BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0007.12
(1387 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NP595172 polyprotein [Glycine max] 1204 0.0
TC211627 119 8e-54
BI425021 172 7e-43
NP395548 reverse transcriptase [Glycine max] 159 8e-39
AW570005 150 3e-36
TC211067 similar to UP|Q9LQH2 (Q9LQH2) F15O4.13, partial (9%) 129 2e-34
NP395547 reverse transcriptase [Glycine max] 140 3e-33
CO982196 139 7e-33
CF922488 135 1e-31
BI317050 129 7e-30
CD487724 129 7e-30
BI317638 weakly similar to GP|9294238|dbj| contains similarity t... 117 5e-26
TC233069 90 5e-26
BI317507 107 3e-23
BM084967 105 1e-22
BQ299538 104 2e-22
AW830191 103 4e-22
TC213962 101 3e-21
BM885356 100 6e-21
TC213114 weakly similar to UP|Q8W150 (Q8W150) Polyprotein, parti... 98 3e-20
>NP595172 polyprotein [Glycine max]
Length = 4659
Score = 1204 bits (3115), Expect = 0.0
Identities = 635/1360 (46%), Positives = 857/1360 (62%), Gaps = 25/1360 (1%)
Frame = +1
Query: 53 KSLKLQLTSFDGSKPLEWLFHAEQFFQLHQTPPAQRLELVSFYMQGDALSWYRWMHNNYQ 112
+S+KL FDG ++W+F AEQFF + TP A RL + S ++ D + WY+ +
Sbjct: 286 RSVKLDFPRFDGKNVMDWIFKAEQFFDYYATPDADRLIIASVHLDQDVVPWYQMLQKTEP 465
Query: 113 LSFWEAFTRALAIRFGPSAYENHQQELFKLQQTSTVAEYQTRFEKVSNQVVGLSPEAVLD 172
S W+AFTRAL + FGPSAY+ + LFKL Q++TV EY +F + N+V GLS EA+LD
Sbjct: 466 FSSWQAFTRALELDFGPSAYDCPRATLFKLNQSATVNEYYMQFTALVNRVDGLSAEAILD 645
Query: 173 CFISGLVPEIKRELAILKPYSVSQAIGIAKQIEAKIKE---------------SRSSQQR 217
CF+SGL EI R++ ++P ++++A+ +AK E K S +S +
Sbjct: 646 CFVSGLQEEISRDVKAMEPRTLTKAVALAKLFEEKYTSPPKTKTFSNLARNFTSNTSATQ 825
Query: 218 VFRPNQSHFTSPSTAIVPSQPRPLASSSQAPKPVASSSLPIKRLNSAQMQERRALGLCFN 277
+ P +P + P P P + KP + IK+++ A++Q RR LC+
Sbjct: 826 KYPPTNQKNDNPKPNLPPLLPTP------STKPFNLRNQNIKKISPAEIQLRREKNLCYF 987
Query: 278 CDEKYTIGHKCQPRLFLLMLADEVQETQEAAISLLSDTVEDVTVPVHEEAMHFQLSDQAL 337
CDEK++ HKC R +L+ +E E Q +D VT + + LS A+
Sbjct: 988 CDEKFSPAHKCPNRQVMLLQLEETDEDQ-------TDEQVMVTEEANMDDDTHHLSLNAM 1146
Query: 338 HGRPSPRTLKFTAIVNGHPVVVLVDTGSSNNFVPPRTVSFLHLKVTPIPTFPVMVGNGAH 397
G T++FT V G V +LVD GSS+NF+ PR L L V P P V+VGNG
Sbjct: 1147 RGSNGVGTIRFTGQVGGIAVKILVDGGSSDNFIQPRVAQVLKLPVEPAPNLRVLVGNGQI 1326
Query: 398 IPCAGYIPDIEVTFAGNTFHIPFYVMDLQGADFVLGLDWLKTLGKVISDFSIPSMSFVVN 457
+ G + + + G +P Y++ + GAD +LG WL TLG ++D++ ++ F N
Sbjct: 1327 LSAEGIVQQLPLHIQGQEVKVPVYLLQISGADVILGSTWLATLGPHVADYAALTLKFFQN 1506
Query: 458 GKTCTLEGEPLPPPSHASFNHFQRLIHTDAIAECHTITFLPSPPSTPSPQFLTLENLSTP 517
K TL+GE + A +HF+RL +T +I EC I + P TL++L
Sbjct: 1507 DKFITLQGEGNSEATQAQLHHFRRLQNTKSIEECFAIQLIQK--EVPED---TLKDL--- 1662
Query: 518 PPDFDPALWELLQSYAPVFSTPHGLPPTRFHDHHINLLPNTPPVNVRPYRYPHSQKEAMA 577
P + DP L LL +YA VF+ P LPP R DH I L + PV VRPYRYPH+QK+ +
Sbjct: 1663 PTNIDPELAILLHTYAQVFAVPASLPPQREQDHAIPLKQGSGPVKVRPYRYPHTQKDQIE 1842
Query: 578 TILTDMLQEGIVVPSTSPYSSPVLLIKKKDGTWRFCVDFRSLNSITIKDRFPIPTIDELL 637
++ +ML +GI+ PS SP+S P+LL+KKKDG+WRFC D+R+LN+IT+KD FP+PT+DELL
Sbjct: 1843 KMIQEMLVQGIIQPSNSPFSLPILLVKKKDGSWRFCTDYRALNAITVKDSFPMPTVDELL 2022
Query: 638 DELGGASHFSKLDLRSGFHQIRLATEDTHKTAFRTVDGHYEFLVMPFGLTNAPSTFQAAM 697
DEL GA +FSKLDLRSG+HQI + ED KTAFRT GHYE+LVMPFGLTNAP+TFQ M
Sbjct: 2023 DELHGAQYFSKLDLRSGYHQILVQPEDREKTAFRTHHGHYEWLVMPFGLTNAPATFQCLM 2202
Query: 698 NDLLRPFLRRFVLVFFDDILVYSPSLSAHMTHLKEVLEVLLSHKFYAKLSKCIFGVTSVS 757
N + + LR+FVLVFFDDIL+YS S H+ HL+ VL+ L H+ +A+LSKC FG T V
Sbjct: 2203 NKIFQFALRKFVLVFFDDILIYSASWKDHLKHLESVLQTLKQHQLFARLSKCSFGDTEVD 2382
Query: 758 YLGHIISANGVGPDPSKVQAIVDWPVPRNLTALRGFLGLTGFYRRFIKNYAAHASHLTDL 817
YLGH +S GV + +KVQA++DWP P N+ LRGFLGLTG+YRRFIK+YA A LTDL
Sbjct: 2383 YLGHKVSGLGVSMENTKVQAVLDWPTPNNVKQLRGFLGLTGYYRRFIKSYANIAGPLTDL 2562
Query: 818 LKQDQKDKHTLLPWSSAAADSFQHLKDLIISAPVLVLPDFSATFDIETDASGTAVGAVLS 877
L++D W++ A +F LK + APVL LPDFS F +ETDASG VGAVL
Sbjct: 2563 LQKDS------FLWNNEAEAAFVKLKKAMTEAPVLSLPDFSQPFILETDASGIGVGAVLG 2724
Query: 878 QKGHPISFFSKKLTLQMQHQSTYVREMYAVTEAVKKWRQYLIGHKFRIYTDQQSLKHLMT 937
Q GHPI++FSKKL +MQ QS Y RE+ A+TEA+ K+R YL+G+KF I TDQ+SLK LM
Sbjct: 2725 QNGHPIAYFSKKLAPRMQKQSAYTRELLAITEALSKFRHYLLGNKFIIRTDQRSLKSLMD 2904
Query: 938 QTFQTPDQIKWATKLLGFDYEIFYKPGSENRVADALSRC--------HSSELPLLAA--I 987
Q+ QTP+Q W K LG+D++I YKPG +N+ ADALSR HS L L A I
Sbjct: 2905 QSLQTPEQQAWLHKFLGYDFKIEYKPGKDNQAADALSRMFMLAWSEPHSIFLEELRARLI 3084
Query: 988 SSPVPEIITQLKQYYKTPEGIQLIVDKSTLPHFRVHHEVLYFKDGLFVPEHDQWRTSILS 1047
S P + QL + YK + H+ V +LY+KD + +P ++ IL
Sbjct: 3085 SDPH---LKQLMETYK---------QGADASHYTVREGLLYWKDRVVIPAEEEIVNKILQ 3228
Query: 1048 EYHASPAAGHSGLKPTLARLMASFNWPGIQTETKTFIKQCLPCQYNKYVPAKKSGLLQPL 1107
EYH+SP GH+G+ TLARL A F WP +Q + K +I++CL CQ K +GLLQPL
Sbjct: 3229 EYHSSPIGGHAGITRTLARLKAQFYWPKMQEDVKAYIQKCLICQQAKSNNTLPAGLLQPL 3408
Query: 1108 PTPAQIWEDISMDFITGLPPSHGHTVAWVIVDRLSKYAHFVALPANFTATSLANRFSSEI 1167
P P Q+WED++MDFITGLP S G +V V++DRL+KYAHF+ L A++ + +A F S I
Sbjct: 3409 PIPQQVWEDVAMDFITGLPNSFGLSVIMVVIDRLTKYAHFIPLKADYNSKVVAEAFMSHI 3588
Query: 1168 CRLHGIPRSIVSDRDKIFLSHFWRDLFRVYGTKLRFSTAYHPETDGQTEVVNRGLETYLR 1227
+LHGIPRSIVSDRD++F S FW+ LF++ GT L S+AYHP++DGQ+EV+N+ LE YLR
Sbjct: 3589 VKLHGIPRSIVSDRDRVFTSTFWQHLFKLQGTTLAMSSAYHPQSDGQSEVLNKCLEMYLR 3768
Query: 1228 CFAGEQPRSWYKFLHLAELWYNTSFHSAAGMTPFQAVYGRPPPSLLAYVPGSSAIQSLDE 1287
CF E P+ W K L AE WYNT++H + GMTPF+A+YGR PP+L + E
Sbjct: 3769 CFTYEHPKGWVKALPWAEFWYNTAYHMSLGMTPFRALYGREPPTLTRQACSIDDPAEVRE 3948
Query: 1288 SLQQRT*ILESLKANLQRAQHRMKIQKDKSRREVTFEENAWVLLRLQPYRQRSLAHRLSN 1347
L R +L LK NL RAQ MK Q DK R +V+F+ VL++LQPYRQ S R +
Sbjct: 3949 QLTDRDALLAKLKINLTRAQQVMKRQADKKRLDVSFQIGDEVLVKLQPYRQHSAVLRKNQ 4128
Query: 1348 KLAKRFYGPFRVKRRIGSVAYELDLPPTSKLHNVFHVSLL 1387
KL+ R++GPF+V +IG VAY+L+LP +++H VFHVS L
Sbjct: 4129 KLSMRYFGPFKVLAKIGDVAYKLELPSAARIHPVFHVSQL 4248
>TC211627
Length = 1034
Score = 119 bits (298), Expect(2) = 8e-54
Identities = 59/124 (47%), Positives = 82/124 (65%)
Frame = +3
Query: 1264 VYGRPPPSLLAYVPGSSAIQSLDESLQQRT*ILESLKANLQRAQHRMKIQKDKSRREVTF 1323
+YG+PPP+L Y G+S ++++D L I +L LQ+ Q MK D RR++TF
Sbjct: 243 MYGKPPPALPLYSAGTSTVEAVDAILHSLATIHHTLTCRLQKYQDSMKRIADSHRRDLTF 422
Query: 1324 EENAWVLLRLQPYRQRSLAHRLSNKLAKRFYGPFRVKRRIGSVAYELDLPPTSKLHNVFH 1383
WV +RL PYRQ S+ + KL+KRFYGP++++ R+G VAY L LPPTSK+H +FH
Sbjct: 423 NIGDWVYVRL*PYRQTSIQSTYT-KLSKRFYGPYQIQARVGQVAYRLQLPPTSKIHPIFH 599
Query: 1384 VSLL 1387
VSLL
Sbjct: 600 VSLL 611
Score = 111 bits (278), Expect(2) = 8e-54
Identities = 50/79 (63%), Positives = 60/79 (75%)
Frame = +2
Query: 1184 IFLSHFWRDLFRVYGTKLRFSTAYHPETDGQTEVVNRGLETYLRCFAGEQPRSWYKFLHL 1243
IF+S W +LF + GTKLRFSTAYHP+TDGQTEV+NR LE YLR F + P+ W+KFL L
Sbjct: 2 IFISGLWHELFHISGTKLRFSTAYHPQTDGQTEVINRILEQYLRAFVHDHPQHWFKFLSL 181
Query: 1244 AELWYNTSFHSAAGMTPFQ 1262
AE YNTS HS G +PF+
Sbjct: 182 AE*CYNTSVHSGIGFSPFE 238
>BI425021
Length = 426
Score = 172 bits (437), Expect = 7e-43
Identities = 81/142 (57%), Positives = 104/142 (73%)
Frame = -1
Query: 1104 LQPLPTPAQIWEDISMDFITGLPPSHGHTVAWVIVDRLSKYAHFVALPANFTATSLANRF 1163
L PLP P + WED+SMDFI GLPP HGHT +V+V+R SK H LP + TA +A+ F
Sbjct: 426 LCPLPVPQRPWEDLSMDFIVGLPPYHGHTTIFVVVNRFSKGIHLGTLPTSHTAHMVASLF 247
Query: 1164 SSEICRLHGIPRSIVSDRDKIFLSHFWRDLFRVYGTKLRFSTAYHPETDGQTEVVNRGLE 1223
+ + +LHG PRSIVSDRD +F+SHFW+DLFR+ GT LR S+AYHP+TDGQTEV+NR +E
Sbjct: 246 LNIVIKLHGFPRSIVSDRDPLFISHFWQDLFRLSGTVLRMSSAYHPQTDGQTEVLNRVIE 67
Query: 1224 TYLRCFAGEQPRSWYKFLHLAE 1245
YLR F +PR+ +F+ E
Sbjct: 66 QYLRAFVHGRPRNLGRFIPWVE 1
>NP395548 reverse transcriptase [Glycine max]
Length = 762
Score = 159 bits (402), Expect = 8e-39
Identities = 87/244 (35%), Positives = 132/244 (53%), Gaps = 19/244 (7%)
Frame = +1
Query: 583 MLQEGIVVP-STSPYSSPVLLIKKKDG------------------TWRFCVDFRSLNSIT 623
+L+ G++ P S S + SPVL++ KK+G +W+ C+D+R LN T
Sbjct: 22 LLEVGLIYPISDSAWVSPVLVVSKKEGMTVIRNEKNDLIPTRTVTSWKLCIDYRKLNEAT 201
Query: 624 IKDRFPIPTIDELLDELGGASHFSKLDLRSGFHQIRLATEDTHKTAFRTVDGHYEFLVMP 683
KD FP+P +D++L+ L G +++ LD G++QI + +D K AF G + + +P
Sbjct: 202 RKDHFPLPFMDQMLERLAGHAYYCFLDAYFGYNQIVVDPKDQEKMAFTCPFGVFAYRRIP 381
Query: 684 FGLTNAPSTFQAAMNDLLRPFLRRFVLVFFDDILVYSPSLSAHMTHLKEVLEVLLSHKFY 743
FGL NAP+TFQ M + + + + VF DD V+ PSL + + L+ VL+ +
Sbjct: 382 FGLCNAPTTFQMCMLAIFADIVEKSIEVFMDDFSVFVPSLESCLKKLEMVLQRCVETNLV 561
Query: 744 AKLSKCIFGVTSVSYLGHIISANGVGPDPSKVQAIVDWPVPRNLTALRGFLGLTGFYRRF 803
KC F V LGH IS G+ D +K+ I P P N+ +R FLG FYRRF
Sbjct: 562 LNWEKCHFMVREGIVLGHKISTRGIEVDQTKIDVIEKLPPPSNVKGIRSFLGQARFYRRF 741
Query: 804 IKNY 807
IK++
Sbjct: 742 IKDF 753
>AW570005
Length = 413
Score = 150 bits (380), Expect = 3e-36
Identities = 77/140 (55%), Positives = 98/140 (70%)
Frame = -2
Query: 782 PVPRNLTALRGFLGLTGFYRRFIKNYAAHASHLTDLLKQDQKDKHTLLPWSSAAADSFQH 841
P PR +LRGFL LTGFYRRFIK YAA A+ L+ LL +D WS A +FQ
Sbjct: 412 PPPRTARSLRGFLRLTGFYRRFIKGYAAMAAPLSHLLTKDS------FVWSPEADVAFQA 251
Query: 842 LKDLIISAPVLVLPDFSATFDIETDASGTAVGAVLSQKGHPISFFSKKLTLQMQHQSTYV 901
LK+++ + VL LPDF+ F +ETDASG+ +GAVLSQ+GHPI+FFSK+ ++ STYV
Sbjct: 250 LKNVVTNTLVLALPDFTKPFTVETDASGSDMGAVLSQEGHPIAFFSKEFCPKLVRSSTYV 71
Query: 902 REMYAVTEAVKKWRQYLIGH 921
E+ A+T VKKWRQYL+GH
Sbjct: 70 HELAAITNVVKKWRQYLLGH 11
>TC211067 similar to UP|Q9LQH2 (Q9LQH2) F15O4.13, partial (9%)
Length = 589
Score = 129 bits (324), Expect(2) = 2e-34
Identities = 67/167 (40%), Positives = 99/167 (59%)
Frame = +1
Query: 782 PVPRNLTALRGFLGLTGFYRRFIKNYAAHASHLTDLLKQDQKDKHTLLPWSSAAADSFQH 841
P +++ +R F GL FYRRF+ N++ AS L +L+K K+ W +F
Sbjct: 97 PTLKSVGDIRSFHGLASFYRRFVPNFSTVASPLNELVK-----KNMAFTWGEKQEQAFAL 261
Query: 842 LKDLIISAPVLVLPDFSATFDIETDASGTAVGAVLSQKGHPISFFSKKLTLQMQHQSTYV 901
LK+ + APVL LPDFS TF++E DASG V AVL Q GHPI++FS+KL + TY
Sbjct: 262 LKEKLTKAPVLALPDFSKTFELECDASGVGVRAVLLQGGHPIAYFSEKLHSATLNYPTYD 441
Query: 902 REMYAVTEAVKKWRQYLIGHKFRIYTDQQSLKHLMTQTFQTPDQIKW 948
+E+YA+ A + W +L+ +F I++D QSLK++ ++ KW
Sbjct: 442 KELYALIRAPQTWEHFLVCKEFVIHSDHQSLKYIRGKSKLNKRHAKW 582
Score = 37.0 bits (84), Expect(2) = 2e-34
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +2
Query: 751 FGVTSVSYLGHIISANGVGPDPSKVQAIVDWPVP 784
F V ++ + G ++ NGV DP K++AI +WP P
Sbjct: 2 FCVDNIFFSGFVVGRNGVQMDPEKIKAIQEWPPP 103
>NP395547 reverse transcriptase [Glycine max]
Length = 762
Score = 140 bits (354), Expect = 3e-33
Identities = 83/244 (34%), Positives = 121/244 (49%), Gaps = 19/244 (7%)
Frame = +1
Query: 583 MLQEGIVVP-STSPYSSPVLLIKKKDGT------------------WRFCVDFRSLNSIT 623
+L+ G++ P S S + SPV ++ KK G WR C+D+R LN T
Sbjct: 22 LLEAGLIYPISDSSWVSPVQVVPKKGGMTVVKNDRNELIPTRRVTRWRMCIDYRKLNEAT 201
Query: 624 IKDRFPIPTIDELLDELGGASHFSKLDLRSGFHQIRLATEDTHKTAFRTVDGHYEFLVMP 683
KD +P+P +D++L L S + LD SG++QI + +D KTAF + + MP
Sbjct: 202 RKDHYPLPFMDQMLKRLARQSFYRFLDGYSGYNQIAVDPQDQEKTAFTCPFSVFAYRRMP 381
Query: 684 FGLTNAPSTFQAAMNDLLRPFLRRFVLVFFDDILVYSPSLSAHMTHLKEVLEVLLSHKFY 743
FGL NA +TFQ M + + + + VF DD + S + +L++VL+
Sbjct: 382 FGLCNASTTFQRCMMAIFDDMVEKCIEVFMDDFSFFGASFGNCLANLEKVLQRCEKSNLV 561
Query: 744 AKLSKCIFGVTSVSYLGHIISANGVGPDPSKVQAIVDWPVPRNLTALRGFLGLTGFYRRF 803
KC F V LGH IS G+ K+ I P P N+ + FLG GFYRRF
Sbjct: 562 LNWEKCHFMVQEGIVLGHKISKRGIEVVKEKLDVIDKLPPPVNVKGIHSFLGHVGFYRRF 741
Query: 804 IKNY 807
IK++
Sbjct: 742 IKDF 753
>CO982196
Length = 812
Score = 139 bits (351), Expect = 7e-33
Identities = 78/194 (40%), Positives = 109/194 (55%), Gaps = 1/194 (0%)
Frame = +1
Query: 997 QLKQYYKTPEGIQLIVDKSTL-PHFRVHHEVLYFKDGLFVPEHDQWRTSILSEYHASPAA 1055
+++ Y + E Q I+ K+T P + + LYFKD L + ++ +L E SP
Sbjct: 229 EIQAYLELYEIYQGILTKTTKKPGYAIRGGKLYFKDRLVLSKNSTKIPLLLKELQDSPLG 408
Query: 1056 GHSGLKPTLARLMASFNWPGIQTETKTFIKQCLPCQYNKYVPAKKSGLLQPLPTPAQIWE 1115
GHSG T R+ W G++ T+ ++ C C+ NK +GLL LP P ++W
Sbjct: 409 GHSGFFRTFKRVANVVFWQGMKKTTRDYVAACEICRRNKTSTLSPAGLL*LLPIPTKVWT 588
Query: 1116 DISMDFITGLPPSHGHTVAWVIVDRLSKYAHFVALPANFTATSLANRFSSEICRLHGIPR 1175
DISMDFI GLP + G V+VDRL+KYAHF AL +TA +A F E+ RLHG P
Sbjct: 589 DISMDFIGGLPKAQGKDNILVVVDRLTKYAHFFALSHPYTAKEVAELFIKELVRLHGFPA 768
Query: 1176 SIVSDRDKIFLSHF 1189
SIVSD ++F+S F
Sbjct: 769 SIVSDXXRLFMSLF 810
>CF922488
Length = 741
Score = 135 bits (341), Expect = 1e-31
Identities = 84/251 (33%), Positives = 134/251 (52%)
Frame = +3
Query: 603 IKKKDGTWRFCVDFRSLNSITIKDRFPIPTIDELLDELGGASHFSKLDLRSGFHQIRLAT 662
+ K+DG CVD+R LN + KD+FP+P I+ L+D S FS +D SG++QI++A
Sbjct: 3 VLKEDGKV*MCVDYRDLN*ASPKDKFPLPHINVLVDNTTSFSQFSFMDGFSGYNQIKIAP 182
Query: 663 EDTHKTAFRTVDGHYEFLVMPFGLTNAPSTFQAAMNDLLRPFLRRFVLVFFDDILVYSPS 722
ED KT F T+ G + + M FGL N +T+Q AM L + + + V+ DD++V S +
Sbjct: 183 EDMEKTTFITLWGTFCYKAMSFGLKNVGATYQRAMVALF*DMMHKEIEVYMDDMIVKSRT 362
Query: 723 LSAHMTHLKEVLEVLLSHKFYAKLSKCIFGVTSVSYLGHIISANGVGPDPSKVQAIVDWP 782
H+ +L+++ L ++ +KC+F V S L I S G+ D +KV+ I++
Sbjct: 363 EEEHLVNLRKLFRRLRKYRLRLNPAKCMFEVKSRKLLDFIDS*RGIEVDSNKVKVILEMA 542
Query: 783 VPRNLTALRGFLGLTGFYRRFIKNYAAHASHLTDLLKQDQKDKHTLLPWSSAAADSFQHL 842
P ++GFLG + RFI A L LL ++Q + W +F+ +
Sbjct: 543 KPHTEKQVQGFLGRLNYIVRFIS*LIATCEPLFILLCKNQ-----FVKWDHDC*VAFERI 707
Query: 843 KDLIISAPVLV 853
K +I+ VLV
Sbjct: 708 KQCLINPHVLV 740
>BI317050
Length = 425
Score = 129 bits (325), Expect = 7e-30
Identities = 58/140 (41%), Positives = 92/140 (65%)
Frame = +3
Query: 55 LKLQLTSFDGSKPLEWLFHAEQFFQLHQTPPAQRLELVSFYMQGDALSWYRWMHNNYQLS 114
+ L + FD + +F QFF H+TP +RL++ SFY+ G+ALSW++W++ N QL+
Sbjct: 6 MNLDVPRFDDTNAPTLIFKISQFFDYHRTPEDERLQVTSFYLDGEALSWFQWLYRNDQLT 185
Query: 115 FWEAFTRALAIRFGPSAYENHQQELFKLQQTSTVAEYQTRFEKVSNQVVGLSPEAVLDCF 174
W +F +AL +RF S Y++ + LFKL QT +V + FE ++N +VGL +L CF
Sbjct: 186 SWSSFLQALEMRFAQSMYDDPRGTLFKLTQTGSVNSFLAMFEALANWIVGLPTPFLLSCF 365
Query: 175 ISGLVPEIKRELAILKPYSV 194
ISGL+P+I+RE+ ++P S+
Sbjct: 366 ISGLLPDIRREVLAMQPLSL 425
>CD487724
Length = 676
Score = 129 bits (325), Expect = 7e-30
Identities = 79/217 (36%), Positives = 109/217 (49%), Gaps = 1/217 (0%)
Frame = +3
Query: 355 HPVVVLVDTGSSNNFVPPRTVSFLHLKVTPIPTFPVMVGNGAHIPCAGYIPDIEVTFAGN 414
HP+V LVD GS++NFV VS L L P VMVGNG H+ C I ++
Sbjct: 18 HPLVYLVDGGSTHNFVQQPLVSQLGLPCRSTPPLRVMVGNGHHLKCTTICEAIPISIQNI 197
Query: 415 TFHIPFYVMDLQGADFVLGLDWLKTLGKVISDFSIPSMSFVVNGKTCTLEGEPLPPPSHA 474
F + YV+ + GA+ VLG+ WLKTLG ++ D++ SM F + L+GE
Sbjct: 198 EFLVHLYVLPIVGANIVLGVQWLKTLGPILVDYNSLSMQFFYQHRLVQLKGESEAQLGLL 377
Query: 475 SFNHFQRLIHT-DAIAECHTITFLPSPPSTPSPQFLTLENLSTPPPDFDPALWELLQSYA 533
+ + +RL T + + H + T SP P P + LL ++
Sbjct: 378 NHHQLRRLHQTHEPVTYFHIAILTENTSPTSSPPL--------PQP-----IQHLLDQFS 518
Query: 534 PVFSTPHGLPPTRFHDHHINLLPNTPPVNVRPYRYPH 570
+F P GLPP R DHHI+LLP + PVN+R Y YPH
Sbjct: 519 ALFQ*PQGLPPARETDHHIHLLP*SEPVNMRLY*YPH 629
>BI317638 weakly similar to GP|9294238|dbj| contains similarity to reverse
transcriptase~gene_id:K11J14.5 {Arabidopsis thaliana},
partial (5%)
Length = 420
Score = 117 bits (292), Expect = 5e-26
Identities = 59/136 (43%), Positives = 80/136 (58%)
Frame = -2
Query: 1059 GLKPTLARLMASFNWPGIQTETKTFIKQCLPCQYNKYVPAKKSGLLQPLPTPAQIWEDIS 1118
G+ P + F I E + CL CQ+ KY + LL PL P + WED+S
Sbjct: 410 GVIPESRKH*LDFQRTSIGLECAQMLPNCLDCQHTKYETKRIVDLLCPLLVPHRPWEDLS 231
Query: 1119 MDFITGLPPSHGHTVAWVIVDRLSKYAHFVALPANFTATSLANRFSSEICRLHGIPRSIV 1178
+DFITGL P H HT V+VD SK H LP++ TA ++A F + +LHG+PRS+V
Sbjct: 230 LDFITGLLPYHVHTAILVVVDHFSKGIHLGMLPSSHTAHTVACLFIDSVAKLHGLPRSLV 51
Query: 1179 SDRDKIFLSHFWRDLF 1194
SD D +F+SHFW++LF
Sbjct: 50 SDCDLLFVSHFWQELF 3
>TC233069
Length = 881
Score = 89.7 bits (221), Expect(2) = 5e-26
Identities = 41/69 (59%), Positives = 51/69 (73%)
Frame = +2
Query: 1087 CLPCQYNKYVPAKKSGLLQPLPTPAQIWEDISMDFITGLPPSHGHTVAWVIVDRLSKYAH 1146
C CQ NKY K GLLQPLP P Q+W+DISMDF+T LPPS G + WVIVD +KY+H
Sbjct: 257 CTNCQQNKYSTQK*FGLLQPLPIP*QVWKDISMDFVTHLPPS*GKKMIWVIVDCWTKYSH 436
Query: 1147 FVALPANFT 1155
F++LPA+ +
Sbjct: 437 FLSLPAHLS 463
Score = 48.1 bits (113), Expect(2) = 5e-26
Identities = 25/66 (37%), Positives = 34/66 (50%)
Frame = +1
Query: 1008 IQLIVDKSTLPHFRVHHEVLYFKDGLFVPEHDQWRTSILSEYHASPAAGHSGLKPTLARL 1067
+Q +D +T P +L + LF+P + R +L E H S GHSG+K TL RL
Sbjct: 22 LQQKLDNATTPDCTCQDGLLLYCTHLFIPLESELRAILLGECHDSLLGGHSGIKGTLNRL 201
Query: 1068 MASFNW 1073
SF W
Sbjct: 202 FVSFAW 219
>BI317507
Length = 359
Score = 107 bits (268), Expect = 3e-23
Identities = 51/110 (46%), Positives = 73/110 (66%), Gaps = 1/110 (0%)
Frame = -1
Query: 713 FDDILVYSPSLSAHMTHLKEVLEVLLSHKFYAKLSKCIFGVTSVSYLGHIISANGVGPDP 772
F +IL+YSP +H+ HL VL+VL + A KC F T++ YLGH+IS + V D
Sbjct: 359 FYNILIYSPDWKSHIMHLTAVLDVLKKERLVANRKKCYFSQTTIEYLGHVISKDCVAMDS 180
Query: 773 SKVQAIVDWPVPRNLTALRGFLGLTGFYRRFIKNYAAHASH-LTDLLKQD 821
+KV+++++WPVP+N+ + FL LTG+YR+FIK+Y A LTDL K D
Sbjct: 179 NKVKSVIEWPVPKNVKRVCSFLRLTGYYRKFIKDYGKLAPRPLTDLTKND 30
>BM084967
Length = 426
Score = 105 bits (262), Expect = 1e-22
Identities = 49/131 (37%), Positives = 76/131 (57%)
Frame = -2
Query: 1010 LIVDKSTLPHFRVHHEVLYFKDGLFVPEHDQWRTSILSEYHASPAAGHSGLKPTLARLMA 1069
++ + +T P V +++ +++P + ++L EYH+SP H G+ T+ARL
Sbjct: 398 ILAEPTTYPDHSVIQDLILKNGCIWLPSGFSFIPTLLLEYHSSPTDAHIGVTKTMARLSE 219
Query: 1070 SFNWPGIQTETKTFIKQCLPCQYNKYVPAKKSGLLQPLPTPAQIWEDISMDFITGLPPSH 1129
+F W GI+ + + F+ CL CQY KY K +GLL PLP P + WED+S +FI GL
Sbjct: 218 NFTWIGIRKDVEQFVAACLDCQYTKYEAQKMAGLLCPLPVPCRPWEDLSFNFIIGLSEFR 39
Query: 1130 GHTVAWVIVDR 1140
G+T V+V R
Sbjct: 38 GYTAILVVVGR 6
>BQ299538
Length = 426
Score = 104 bits (260), Expect = 2e-22
Identities = 50/112 (44%), Positives = 70/112 (61%)
Frame = +3
Query: 1181 RDKIFLSHFWRDLFRVYGTKLRFSTAYHPETDGQTEVVNRGLETYLRCFAGEQPRSWYKF 1240
R F + ++ GT L+ ST+YHP DGQT VN LET+LRCF +QP+ ++
Sbjct: 93 RGSNFCEFILEGIVKLPGTYLKMSTSYHP*IDGQT--VNHCLETFLRCFVADQPKM*VQW 266
Query: 1241 LHLAELWYNTSFHSAAGMTPFQAVYGRPPPSLLAYVPGSSAIQSLDESLQQR 1292
L AE WYNT+FH++ G TPF+ VYGR PP L ++PG ++++ LQ R
Sbjct: 267 LSWAEYWYNTNFHASTGTTPFEVVYGRKPPVLNRFLPGEVRVEAVRRELQDR 422
Score = 48.1 bits (113), Expect = 3e-05
Identities = 19/40 (47%), Positives = 29/40 (72%)
Frame = +1
Query: 1154 FTATSLANRFSSEICRLHGIPRSIVSDRDKIFLSHFWRDL 1193
++A LA F+ E+ LHG+P S++SD D IF+S FW++L
Sbjct: 13 YSARVLAEIFTKEVVHLHGVPASVLSDEDPIFVSSFWKEL 132
>AW830191
Length = 372
Score = 103 bits (258), Expect = 4e-22
Identities = 52/123 (42%), Positives = 75/123 (60%)
Frame = +3
Query: 1226 LRCFAGEQPRSWYKFLHLAELWYNTSFHSAAGMTPFQAVYGRPPPSLLAYVPGSSAIQSL 1285
LRC G +P+ W K L AE W+NT+++++ +TPF+ +YG PP LL SS + +
Sbjct: 6 LRCLTGTKPQQWPKRLSWAEFWFNTNYNNSLKLTPFKVLYGCDPPHLLKGAIISSTAEEV 185
Query: 1286 DESLQQRT*ILESLKANLQRAQHRMKIQKDKSRREVTFEENAWVLLRLQPYRQRSLAHRL 1345
+ R +L LK NL +AQ++MK D+SRR + WV L+LQPYRQRSLA +
Sbjct: 186 NVMTNDRDQMLHDLKGNLAKAQNQMK-YADRSRRSIPLNVGDWVYLKLQPYRQRSLARKT 362
Query: 1346 SNK 1348
+ K
Sbjct: 363 NEK 371
>TC213962
Length = 799
Score = 101 bits (251), Expect = 3e-21
Identities = 52/124 (41%), Positives = 71/124 (56%)
Frame = -2
Query: 55 LKLQLTSFDGSKPLEWLFHAEQFFQLHQTPPAQRLELVSFYMQGDALSWYRWMHNNYQLS 114
+KL++ FDG PL W+F QF P + L + SF M+G AL WYRWM N L+
Sbjct: 381 MKLEVPWFDGQDPLGWIFKITQFSNYQGIPNVEHLIVGSFNMEGPALCWYRWMSWNGFLT 202
Query: 115 FWEAFTRALAIRFGPSAYENHQQELFKLQQTSTVAEYQTRFEKVSNQVVGLSPEAVLDCF 174
W A AL F PS ++ LFKLQQ V +Y T F++ +N++V L+P +L+CF
Sbjct: 201 TWSAMLHALESCFTPSF*DDPHDALFKLQQRGFVNDYLTEFKRFANRIVSLAPPFLLNCF 22
Query: 175 ISGL 178
I L
Sbjct: 21 IFSL 10
>BM885356
Length = 420
Score = 100 bits (248), Expect = 6e-21
Identities = 44/91 (48%), Positives = 56/91 (61%)
Frame = -3
Query: 44 PQTNPQTLPKSLKLQLTSFDGSKPLEWLFHAEQFFQLHQTPPAQRLELVSFYMQGDALSW 103
P P P LKL + FDGS W+F QFF+ H TP +RL + SFYM+G AL+W
Sbjct: 283 PAAGPSAAPHRLKLDVPRFDGSDATGWIFKITQFFEYHTTPDHERLTIASFYMEGQALAW 104
Query: 104 YRWMHNNYQLSFWEAFTRALAIRFGPSAYEN 134
++WMH N QLS W AF AL RF ++YE+
Sbjct: 103 FQWMHRNGQLSSWPAFLHALHSRFASTSYED 11
>TC213114 weakly similar to UP|Q8W150 (Q8W150) Polyprotein, partial (7%)
Length = 810
Score = 97.8 bits (242), Expect = 3e-20
Identities = 45/78 (57%), Positives = 58/78 (73%)
Frame = +3
Query: 1310 MKIQKDKSRREVTFEENAWVLLRLQPYRQRSLAHRLSNKLAKRFYGPFRVKRRIGSVAYE 1369
MK D+SRR VT WV L+LQPYR +SLA + + KL+ RFYGP+++K++IG VA+E
Sbjct: 3 MKAYADRSRRAVTLSVGDWVYLKLQPYRLKSLAKKRNEKLSPRFYGPYQIKKQIGLVAFE 182
Query: 1370 LDLPPTSKLHNVFHVSLL 1387
LDLPP K+H VFH SLL
Sbjct: 183 LDLPPARKIHPVFHASLL 236
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.322 0.136 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,628,553
Number of Sequences: 63676
Number of extensions: 1180552
Number of successful extensions: 8373
Number of sequences better than 10.0: 161
Number of HSP's better than 10.0 without gapping: 7498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8240
length of query: 1387
length of database: 12,639,632
effective HSP length: 109
effective length of query: 1278
effective length of database: 5,698,948
effective search space: 7283255544
effective search space used: 7283255544
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)
Lotus: description of TM0007.12