BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0008.15
(375 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC232742 weakly similar to PIR|G86367|G86367 protein F28C11.3 [i... 300 5e-82
TC222385 weakly similar to PIR|G86367|G86367 protein F28C11.3 [i... 186 2e-47
TC211029 similar to UP|Q96VI4 (Q96VI4) Protease 1, partial (3%) 52 3e-07
TC228959 homologue to GB|AAS99683.1|46518403|BT012539 At5g15710 ... 35 0.042
TC229198 32 0.36
TC208758 similar to UP|Q8L736 (Q8L736) Predicted protein, partia... 32 0.61
TC229125 weakly similar to GB|AAC13686.1|3047308|AF056929 sarcos... 32 0.61
TC226576 similar to UP|Q8L736 (Q8L736) Predicted protein, partia... 30 1.4
TC224876 weakly similar to UP|Q39835 (Q39835) Extensin, partial ... 30 1.4
AW596139 weakly similar to GP|18086559|gb| At2g24540/F25P17.16 {... 30 1.8
TC226147 weakly similar to UP|Q9LZW5 (Q9LZW5) Serine/threonine p... 30 1.8
CD404585 weakly similar to GP|1022809|gb|A OR23peptide {Arabidop... 30 1.8
TC205038 similar to UP|Q94II3 (Q94II3) ERD3 protein, partial (48%) 30 1.8
TC208333 weakly similar to GB|AAC13686.1|3047308|AF056929 sarcos... 30 1.8
TC227645 similar to UP|Q9FZK1 (Q9FZK1) F17L21.13, partial (61%) 29 3.0
TC215141 similar to GB|AAL32703.1|17065098|AY062625 nucleotide s... 29 3.0
TC225140 UP|TCTP_SOYBN (Q944T2) Translationally controlled tumor... 29 3.9
TC227618 similar to UP|Q9FKJ0 (Q9FKJ0) Emb|CAB55405.1, partial (... 28 5.2
TC208582 weakly similar to UP|Q9SI74 (Q9SI74) F23N19.12, partial... 28 6.7
TC211664 28 6.7
>TC232742 weakly similar to PIR|G86367|G86367 protein F28C11.3 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(19%)
Length = 838
Score = 300 bits (769), Expect = 5e-82
Identities = 154/236 (65%), Positives = 189/236 (79%), Gaps = 3/236 (1%)
Frame = +2
Query: 135 PRVWRTDPIVARVGQRVVVAGGACDFEDDPLAVEMYDMESNTWVMCQSMPAMLKGSSGST 194
PRVWRTDP+VARVG VVVAGGAC+FEDDPLAVEMYD++S +W C SMPA+LKGS+ S+
Sbjct: 2 PRVWRTDPVVARVGTCVVVAGGACEFEDDPLAVEMYDLKSQSWEACPSMPALLKGSTASS 181
Query: 195 WLSVAVAGEEVLVTEESSGMTFCFDTVSMKWDGPYDLCPDQSVGYCVTGMLGKRLMVAGV 254
WLSVA+AGE + VTE+ SG+T+ FDTVS W GP++L P +SV +CVTG LG+RLMVAGV
Sbjct: 182 WLSVAIAGEIMHVTEKHSGVTYSFDTVSKTWKGPFNLRPHESVFHCVTGTLGERLMVAGV 361
Query: 255 VGDGEDVKAVKLWAVKGGLGSGMTEEVGEMPEELLEKFKGDSDELGSLEVTWVGNFVYLR 314
V + +VK VKLW V+ +GSGM EEVGEMP+E++ K S EL S+EVTW+G+FVY+R
Sbjct: 362 VWEVGNVKGVKLWEVR--VGSGM-EEVGEMPKEMVRKLFSGS-ELDSVEVTWIGDFVYVR 529
Query: 315 NTLEIEELVMCEV---VNGSRCEWRSVRNAAVDGGTRMVVCGSEVRLEDLQSAMVS 367
NT E EELV+CEV +NG CEWRSVRNAAV G RM+ CG +V LEDLQ A++S
Sbjct: 530 NTFEPEELVLCEVLNHLNGVGCEWRSVRNAAVRCGARMLFCGGDVCLEDLQRAVMS 697
>TC222385 weakly similar to PIR|G86367|G86367 protein F28C11.3 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(9%)
Length = 364
Score = 186 bits (471), Expect = 2e-47
Identities = 88/125 (70%), Positives = 101/125 (80%)
Frame = +2
Query: 9 EEAPIHGDVLETILSHVPLIHLVPACHVSNTWKHAVFSSLAHTRTIKPWLIILTQSTRAS 68
++APIHGD+LE I SHVPLIHLVPA HVSN+WK AV SSLAH R IKPWLI+LTQS RAS
Sbjct: 5 KKAPIHGDILEAIFSHVPLIHLVPASHVSNSWKRAVSSSLAHVRPIKPWLIVLTQSLRAS 184
Query: 69 HVITAHAYDPRSHVWVEMKLPHPLKGHPSATAAVRSSHSTLLYTLSPAEFAFSIDALHLD 128
HV T HAYDPRSHVW+++ T+ VRSSHSTL YTL+P+EFAFS+DALHL+
Sbjct: 185 HVTTLHAYDPRSHVWLQIN-----NSKYCHTSPVRSSHSTLFYTLTPSEFAFSLDALHLN 349
Query: 129 WHHAP 133
WHHAP
Sbjct: 350 WHHAP 364
>TC211029 similar to UP|Q96VI4 (Q96VI4) Protease 1, partial (3%)
Length = 858
Score = 52.4 bits (124), Expect = 3e-07
Identities = 55/229 (24%), Positives = 85/229 (37%), Gaps = 19/229 (8%)
Frame = +3
Query: 16 DVLETILSHVPLIHLVPACHVSNTWKHAVFSSLAHTRTI---KPWLIILTQSTRASHVIT 72
D++E ILS +P+ L+ A V W + SS T + +PW + +S
Sbjct: 168 DLIELILSLLPIPTLIRASTVCKLWHSIISSSSFSTLSNHLNQPWFFLHGIHNISSKNNQ 347
Query: 73 AHAYDPRSHVWVEMKLPHPLKGHPSATAAVRSSHSTLLYTLSPAEFAFSIDALHLDWHHA 132
+ A+DP S+ W + P H + S T + A LH WH
Sbjct: 348 SFAFDPASNTWFLLPTPQHHHQHQHQYQSNTSFIGTNSFFFITAPNFLYTPILHPSWHPT 527
Query: 133 PAPRVWRTDPIVARVGQ----------RVVVAGGA------CDFEDDPLAVEMYDMESNT 176
P R +P++ + +V GG D E D L VE+YD +
Sbjct: 528 PPLHFPRINPLLGVFHDAKDQNFGHHPKFIVVGGVKFIGNLVDIE-DRLDVEIYDPLVGS 704
Query: 177 WVMCQSMPAMLKGSSGSTWLSVAVAGEEVLVTEESSGMTFCFDTVSMKW 225
W + +P + + S+ LS A+ + V S FD W
Sbjct: 705 WELGPPLPPDFRSGNSSSSLSSALFRGKFYVFGIYSCFVSSFDLHKRVW 851
>TC228959 homologue to GB|AAS99683.1|46518403|BT012539 At5g15710 {Arabidopsis
thaliana;} , partial (59%)
Length = 1137
Score = 35.4 bits (80), Expect = 0.042
Identities = 39/149 (26%), Positives = 62/149 (41%), Gaps = 14/149 (9%)
Frame = +2
Query: 133 PAPRVWRTDP------------IVARVGQRVVVAGGACDFEDDPLAVEMYDMESNTWVMC 180
P + WR P +V RV Q V + + D L E+YD ++++W +
Sbjct: 113 PLTQTWRALPSMHYNQQRQLVLVVDRVDQSFKVIATSDIYGDKSLPTEVYDSKTDSWTVH 292
Query: 181 QSMPAMLKGSSGSTWLSVAVAGEEVLVTEESSG-MTFCFDTVSMKWDG-PYDLCPDQSVG 238
Q MPA+ SS + + L T G M + DT W+ P G
Sbjct: 293 QIMPAVNLCSSKMAYCDSRL----YLETLSPLGLMMYRLDT--GHWEHIPAKFPRSLLDG 454
Query: 239 YCVTGMLGKRLMVAGVVGDGEDVKAVKLW 267
Y V G KRL + G +G ++++++W
Sbjct: 455 YLVAG-TQKRLFLVGRIGLYSTLQSMRIW 538
>TC229198
Length = 920
Score = 32.3 bits (72), Expect = 0.36
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = +2
Query: 202 GEEVLVTEESSGMTFCFDTVSMKWDGPYDLCPDQSVGYCV 241
GE++LV SSG C T S + +GPY + P+++V Y V
Sbjct: 653 GEQMLV---SSGQLACIATKSCRLEGPYIIIPNKTVQYQV 763
>TC208758 similar to UP|Q8L736 (Q8L736) Predicted protein, partial (52%)
Length = 797
Score = 31.6 bits (70), Expect = 0.61
Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 11/129 (8%)
Frame = +2
Query: 75 AYDPRSHVWVEMKLPHPLKGHPSATAAVRSSHSTLLY----------TLSPAEFAFSIDA 124
A+DP + W M+LP PS + S +L +SP + +SI
Sbjct: 134 AFDPNTRRW--MRLPRM----PSNECFICSDKESLAVGTELLVFGKEIMSPVIYRYSI-- 289
Query: 125 LHLDWHHAPAPRVWRTDPIVARVGQRVVVAGGACDFEDDPLA-VEMYDMESNTWVMCQSM 183
L W + R A +G+ ++AGG CD + L+ E+Y+ E+ TW + +M
Sbjct: 290 LMNAWSSGMEMNIPRCLFGSASLGEIAILAGG-CDPRGNILSSAELYNSETGTWELLPNM 466
Query: 184 PAMLKGSSG 192
K SG
Sbjct: 467 NKARKMCSG 493
>TC229125 weakly similar to GB|AAC13686.1|3047308|AF056929 sarcosin {Homo
sapiens;} , partial (4%)
Length = 1454
Score = 31.6 bits (70), Expect = 0.61
Identities = 41/170 (24%), Positives = 65/170 (38%), Gaps = 20/170 (11%)
Frame = +2
Query: 76 YDPRSHVWVEMK-LPHPLKGHPSATAAVRSSHSTLLYTLSPAEFAFSIDALHLD------ 128
YDP +W+ + LP ++ H S AV ++ L+ + A +D L D
Sbjct: 386 YDPMRDLWITLPVLPSKIR-HLSNLGAVSTAGK--LFEIGGGSDA--VDPLTGDQDGCFA 550
Query: 129 ----WHHAPAPRVW--RTDPIVAR-------VGQRVVVAGGACDFEDDPLAVEMYDMESN 175
W + P R W R +V R + ++VVAGG EMYD + +
Sbjct: 551 TDEVWSYDPVAREWASRASMLVPRSMFACCVLNGKIVVAGGFTSCRKSISQSEMYDPDKD 730
Query: 176 TWVMCQSMPAMLKGSSGSTWLSVAVAGEEVLVTEESSGMTFCFDTVSMKW 225
W+ MP + + + + S V G +V V + D W
Sbjct: 731 IWI---PMPDLHRTHNSA--CSGVVIGGKVHVLHKDLSTVQVLDNAGPGW 865
>TC226576 similar to UP|Q8L736 (Q8L736) Predicted protein, partial (73%)
Length = 1811
Score = 30.4 bits (67), Expect = 1.4
Identities = 17/49 (34%), Positives = 28/49 (56%), Gaps = 1/49 (2%)
Frame = +3
Query: 145 ARVGQRVVVAGGACDFEDDPL-AVEMYDMESNTWVMCQSMPAMLKGSSG 192
A +G+ ++AGG CD + + + E+Y+ E+ TW + SM K SG
Sbjct: 426 ASLGEIAILAGG-CDLDGHIMDSAELYNSENQTWELLPSMNKPRKMCSG 569
>TC224876 weakly similar to UP|Q39835 (Q39835) Extensin, partial (66%)
Length = 1340
Score = 30.4 bits (67), Expect = 1.4
Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 20/122 (16%)
Frame = +2
Query: 17 VLETILSHVPLIHLVPACHVSNTWKHAVFSSLAHTR-TIKPWLIILTQSTRASHVITAHA 75
++ T+L H+ +HL H++ T H + +HT T+ L +L Q + ++ H
Sbjct: 275 IIITLLLHLLPLHL--RSHITTTRHHHLHQRRSHTTITLHHHLHLLHQRNHITTILLHHL 448
Query: 76 Y--DPRSHVWV-----------------EMKLPHPLKGHPSATAAVRSSHSTLLYTLSPA 116
+ RSH + LPHPL+ H T+ H L TL P
Sbjct: 449 HLLHQRSHTTTIPHPHHHLLHLTRSHTTTIPLPHPLRSH---TSTHHLHHQYTLLTL-PT 616
Query: 117 EF 118
+F
Sbjct: 617 QF 622
>AW596139 weakly similar to GP|18086559|gb| At2g24540/F25P17.16 {Arabidopsis
thaliana}, partial (22%)
Length = 411
Score = 30.0 bits (66), Expect = 1.8
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Frame = +1
Query: 16 DVLETILSHVPLIHLVPACHVSNTWKHAVF--SSLAHTRTI-KPWLIILTQSTRASHVIT 72
++ E L HVP + + VS+TW A+ S + +T+ +P L +L ++ I
Sbjct: 52 EIAELCLLHVPYPYQALSRSVSSTWNRAITHPSFIFSKKTLSRPHLFVLAFHSQTGK-IQ 228
Query: 73 AHAYDPRSHVW-VEMKLPHPLKGHPSATAAVRSSHSTLLYTLS 114
A DP S W V ++P P+ A H L+ ++
Sbjct: 229 WQALDPSSGRWFVLPQMPLQENSCPTEFACAALPHQGKLFVMA 357
>TC226147 weakly similar to UP|Q9LZW5 (Q9LZW5) Serine/threonine protein
kinase ATPK10 , partial (55%)
Length = 1439
Score = 30.0 bits (66), Expect = 1.8
Identities = 23/93 (24%), Positives = 35/93 (36%), Gaps = 7/93 (7%)
Frame = +1
Query: 142 PIVARVGQRVVVAGGACDFEDDPLAVEMYDMESNTWVMCQSMPAMLKGSSGSTWLSVAVA 201
PI V + ++ AC+ E + S TW + + + LKG S S W+S
Sbjct: 49 PIFGLVPHLLPLSSAACNHERFSTPPNAF---SRTWCVLSTPSSSLKGLSPSIWVSPTST 219
Query: 202 GEEVLVTEESSGMT-------FCFDTVSMKWDG 227
T E+ + F T + KW G
Sbjct: 220 NSNSYPTIETKSLVHLTHIAIFIHHTPASKWTG 318
>CD404585 weakly similar to GP|1022809|gb|A OR23peptide {Arabidopsis
thaliana}, partial (17%)
Length = 695
Score = 30.0 bits (66), Expect = 1.8
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = -3
Query: 146 RVGQRVVVAGGACD--FEDDPLAVEMYDMESNTWVMCQSMPAMLKGSSGSTWLSVAVAGE 203
RVG+ VVV C F D + YDM SN W+ +P K S++ V + GE
Sbjct: 654 RVGKIVVVDDNGCPMLFMLDANEILRYDMSSNRWLYESRVPR--KAPYNSSFGVVVLDGE 481
Query: 204 EVLVT 208
+VT
Sbjct: 480 LYVVT 466
>TC205038 similar to UP|Q94II3 (Q94II3) ERD3 protein, partial (48%)
Length = 889
Score = 30.0 bits (66), Expect = 1.8
Identities = 14/39 (35%), Positives = 18/39 (45%)
Frame = +3
Query: 114 SPAEFAFSIDALHLDWHHAPAPRVWRTDPIVARVGQRVV 152
S FS+ LH D+H AP +W P GQ +V
Sbjct: 438 SVVSLQFSVSFLHRDFHSHQAPLIWLIAPDALSHGQNMV 554
>TC208333 weakly similar to GB|AAC13686.1|3047308|AF056929 sarcosin {Homo
sapiens;} , partial (6%)
Length = 909
Score = 30.0 bits (66), Expect = 1.8
Identities = 18/59 (30%), Positives = 25/59 (41%), Gaps = 9/59 (15%)
Frame = +3
Query: 129 WHHAPAPRVW--RTDPIVAR-------VGQRVVVAGGACDFEDDPLAVEMYDMESNTWV 178
W + P R W R +V R + ++VVAGG EMYD E + W+
Sbjct: 24 WSYDPVVRQWSPRAAMLVPRSMFACCVMNGKIVVAGGFTSCRKSISQAEMYDPEKDVWI 200
>TC227645 similar to UP|Q9FZK1 (Q9FZK1) F17L21.13, partial (61%)
Length = 1671
Score = 29.3 bits (64), Expect = 3.0
Identities = 52/221 (23%), Positives = 79/221 (35%), Gaps = 13/221 (5%)
Frame = +3
Query: 147 VGQRVVVAGGACDFEDDPLAVEMYDMESNTWVMCQSMPAMLKGSSGSTWLSVAVA-GEEV 205
VG + CD E E+YD N+W +MPA +K + S AV+ G +
Sbjct: 783 VGSGYKILWVGCDGE-----YEVYDSVRNSWSRPGNMPAGMKLPLSINFRSQAVSIGSTL 947
Query: 206 LVTEESSGMTFCFDTVSMKW-----DGPYDLCPDQSVGYC-----VTGMLGKRLMVAGVV 255
+D + W P L D ++ C + G+L K A V
Sbjct: 948 YFMRSDPDGIVSYDMATGVWKQYIIPAPLHL-TDHTLAECDGQIMLVGLLTKN--AATCV 1118
Query: 256 GDGEDVKAVKLWAVKGGLGSGMTEEVGEMPEELLEKFKGDSDELGSLEVTWVGNFVYLRN 315
E K LW +EV MP F G + +T +GN L
Sbjct: 1119CIWELQKMTLLW-----------KEVDRMPNIWCLDFYGK-----HVRMTCLGNKGLLML 1250
Query: 316 TLEIEELVMCEVVNGSRCEWRSVRNAAVDGGTR--MVVCGS 354
+L +++ N ++ EW V V G + + CG+
Sbjct: 1251SLRSKQMNRLVTYNIAKKEWLKVPGCVVPRGRKRQWIACGT 1373
>TC215141 similar to GB|AAL32703.1|17065098|AY062625 nucleotide sugar
epimerase-like protein {Arabidopsis thaliana;} , partial
(89%)
Length = 1743
Score = 29.3 bits (64), Expect = 3.0
Identities = 24/78 (30%), Positives = 36/78 (45%), Gaps = 9/78 (11%)
Frame = -1
Query: 235 QSVGYCVTGMLGKRLMVAGVVGDGEDVKAVKLWAVKGGLGSGMTEEV-GEMPEE------ 287
++VG G + L+ G GE+V V + GG+G G V GE +E
Sbjct: 312 EAVGAAGGGGVADLLLPGAEGGGGEEVVGVGVEVAVGGVGGGEGRVVEGEEEDEDECDQE 133
Query: 288 --LLEKFKGDSDELGSLE 303
E+F G +ELG++E
Sbjct: 132 SGAEEEFGGGVEELGAVE 79
>TC225140 UP|TCTP_SOYBN (Q944T2) Translationally controlled tumor protein
homolog (TCTP), complete
Length = 1405
Score = 28.9 bits (63), Expect = 3.9
Identities = 16/48 (33%), Positives = 25/48 (51%)
Frame = -3
Query: 202 GEEVLVTEESSGMTFCFDTVSMKWDGPYDLCPDQSVGYCVTGMLGKRL 249
GE++LV SSG C T S + +GPY + P++ +L R+
Sbjct: 161 GEQMLV---SSGQLACIATKSCRLEGPYIIIPNKPFNTKCNSLLSGRV 27
>TC227618 similar to UP|Q9FKJ0 (Q9FKJ0) Emb|CAB55405.1, partial (73%)
Length = 1190
Score = 28.5 bits (62), Expect = 5.2
Identities = 14/46 (30%), Positives = 24/46 (51%)
Frame = +2
Query: 147 VGQRVVVAGGACDFEDDPLAVEMYDMESNTWVMCQSMPAMLKGSSG 192
+G +VAGG+ + + + E+YD S TW + +M + SG
Sbjct: 266 LGSIAIVAGGSDKYGNVLESAELYDSNSGTWKLLPNMHTPRRLCSG 403
>TC208582 weakly similar to UP|Q9SI74 (Q9SI74) F23N19.12, partial (17%)
Length = 983
Score = 28.1 bits (61), Expect = 6.7
Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
Frame = -1
Query: 34 CHVSNTWKHAVFSSLAHTRTIKPWLIILTQSTRASHVITAHAYDPRSHVWVE-MKLPHPL 92
CH+ N H V S H IKP L R +H Y + + ++PH +
Sbjct: 692 CHIQNNLSHFVRQSGIHVHLIKPI*ASLIIGNRGTHPC---LYVANLKLSINTTQIPHGI 522
Query: 93 KGHPSATAAVRSSHSTLLYTL 113
KG T + T+L+ L
Sbjct: 521 KGIFEFTNGILHIAKTILHHL 459
>TC211664
Length = 577
Score = 28.1 bits (61), Expect = 6.7
Identities = 14/43 (32%), Positives = 19/43 (43%)
Frame = +1
Query: 177 WVMCQSMPAMLKGSSGSTWLSVAVAGEEVLVTEESSGMTFCFD 219
W MC++ P +L GS W S + G+TF FD
Sbjct: 127 WSMCRTSPELLLNPCGSAWYSSIM----------ELGLTFTFD 225
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.319 0.133 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,385,256
Number of Sequences: 63676
Number of extensions: 288343
Number of successful extensions: 1528
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 1508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1523
length of query: 375
length of database: 12,639,632
effective HSP length: 99
effective length of query: 276
effective length of database: 6,335,708
effective search space: 1748655408
effective search space used: 1748655408
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0008.15