGNNGGGSG---------HGDKGDGGDEDDSDNGSDSG----------ALIRL 235
VG D DGG GGG G GD G G + DS++G G + L
Sbjct: 277 VGED--DGGGGGGGGGLRNWRATAAVGDGGTGDGDGDSESGGGRGHVFFVVVFFVLFVLL 104
Query: 236 RVIVRDKHMYFAEQSISL 253
R++V H++FAE + L
Sbjct: 103 RLVVVVVHVFFAENGVVL 50
>TC205770 UP|O49946 (O49946) Extensin-like protein (Fragment), partial (7%)
Length = 708
Score = 36.6 bits (83), Expect = 0.012
Identities = 18/34 (52%), Positives = 20/34 (57%), Gaps = 2/34 (5%)
Frame = +3
Query: 198 DSGDGGNNGGGSGHGDKGDGGDED--DSDNGSDS 229
D GDG GGG D GDGG DS+NG+DS
Sbjct: 333 DEGDGVGGGGGGDGWDNGDGGGSGFWDSNNGNDS 434
Score = 32.0 bits (71), Expect = 0.29
Identities = 16/31 (51%), Positives = 18/31 (57%), Gaps = 2/31 (6%)
Frame = +3
Query: 194 VVGGDSGDGGNN--GGGSGHGDKGDGGDEDD 222
V GG GDG +N GGGSG D +G D D
Sbjct: 348 VGGGGGGDGWDNGDGGGSGFWDSNNGNDSTD 440
>TC211031 weakly similar to UP|Q8L685 (Q8L685) Pherophorin-dz1 protein
precursor, partial (11%)
Length = 678
Score = 36.2 bits (82), Expect = 0.016
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -3
Query: 196 GGDSGDGGNNGGG--SGHGDKGDGGDEDDSDNGSDSG 230
G DSG GG GGG G+G GDGG+ D G+ G
Sbjct: 310 GVDSGIGGGKGGGGDGGNGGGGDGGNGGGGDGGNGGG 200
Score = 35.4 bits (80), Expect = 0.027
Identities = 17/35 (48%), Positives = 20/35 (56%), Gaps = 1/35 (2%)
Frame = -3
Query: 197 GDSGDGGNNGGGSG-HGDKGDGGDEDDSDNGSDSG 230
G GDGGN GGG G +G GDGG+ +G G
Sbjct: 280 GGGGDGGNGGGGDGGNGGGGDGGNGGGGASGIGGG 176
Score = 34.3 bits (77), Expect = 0.059
Identities = 15/38 (39%), Positives = 21/38 (54%)
Frame = -3
Query: 195 VGGDSGDGGNNGGGSGHGDKGDGGDEDDSDNGSDSGAL 232
+GG G GG +GG G GD G+GG D + G + +
Sbjct: 295 IGGGKG-GGGDGGNGGGGDGGNGGGGDGGNGGGGASGI 185
Score = 33.9 bits (76), Expect = 0.077
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Frame = -3
Query: 196 GGDSGDGGNNGGG-SGHGD-----KGDGGDEDDSDNGSDSG 230
GG GGN GGG SG GD +GDGG D G G
Sbjct: 430 GGGGASGGNGGGGASGGGDGRFGGEGDGGKGGGGDGGKGGG 308
Score = 29.6 bits (65), Expect = 1.5
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Frame = -3
Query: 184 TKVVVAPTMVVVGGDSGDGGNNGGGSGHGDKGDGGD---EDDSDNGSDSG 230
T+ P + G SG GG GG+G G GGD + D G G
Sbjct: 481 TRYSPGPFGGIGNGGSGGGGGASGGNGGGGASGGGDGRFGGEGDGGKGGG 332
Score = 28.5 bits (62), Expect = 3.2
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 6/28 (21%)
Frame = -3
Query: 197 GDSGDGGNNGGGS------GHGDKGDGG 218
G GDGGN GGG+ GH G GG
Sbjct: 232 GGGGDGGNGGGGASGIGGGGHSLGGGGG 149
Score = 28.5 bits (62), Expect = 3.2
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +1
Query: 113 HYHPIGHHHHRPP 125
HYH + HHHHR P
Sbjct: 403 HYHHLHHHHHRYP 441
>TC219641 similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%)
Length = 942
Score = 36.2 bits (82), Expect = 0.016
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 199 SGDGGNNGGGSGHGDKGDGGDEDDSDNGSDSG 230
+G GG++ G D DGGD+DD DNG D G
Sbjct: 511 NGAGGSDSDGD---DDDDGGDDDDDDNGDDDG 597
>TC215923 similar to GB|AAS68109.1|45592910|BT011785 At2g38360 {Arabidopsis
thaliana;} , partial (76%)
Length = 1055
Score = 36.2 bits (82), Expect = 0.016
Identities = 22/58 (37%), Positives = 35/58 (59%)
Frame = -3
Query: 200 GDGGNNGGGSGHGDKGDGGDEDDSDNGSDSGALIRLRVIVRDKHMYFAEQSISLQDID 257
G+GGN+GGG G G GG ++ G +SG L R+ +IV ++ + AE+++ D D
Sbjct: 807 GNGGNSGGGGGSG----GGRA--AEEGEESGRL-RILLIVEEQILRHAERAVEANDGD 655
>TC231558 weakly similar to UP|Q8LQ09 (Q8LQ09) OJ1294_F06.10 protein, partial
(14%)
Length = 720
Score = 35.8 bits (81), Expect = 0.020
Identities = 17/50 (34%), Positives = 29/50 (58%)
Frame = +3
Query: 175 TVVAATKVMTKVVVAPTMVVVGGDSGDGGNNGGGSGHGDKGDGGDEDDSD 224
TV A ++V ++ P + + +GDGG + G G G+ G GGDE++ +
Sbjct: 177 TVTAISRVGPRI--GPPLAI--SSAGDGGRSSGRGGGGESGGGGDEEEEE 314
>BU765146 similar to GP|21322711|e pherophorin-dz1 protein {Volvox carteri f.
nagariensis}, partial (25%)
Length = 407
Score = 35.8 bits (81), Expect = 0.020
Identities = 15/35 (42%), Positives = 17/35 (47%)
Frame = +1
Query: 196 GGDSGDGGNNGGGSGHGDKGDGGDEDDSDNGSDSG 230
GG+ G GG GGG G G G+GG G G
Sbjct: 94 GGEGGGGGGGGGGGGGGGGGEGGGGGGGGGGGGGG 198
Score = 35.4 bits (80), Expect = 0.027
Identities = 15/35 (42%), Positives = 16/35 (44%)
Frame = +3
Query: 196 GGDSGDGGNNGGGSGHGDKGDGGDEDDSDNGSDSG 230
GG+ G GG GGG G G G GG G G
Sbjct: 84 GGEGGGGGGGGGGGGGGGGGGGGGRGGGGGGGGGG 188
Score = 35.4 bits (80), Expect = 0.027
Identities = 15/35 (42%), Positives = 17/35 (47%)
Frame = +1
Query: 196 GGDSGDGGNNGGGSGHGDKGDGGDEDDSDNGSDSG 230
GG G+GG GGG G G G GG+ G G
Sbjct: 85 GGRGGEGGGGGGGGGGGGGGGGGEGGGGGGGGGGG 189
Score = 35.0 bits (79), Expect = 0.035
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 196 GGDSGDGGNNGGGSGHGDKGDGGDEDDSDNG 226
GG+ G GG GGG G G G GG ++ G
Sbjct: 314 GGEGGGGGGGGGGGGGGGGGRGGRREEGGGG 406
Score = 34.7 bits (78), Expect = 0.045
Identities = 15/35 (42%), Positives = 16/35 (44%)
Frame = +3
Query: 196 GGDSGDGGNNGGGSGHGDKGDGGDEDDSDNGSDSG 230
GG G GG GGG G G G GG+ G G
Sbjct: 21 GGGGGGGGGGGGGGGGGGGGGGGEGGGGGGGGGGG 125
Score = 34.7 bits (78), Expect = 0.045
Identities = 15/35 (42%), Positives = 16/35 (44%)
Frame = +2
Query: 196 GGDSGDGGNNGGGSGHGDKGDGGDEDDSDNGSDSG 230
GG G GG GGG G G G+GG G G
Sbjct: 260 GGGGGGGGGGGGGGGGGGGGEGGGGGGGGGGGGGG 364
Score = 34.7 bits (78), Expect = 0.045
Identities = 15/35 (42%), Positives = 16/35 (44%)
Frame = +3
Query: 196 GGDSGDGGNNGGGSGHGDKGDGGDEDDSDNGSDSG 230
GG G GG GGG G G G+GG G G
Sbjct: 30 GGGGGGGGGGGGGGGGGGGGEGGGGGGGGGGGGGG 134
Score = 34.7 bits (78), Expect = 0.045
Identities = 15/35 (42%), Positives = 16/35 (44%)
Frame = +3
Query: 196 GGDSGDGGNNGGGSGHGDKGDGGDEDDSDNGSDSG 230
GG+ G GG GGG G G G GG G G
Sbjct: 246 GGEGGGGGGGGGGGGGGGXGGGGGGRGEGGGGGGG 350
Score = 34.3 bits (77), Expect = 0.059
Identities = 15/35 (42%), Positives = 16/35 (44%)
Frame = +3
Query: 196 GGDSGDGGNNGGGSGHGDKGDGGDEDDSDNGSDSG 230
GG G+GG GGG G G G GG G G
Sbjct: 75 GGGGGEGGGGGGGGGGGGGGGGGGGGGRGGGGGGG 179
Score = 34.3 bits (77), Expect = 0.059
Identities = 15/35 (42%), Positives = 16/35 (44%)
Frame = +1
Query: 196 GGDSGDGGNNGGGSGHGDKGDGGDEDDSDNGSDSG 230
GG G GG GGG G G G+GG G G
Sbjct: 40 GGGGGGGGGGGGGGGGGRGGEGGGGGGGGGGGGGG 144
Score = 34.3 bits (77), Expect = 0.059
Identities = 15/35 (42%), Positives = 16/35 (44%)
Frame = +1
Query: 196 GGDSGDGGNNGGGSGHGDKGDGGDEDDSDNGSDSG 230
GG G GG GGG G G G GG+ G G
Sbjct: 31 GGGGGGGGGGGGGGGGGGGGRGGEGGGGGGGGGGG 135
Score = 33.5 bits (75), Expect = 0.10
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +1
Query: 196 GGDSGDGGNNGGGSGHGDKGDGGDEDDSDNG 226
GG G GG GGG G G G GG+ + G
Sbjct: 304 GGGGGGGGRGGGGGGGGGGGGGGEGREEGGG 396
Score = 32.7 bits (73), Expect = 0.17
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +1
Query: 196 GGDSGDGGNNGGGSGHGDKGDGG 218
GG G+GG GGG G G G GG
Sbjct: 139 GGGGGEGGGGGGGGGGGGGGGGG 207
Score = 32.3 bits (72), Expect = 0.22
Identities = 14/34 (41%), Positives = 15/34 (43%)
Frame = +2
Query: 197 GDSGDGGNNGGGSGHGDKGDGGDEDDSDNGSDSG 230
G G GG GGG G G G GG+ G G
Sbjct: 254 GGGGGGGGGGGGGGGGGGGGGGEGGGGGGGGGGG 355
Score = 32.0 bits (71), Expect = 0.29
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Frame = +1
Query: 196 GGDSGDGGNNGGGSGHGDKGDG---GDEDDSDNGSDSG 230
GG+ G GG GGG G G G G G E + G G
Sbjct: 148 GGEGGGGGGGGGGGGGGGGGGGVF*GGERXREGGERGG 261
Score = 31.6 bits (70), Expect = 0.38
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +1
Query: 196 GGDSGDGGNNGGGSGHGDKGDGGDEDDSDNGSDSG 230
GG+ GG GGG G G G GG G + G
Sbjct: 4 GGEVCPGGGGGGGGGGGGGGGGGGGGGGGRGGEGG 108
Score = 30.0 bits (66), Expect = 1.1
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = +3
Query: 196 GGDSGDGGNNGGGSGHGDKGDGGDEDDSDNGSDSG 230
GG GG GGG G G G GG G G
Sbjct: 240 GGGGEGGGGGGGGGGGGGGGXGGGGGGRGEGGGGG 344
Score = 28.9 bits (63), Expect = 2.5
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 196 GGDSGDGGNNGGGSGHGDKGDGGDEDDSDNGSD 228
GG G+GG GGG G G G GG+ G +
Sbjct: 312 GGGRGEGGG-GGGGGGGGGGGGGEGGGRRGGGE 407
Score = 26.9 bits (58), Expect = 9.4
Identities = 13/35 (37%), Positives = 14/35 (39%)
Frame = +2
Query: 196 GGDSGDGGNNGGGSGHGDKGDGGDEDDSDNGSDSG 230
GG+ G GGG G G G GG G G
Sbjct: 2 GGERFARGGGGGGGGGGGGGGGGGGGGGGGGGGRG 106
>TC214257 weakly similar to UP|Q8L685 (Q8L685) Pherophorin-dz1 protein
precursor, partial (7%)
Length = 607
Score = 35.4 bits (80), Expect = 0.027
Identities = 18/37 (48%), Positives = 19/37 (50%), Gaps = 1/37 (2%)
Frame = +2
Query: 196 GGDSGDGGNNGGGSGHGDKGD-GGDEDDSDNGSDSGA 231
GG G GG GGG GHG G GG D G D G+
Sbjct: 77 GGGYGGGGGYGGGGGHGGGGGYGGGGRDRGYGGDGGS 187
Score = 33.5 bits (75), Expect = 0.10
Identities = 15/35 (42%), Positives = 16/35 (44%)
Frame = +2
Query: 196 GGDSGDGGNNGGGSGHGDKGDGGDEDDSDNGSDSG 230
GG G GG GGG G GDGG G+ G
Sbjct: 116 GGHGGGGGYGGGGRDRGYGGDGGSRYSRGGGASDG 220
>TC205769 similar to UP|Q9DVW0 (Q9DVW0) PxORF73 peptide, partial (13%)
Length = 464
Score = 35.4 bits (80), Expect = 0.027
Identities = 17/31 (54%), Positives = 20/31 (63%), Gaps = 2/31 (6%)
Frame = +3
Query: 201 DGGNNGGGSGHGDKGDGGDED--DSDNGSDS 229
+GG GGG G D GDGG DS+NG+DS
Sbjct: 294 EGGGVGGGGGGWDNGDGGGSGFWDSNNGNDS 386
Score = 30.0 bits (66), Expect = 1.1
Identities = 16/35 (45%), Positives = 18/35 (50%), Gaps = 5/35 (14%)
Frame = +3
Query: 193 VVVGGDSGDGGN-----NGGGSGHGDKGDGGDEDD 222
VV GG G GG +GGGSG D +G D D
Sbjct: 288 VVEGGGVGGGGGGWDNGDGGGSGFWDSNNGNDSTD 392
>TC211086 similar to UP|Q7XJQ0 (Q7XJQ0) At2g37860 protein, partial (73%)
Length = 1073
Score = 35.4 bits (80), Expect = 0.027
Identities = 15/43 (34%), Positives = 26/43 (59%), Gaps = 1/43 (2%)
Frame = +1
Query: 200 GDGGNNGGGSGHGDKGDGGDEDDSDNGSDS-GALIRLRVIVRD 241
G+G GG+G G G GGD+D +DN + G +++ ++R+
Sbjct: 1 GNGNFGSGGAGDGSGGGGGDDDGNDNEEEEFGPILKYDEVMRE 129
>BU577461 similar to PIR|T11622|T11 extensin class 1 precursor - cowpea,
partial (24%)
Length = 354
Score = 35.4 bits (80), Expect = 0.027
Identities = 20/43 (46%), Positives = 22/43 (50%), Gaps = 12/43 (27%)
Frame = -2
Query: 196 GGDSGDGGNN------GGGSGHGDKGD------GGDEDDSDNG 226
G +GDGG GGG G G+KGD GGDEDD G
Sbjct: 254 G*GAGDGGGGL*****GGGDGDGEKGDL**Y*GGGDEDDGGGG 126
>TC206176 weakly similar to UP|Q8LPA7 (Q8LPA7) Cold shock protein-1, partial
(77%)
Length = 883
Score = 35.4 bits (80), Expect = 0.027
Identities = 18/39 (46%), Positives = 20/39 (51%)
Frame = +3
Query: 196 GGDSGDGGNNGGGSGHGDKGDGGDEDDSDNGSDSGALIR 234
GG G GG GGG G+G G GG N +SG L R
Sbjct: 354 GGGYGGGGGYGGGGGYGGGGRGGGGGACYNCGESGHLAR 470
Score = 30.0 bits (66), Expect = 1.1
Identities = 16/39 (41%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Frame = +3
Query: 196 GGDSGDGGNNGGGSGH---GDKGDGGDEDDSDNGSDSGA 231
GG G GG GGG G+ G G GG G GA
Sbjct: 318 GGRGGGGGGYGGGGGYGGGGGYGGGGGYGGGGRGGGGGA 434
Score = 27.7 bits (60), Expect = 5.5
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = +3
Query: 196 GGDSGDGGNNGGGSGHGDKGDGGDEDDSDNGSDSG 230
GG S GG GGG G+G G G G G
Sbjct: 300 GGRSYGGGRGGGGGGYGGGGGYGGGGGYGGGGGYG 404
>TC219729 weakly similar to UP|Q8L685 (Q8L685) Pherophorin-dz1 protein
precursor, partial (7%)
Length = 785
Score = 35.0 bits (79), Expect = 0.035
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = -2
Query: 196 GGDSGDGGNNGGGSGHGDKGDGGDEDDSDNGSDSGAL 232
GGD G+GG GG G G G GG G G+L
Sbjct: 265 GGDGGNGGGGDGGIGGGGDGGGGHSIGLGGGGGGGSL 155
Score = 33.5 bits (75), Expect = 0.10
Identities = 17/38 (44%), Positives = 19/38 (49%), Gaps = 1/38 (2%)
Frame = -2
Query: 194 VVGGDSGDGGNNGGGSGH-GDKGDGGDEDDSDNGSDSG 230
++ G GDGGN GGG G G GDGG G G
Sbjct: 280 LITGGGGDGGNGGGGDGGIGGGGDGGGGHSIGLGGGGG 167
Score = 29.6 bits (65), Expect = 1.5
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Frame = -2
Query: 197 GDSGDGGNNGGGSGH---GDKGDGGDEDDSDNGSDSG 230
G G G+ GG GH G GDGG+ D G G
Sbjct: 325 GGGGGSGSGFGGGGHLITGGGGDGGNGGGGDGGIGGG 215
>TC204724 similar to UP|Q9AXQ2 (Q9AXQ2) Mitochondrial processing peptidase
beta subunit, partial (92%)
Length = 1868
Score = 34.3 bits (77), Expect = 0.059
Identities = 16/36 (44%), Positives = 16/36 (44%)
Frame = -1
Query: 196 GGDSGDGGNNGGGSGHGDKGDGGDEDDSDNGSDSGA 231
GG GG GGG GHG G G E G GA
Sbjct: 197 GGGGKRGGRGGGGGGHGGGGGEGSEGGEGGGPPVGA 90
>TC219649 weakly similar to UP|Q95JD1 (Q95JD1) Basic proline-rich protein,
partial (37%)
Length = 750
Score = 33.9 bits (76), Expect = 0.077
Identities = 18/35 (51%), Positives = 18/35 (51%)
Frame = -1
Query: 196 GGDSGDGGNNGGGSGHGDKGDGGDEDDSDNGSDSG 230
GG GD G GGG G G G GG E S G SG
Sbjct: 483 GGPGGDAGPGGGGPG-GGAGPGGGEPGSGAGPGSG 382
Score = 32.0 bits (71), Expect = 0.29
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = -1
Query: 197 GDSGDGGNNGGGSGHGDKGDGGDEDDSDNGSDSGA 231
G G GG GGG G G G GG G SGA
Sbjct: 390 GSGGYGGGPGGGVGPGGGGPGGGAGRGGGGPGSGA 286
Score = 32.0 bits (71), Expect = 0.29
Identities = 19/46 (41%), Positives = 20/46 (43%), Gaps = 11/46 (23%)
Frame = -1
Query: 196 GGDSGDGGNNGGGSG-----------HGDKGDGGDEDDSDNGSDSG 230
GGD+G GG GGS GD G GG E S G SG
Sbjct: 630 GGDAGPGGGGPGGSAGPGSGGYGGGPGGDTGPGGGEPGSGAGPGSG 493
Score = 30.0 bits (66), Expect = 1.1
Identities = 16/35 (45%), Positives = 17/35 (47%)
Frame = -1
Query: 196 GGDSGDGGNNGGGSGHGDKGDGGDEDDSDNGSDSG 230
GG GG+ GGG G GD G GG G SG
Sbjct: 672 GGAGSGGGSYGGGPG-GDAGPGGGGPGGSAGPGSG 571
Score = 29.6 bits (65), Expect = 1.5
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = -1
Query: 195 VGGDSGDGGNNGGGSGHGDKGDGGDEDDSDNGSDSG 230
VGG G G G GSG G G G D G G
Sbjct: 702 VGGGYGGGPGGGAGSGGGSYGGGPGGDAGPGGGGPG 595
Score = 29.6 bits (65), Expect = 1.5
Identities = 17/41 (41%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Frame = -1
Query: 196 GGDSGDGGNNGG-----GSGHGDKGDGGDEDDSDNGSDSGA 231
GGD+G GG G GSG G GGD G GA
Sbjct: 552 GGDTGPGGGEPGSGAGPGSGGYGGGPGGDAGPGGGGPGGGA 430
Score = 28.9 bits (63), Expect = 2.5
Identities = 15/35 (42%), Positives = 16/35 (44%)
Frame = -1
Query: 196 GGDSGDGGNNGGGSGHGDKGDGGDEDDSDNGSDSG 230
GG GD G GGG G G G G G D+G
Sbjct: 639 GGPGGDAGPGGGGPG-GSAGPGSGGYGGGPGGDTG 538
Score = 26.9 bits (58), Expect = 9.4
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = -1
Query: 196 GGDSGDGGNNGGGSGHGDKGDGGDEDDSDNG 226
GG GDG GGG G G DGG D G
Sbjct: 231 GGPGGDG--YGGGPGGGAGPDGGGPKDGGFG 145
>BU764155 weakly similar to GP|6523547|emb| hydroxyproline-rich glycoprotein
DZ-HRGP {Volvox carteri f. nagariensis}, partial (11%)
Length = 434
Score = 33.9 bits (76), Expect = 0.077
Identities = 14/31 (45%), Positives = 18/31 (57%)
Frame = -3
Query: 196 GGDSGDGGNNGGGSGHGDKGDGGDEDDSDNG 226
GG++GDG + GG GD G GD D+ G
Sbjct: 159 GGNNGDGDTDTGGRSDGDTGRDGDTGDTGGG 67
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.321 0.137 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,076,929
Number of Sequences: 63676
Number of extensions: 222107
Number of successful extensions: 4610
Number of sequences better than 10.0: 297
Number of HSP's better than 10.0 without gapping: 3297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4279
length of query: 262
length of database: 12,639,632
effective HSP length: 95
effective length of query: 167
effective length of database: 6,590,412
effective search space: 1100598804
effective search space used: 1100598804
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0008.6