BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0008.10
(155 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC203970 homologue to UP|Q6UCJ3 (Q6UCJ3) Ubiquitin extension pro... 312 5e-86
TC203966 homologue to UP|Q6UCJ3 (Q6UCJ3) Ubiquitin extension pro... 311 1e-85
TC203967 homologue to UP|Q6UCJ3 (Q6UCJ3) Ubiquitin extension pro... 311 1e-85
TC203971 homologue to UP|Q6UCJ3 (Q6UCJ3) Ubiquitin extension pro... 308 5e-85
BF596375 similar to PIR|S40239|S40 ubiquitin/ribosomal protein S... 245 5e-66
BF010315 similar to PIR|S40240|S40 ubiquitin/ribosomal protein S... 241 1e-64
TC204000 homologue to UP|Q84XC3 (Q84XC3) Ubiquitin/ribosomal fus... 177 4e-53
BG239001 similar to PIR|T52334|T52 ubiquitin extension protein [... 201 1e-52
BE021410 similar to GP|28395459|gb ubiquitin/ribosomal fusion pr... 182 6e-47
BG238635 homologue to GP|10180023|gb| ubiquitin/ribosomal protei... 103 1e-41
TC225521 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin ... 152 8e-38
TC214459 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin ... 152 8e-38
CA851404 GP|15982787|g AT4g05320/C17L7_240 {Arabidopsis thaliana... 152 8e-38
TC214599 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin ... 151 1e-37
TC203502 homologue to UP|Q8LPV5 (Q8LPV5) Polyubiquitin 2, complete 150 2e-37
TC203381 homologue to UP|Q8LPV5 (Q8LPV5) Polyubiquitin 2, complete 150 2e-37
TC214607 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin ... 150 2e-37
TC224828 UP|Q9AR09 (Q9AR09) Ubiquitin fused to ribosomal protein... 150 2e-37
TC203465 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin ... 150 2e-37
TC203571 UP|Q41067 (Q41067) Polyubiquitin, partial (29%) 150 2e-37
>TC203970 homologue to UP|Q6UCJ3 (Q6UCJ3) Ubiquitin extension protein,
partial (98%)
Length = 748
Score = 312 bits (799), Expect = 5e-86
Identities = 152/155 (98%), Positives = 154/155 (99%)
Frame = +1
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 64 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 243
Query: 61 IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHRKVKLAVLQFYKVDDSGKVQRLRKE 120
IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKH+KVKLA+LQFYKVDDSGKVQRLRKE
Sbjct: 244 IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLALLQFYKVDDSGKVQRLRKE 423
Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKAAA 155
CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKA A
Sbjct: 424 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKAEA 528
>TC203966 homologue to UP|Q6UCJ3 (Q6UCJ3) Ubiquitin extension protein,
partial (98%)
Length = 715
Score = 311 bits (796), Expect = 1e-85
Identities = 151/155 (97%), Positives = 153/155 (98%)
Frame = +2
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 125 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 304
Query: 61 IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHRKVKLAVLQFYKVDDSGKVQRLRKE 120
IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKH+KVKL +LQFYKVDDSGKVQRLRKE
Sbjct: 305 IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLGILQFYKVDDSGKVQRLRKE 484
Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKAAA 155
CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKA A
Sbjct: 485 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKADA 589
>TC203967 homologue to UP|Q6UCJ3 (Q6UCJ3) Ubiquitin extension protein,
partial (98%)
Length = 746
Score = 311 bits (796), Expect = 1e-85
Identities = 151/155 (97%), Positives = 153/155 (98%)
Frame = +3
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 69 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 248
Query: 61 IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHRKVKLAVLQFYKVDDSGKVQRLRKE 120
IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKH+KVKL +LQFYKVDDSGKVQRLRKE
Sbjct: 249 IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLGILQFYKVDDSGKVQRLRKE 428
Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKAAA 155
CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKA A
Sbjct: 429 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKADA 533
>TC203971 homologue to UP|Q6UCJ3 (Q6UCJ3) Ubiquitin extension protein,
partial (97%)
Length = 627
Score = 308 bits (790), Expect = 5e-85
Identities = 149/153 (97%), Positives = 153/153 (99%)
Frame = +1
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 34 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 213
Query: 61 IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHRKVKLAVLQFYKVDDSGKVQRLRKE 120
IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKH+KVKLA+LQFYKVDDSGK+QRLRKE
Sbjct: 214 IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLALLQFYKVDDSGKLQRLRKE 393
Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKA 153
CPNAECGAGTFMANHFDRHYCGKCGLTYVYQK+
Sbjct: 394 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKS 492
>BF596375 similar to PIR|S40239|S40 ubiquitin/ribosomal protein S27a fusion
protein - white lupine, partial (90%)
Length = 424
Score = 245 bits (626), Expect = 5e-66
Identities = 122/141 (86%), Positives = 126/141 (88%)
Frame = +2
Query: 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 61
QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP D RLIFAGKQ+EDGRTLADY I
Sbjct: 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPSDHHRLIFAGKQMEDGRTLADYYI 181
Query: 62 QKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHRKVKLAVLQFYKVDDSGKVQRLRKEC 121
QKESTL+LVLRLRGGAK RKKKTYTKP KIKHKH KVKL +L FY VDDSG VQRLR EC
Sbjct: 182 QKESTLNLVLRLRGGAKMRKKKTYTKPNKIKHKH*KVKLGILHFYMVDDSGNVQRLR*EC 361
Query: 122 PNAECGAGTFMANHFDRHYCG 142
PN ECGA TFMA+HFD HYCG
Sbjct: 362 PNVECGACTFMAHHFDLHYCG 424
>BF010315 similar to PIR|S40240|S40 ubiquitin/ribosomal protein S27a fusion
protein - white lupine, partial (92%)
Length = 463
Score = 241 bits (614), Expect = 1e-64
Identities = 124/154 (80%), Positives = 129/154 (83%), Gaps = 2/154 (1%)
Frame = +2
Query: 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR--TLADY 59
QIFVKTLTGKTIT EVESSDTI+NVKA IQD E IPPDQ RLIF ++ GR TL DY
Sbjct: 2 QIFVKTLTGKTIT*EVESSDTINNVKANIQDMERIPPDQHRLIF-DRKATGGRACTLGDY 178
Query: 60 NIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHRKVKLAVLQFYKVDDSGKVQRLRK 119
NIQKE TLHLVLRLRGGAKKRKKKTYT PKKIKH H+KV L +LQFYKV DSGKVQ L K
Sbjct: 179 NIQKECTLHLVLRLRGGAKKRKKKTYTMPKKIKHNHKKVTLGILQFYKVYDSGKVQMLSK 358
Query: 120 ECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKA 153
ECPNAECGA TFM NHFDRHYC CGLTYVYQKA
Sbjct: 359 ECPNAECGACTFMGNHFDRHYCR*CGLTYVYQKA 460
>TC204000 homologue to UP|Q84XC3 (Q84XC3) Ubiquitin/ribosomal fusion protein,
partial (56%)
Length = 1061
Score = 177 bits (450), Expect(2) = 4e-53
Identities = 81/94 (86%), Positives = 88/94 (93%)
Frame = +1
Query: 62 QKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHRKVKLAVLQFYKVDDSGKVQRLRKEC 121
++ T+HLVLR+RGGAK+RKKKT TKPKKIKHKH+KVKL +LQFYKVDDSGKVQRLRKEC
Sbjct: 124 RRSVTVHLVLRIRGGAKQRKKKTXTKPKKIKHKHKKVKLGILQFYKVDDSGKVQRLRKEC 303
Query: 122 PNAECGAGTFMANHFDRHYCGKCGLTYVYQKAAA 155
P AECGAGTFMANHFDRHYCGKCGLTYVYQKA A
Sbjct: 304 PTAECGAGTFMANHFDRHYCGKCGLTYVYQKADA 405
Score = 46.6 bits (109), Expect(2) = 4e-53
Identities = 24/43 (55%), Positives = 27/43 (61%)
Frame = +3
Query: 22 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE 64
T+ +VK IQ KEGIP QR+ KQLE GR YNIQKE
Sbjct: 3 TMXHVKXTIQHKEGIPTXXQRIXXTRKQLEYGRHXTXYNIQKE 131
>BG239001 similar to PIR|T52334|T52 ubiquitin extension protein [imported] -
potato, partial (80%)
Length = 379
Score = 201 bits (511), Expect = 1e-52
Identities = 98/126 (77%), Positives = 109/126 (85%)
Frame = -1
Query: 28 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTK 87
AK D+EGI DQQRLIFAGKQLEDGRTL D+NIQKESTLHLVLR RGGAKK KKKTY +
Sbjct: 379 AKFPDQEGILSDQQRLIFAGKQLEDGRTLVDFNIQKESTLHLVLRFRGGAKKGKKKTYPQ 200
Query: 88 PKKIKHKHRKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLT 147
P+KI+ + +KV++ + QFYKVDD GKVQRLRKECPNAECGAGTF A+ FDRH GKCGLT
Sbjct: 199 PQKIQPQPKKVQVGIFQFYKVDDFGKVQRLRKECPNAECGAGTFKAHPFDRH*FGKCGLT 20
Query: 148 YVYQKA 153
YVYQKA
Sbjct: 19 YVYQKA 2
>BE021410 similar to GP|28395459|gb ubiquitin/ribosomal fusion protein {Malus
x domestica}, partial (83%)
Length = 394
Score = 182 bits (462), Expect = 6e-47
Identities = 97/131 (74%), Positives = 103/131 (78%)
Frame = +2
Query: 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 61
QIF+KTLTG TIT EVESSDTID VKA+I DKE IP DQ RLIF GK L D RTLADYN
Sbjct: 2 QIFLKTLTG*TITSEVESSDTIDIVKARIHDKERIPTDQPRLIFFGKPL*DRRTLADYNF 181
Query: 62 QKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHRKVKLAVLQFYKVDDSGKVQRLRKEC 121
KESTL LVLRL G A R+ TYT PK IK KH+KVKL +LQFYKVD SG VQRL KEC
Sbjct: 182 HKESTLDLVLRLLGCANNRRMNTYTMPKMIKLKHKKVKLGILQFYKVDYSG*VQRLLKEC 361
Query: 122 PNAECGAGTFM 132
PN+ECGAGT M
Sbjct: 362 PNSECGAGTLM 394
>BG238635 homologue to GP|10180023|gb| ubiquitin/ribosomal protein 27a
{Prunus avium}, partial (58%)
Length = 484
Score = 103 bits (258), Expect(2) = 1e-41
Identities = 51/52 (98%), Positives = 51/52 (98%)
Frame = +1
Query: 41 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIK 92
QR IFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIK
Sbjct: 328 QRFIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIK 483
Score = 82.0 bits (201), Expect(2) = 1e-41
Identities = 41/43 (95%), Positives = 41/43 (95%)
Frame = +3
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 43
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ L
Sbjct: 207 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQPAL 335
>TC225521 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (81%)
Length = 1405
Score = 152 bits (383), Expect = 8e-38
Identities = 80/93 (86%), Positives = 82/93 (88%)
Frame = +2
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 725 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 904
Query: 61 IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKH 93
IQKESTLHLVLRLRGG R PK +K+
Sbjct: 905 IQKESTLHLVLRLRGGF*ARCVMLDVFPKHLKN 1003
Score = 150 bits (379), Expect = 2e-37
Identities = 76/76 (100%), Positives = 76/76 (100%)
Frame = +2
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 497 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 676
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 677 IQKESTLHLVLRLRGG 724
Score = 150 bits (379), Expect = 2e-37
Identities = 76/76 (100%), Positives = 76/76 (100%)
Frame = +2
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 269 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 448
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 449 IQKESTLHLVLRLRGG 496
Score = 150 bits (379), Expect = 2e-37
Identities = 76/76 (100%), Positives = 76/76 (100%)
Frame = +2
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 41 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 220
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 221 IQKESTLHLVLRLRGG 268
>TC214459 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (81%)
Length = 1470
Score = 152 bits (383), Expect = 8e-38
Identities = 80/93 (86%), Positives = 82/93 (88%)
Frame = +3
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 771 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 950
Query: 61 IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKH 93
IQKESTLHLVLRLRGG R PK +K+
Sbjct: 951 IQKESTLHLVLRLRGGF*ARCVMLDVFPKHLKN 1049
Score = 150 bits (379), Expect = 2e-37
Identities = 76/76 (100%), Positives = 76/76 (100%)
Frame = +3
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 543 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 722
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 723 IQKESTLHLVLRLRGG 770
Score = 150 bits (379), Expect = 2e-37
Identities = 76/76 (100%), Positives = 76/76 (100%)
Frame = +3
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 315 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 494
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 495 IQKESTLHLVLRLRGG 542
Score = 150 bits (379), Expect = 2e-37
Identities = 76/76 (100%), Positives = 76/76 (100%)
Frame = +3
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 87 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 266
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 267 IQKESTLHLVLRLRGG 314
>CA851404 GP|15982787|g AT4g05320/C17L7_240 {Arabidopsis thaliana}, partial
(38%)
Length = 618
Score = 152 bits (383), Expect = 8e-38
Identities = 80/93 (86%), Positives = 82/93 (88%)
Frame = +1
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 295 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 474
Query: 61 IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKH 93
IQKESTLHLVLRLRGG R PK +K+
Sbjct: 475 IQKESTLHLVLRLRGGF*ARCVMLDVFPKHLKN 573
Score = 139 bits (350), Expect = 5e-34
Identities = 70/70 (100%), Positives = 70/70 (100%)
Frame = +1
Query: 7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 66
TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST
Sbjct: 85 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 264
Query: 67 LHLVLRLRGG 76
LHLVLRLRGG
Sbjct: 265 LHLVLRLRGG 294
>TC214599 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (33%)
Length = 724
Score = 151 bits (382), Expect = 1e-37
Identities = 85/122 (69%), Positives = 93/122 (75%)
Frame = +2
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 125 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 304
Query: 61 IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHRKVKLAVLQFYKVDDSGKVQRLRKE 120
IQKESTLHLVLRLRGG + ++ ++ + H R+ K + S R RKE
Sbjct: 305 IQKESTLHLVLRLRGGMQIFRQDSHWQ----NHNPRRSKALT----PLTTSRPRSRTRKE 460
Query: 121 CP 122
P
Sbjct: 461 SP 466
Score = 47.8 bits (112), Expect(2) = 1e-07
Identities = 22/23 (95%), Positives = 23/23 (99%)
Frame = +1
Query: 16 EVESSDTIDNVKAKIQDKEGIPP 38
+VESSDTIDNVKAKIQDKEGIPP
Sbjct: 400 KVESSDTIDNVKAKIQDKEGIPP 468
Score = 40.0 bits (92), Expect = 5e-04
Identities = 30/66 (45%), Positives = 37/66 (55%), Gaps = 2/66 (3%)
Frame = +3
Query: 5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQ-LEDGRTLADYNIQ 62
VKTLTGKTITLE + + + PP +QQRLI + L+ G +YNI
Sbjct: 366 VKTLTGKTITLEGRKL*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYNIX 545
Query: 63 KESTLH 68
KESTLH
Sbjct: 546 KESTLH 563
Score = 23.9 bits (50), Expect(2) = 1e-07
Identities = 14/30 (46%), Positives = 15/30 (49%)
Frame = +2
Query: 47 GKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
GK LE R L + LVLRLRGG
Sbjct: 497 GKXLEXXRPLPELQHPXGINPSLVLRLRGG 586
>TC203502 homologue to UP|Q8LPV5 (Q8LPV5) Polyubiquitin 2, complete
Length = 1040
Score = 150 bits (380), Expect = 2e-37
Identities = 77/82 (93%), Positives = 78/82 (94%)
Frame = +1
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 154 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 333
Query: 61 IQKESTLHLVLRLRGGAKKRKK 82
IQKESTLHLVLRLRGG + K
Sbjct: 334 IQKESTLHLVLRLRGGTMIKVK 399
Score = 97.4 bits (241), Expect = 2e-21
Identities = 46/74 (62%), Positives = 59/74 (79%)
Frame = +1
Query: 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 62
I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T +YNI+
Sbjct: 388 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKEYNIE 567
Query: 63 KESTLHLVLRLRGG 76
S LHLVL LRGG
Sbjct: 568 GGSVLHLVLALRGG 609
>TC203381 homologue to UP|Q8LPV5 (Q8LPV5) Polyubiquitin 2, complete
Length = 833
Score = 150 bits (380), Expect = 2e-37
Identities = 77/82 (93%), Positives = 78/82 (94%)
Frame = +2
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 65 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 244
Query: 61 IQKESTLHLVLRLRGGAKKRKK 82
IQKESTLHLVLRLRGG + K
Sbjct: 245 IQKESTLHLVLRLRGGTMIKVK 310
Score = 100 bits (248), Expect = 4e-22
Identities = 50/99 (50%), Positives = 69/99 (69%), Gaps = 9/99 (9%)
Frame = +2
Query: 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 62
I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T +YNI+
Sbjct: 299 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKEYNIE 478
Query: 63 KESTLHLVLRLRGG---------AKKRKKKTYTKPKKIK 92
S LHLVL LRGG ++ ++K Y+ P +K
Sbjct: 479 GGSVLHLVLALRGGTY*CRCHIRTQRHERKLYSCPVSLK 595
>TC214607 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (27%)
Length = 562
Score = 150 bits (379), Expect = 2e-37
Identities = 76/76 (100%), Positives = 76/76 (100%)
Frame = +1
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 298 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 477
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 478 IQKESTLHLVLRLRGG 525
Score = 34.3 bits (77), Expect = 0.025
Identities = 15/16 (93%), Positives = 16/16 (99%)
Frame = +1
Query: 61 IQKESTLHLVLRLRGG 76
+QKESTLHLVLRLRGG
Sbjct: 250 VQKESTLHLVLRLRGG 297
Score = 27.3 bits (59), Expect = 3.0
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +1
Query: 1 MQIFVKTLTGKT 12
MQIFVKTLTGKT
Sbjct: 526 MQIFVKTLTGKT 561
>TC224828 UP|Q9AR09 (Q9AR09) Ubiquitin fused to ribosomal protein L40,
complete
Length = 1196
Score = 150 bits (379), Expect = 2e-37
Identities = 76/76 (100%), Positives = 76/76 (100%)
Frame = +3
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 528 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 707
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 708 IQKESTLHLVLRLRGG 755
>TC203465 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (76%)
Length = 911
Score = 150 bits (379), Expect = 2e-37
Identities = 76/76 (100%), Positives = 76/76 (100%)
Frame = +1
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 49 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 228
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 229 IQKESTLHLVLRLRGG 276
Score = 150 bits (379), Expect = 2e-37
Identities = 76/76 (100%), Positives = 76/76 (100%)
Frame = +1
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 505 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 684
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 685 IQKESTLHLVLRLRGG 732
Score = 150 bits (379), Expect = 2e-37
Identities = 76/76 (100%), Positives = 76/76 (100%)
Frame = +1
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 277 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 456
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 457 IQKESTLHLVLRLRGG 504
Score = 116 bits (290), Expect = 5e-27
Identities = 58/59 (98%), Positives = 58/59 (98%)
Frame = +1
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 59
MQIFVKTLTGKTITLEVESSDTIDNVKAKI DKEGIPPDQQRLIFAGKQLEDGRTLADY
Sbjct: 733 MQIFVKTLTGKTITLEVESSDTIDNVKAKIHDKEGIPPDQQRLIFAGKQLEDGRTLADY 909
>TC203571 UP|Q41067 (Q41067) Polyubiquitin, partial (29%)
Length = 732
Score = 150 bits (379), Expect = 2e-37
Identities = 76/76 (100%), Positives = 76/76 (100%)
Frame = +3
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 288 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 467
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 468 IQKESTLHLVLRLRGG 515
Score = 149 bits (376), Expect = 5e-37
Identities = 75/76 (98%), Positives = 76/76 (99%)
Frame = +3
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 60 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 239
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 240 IQKESTLHLVLRLRGG 287
Score = 142 bits (358), Expect = 6e-35
Identities = 72/72 (100%), Positives = 72/72 (100%)
Frame = +3
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 516 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 695
Query: 61 IQKESTLHLVLR 72
IQKESTLHLVLR
Sbjct: 696 IQKESTLHLVLR 731
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.319 0.135 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,156,633
Number of Sequences: 63676
Number of extensions: 71159
Number of successful extensions: 860
Number of sequences better than 10.0: 191
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of query: 155
length of database: 12,639,632
effective HSP length: 89
effective length of query: 66
effective length of database: 6,972,468
effective search space: 460182888
effective search space used: 460182888
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Lotus: description of TM0008.10