BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0007.11
(264 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC203298 UP|CB23_SOYBN (P09756) Chlorophyll a-b binding protein ... 505 e-144
TC225132 UP|Q39831 (Q39831) Chlorophyll a/b-binding protein, com... 503 e-143
TC203607 UP|Q43437 (Q43437) Photosystem II type I chlorophyll a/... 476 e-135
TC203746 UP|CB22_SOYBN (P09755) Chlorophyll a-b binding protein ... 363 e-128
TC203621 UP|Q43437 (Q43437) Photosystem II type I chlorophyll a/... 422 e-118
TC203286 UP|Q43437 (Q43437) Photosystem II type I chlorophyll a/... 415 e-117
TC214059 homologue to UP|Q93YG3 (Q93YG3) Chlorophyll a/b binding... 412 e-115
TC214292 homologue to UP|Q93YG3 (Q93YG3) Chlorophyll a/b binding... 404 e-113
TC203649 UP|Q43437 (Q43437) Photosystem II type I chlorophyll a/... 402 e-113
TC203719 homologue to UP|Q43437 (Q43437) Photosystem II type I c... 367 e-102
TC204008 homologue to UP|Q9XQB1 (Q9XQB1) LHCII type III chloroph... 348 1e-96
TC203280 UP|Q43437 (Q43437) Photosystem II type I chlorophyll a/... 345 9e-96
CD395422 300 4e-82
TC203341 UP|Q43437 (Q43437) Photosystem II type I chlorophyll a/... 288 2e-78
BE803860 similar to GP|506629|gb|A photosystem II type I chlorop... 288 2e-78
BF068121 similar to GP|506629|gb|A photosystem II type I chlorop... 285 2e-77
BE191265 similar to GP|1053216|gb| chlorophyll a/b-binding prote... 280 6e-76
TC203567 UP|Q43437 (Q43437) Photosystem II type I chlorophyll a/... 278 1e-75
BF069726 similar to GP|506629|gb|A photosystem II type I chlorop... 276 9e-75
BE803833 similar to SP|P09756|CB23 Chlorophyll A-B binding prote... 275 1e-74
>TC203298 UP|CB23_SOYBN (P09756) Chlorophyll a-b binding protein 3,
chloroplast precursor (LHCII type I CAB-3) (LHCP),
complete
Length = 1518
Score = 505 bits (1300), Expect = e-144
Identities = 246/263 (93%), Positives = 254/263 (96%)
Frame = +2
Query: 2 AASTMALSSPSLAGQALNLSPSSQEVGRFSMRKAATTKKVVSSGSPWYGPDRVKYLGPFS 61
AAS+MALSSPSLAG+A+ L PS+ EVGR SMRK T K VSSGSPWYGPDRVKYLGPFS
Sbjct: 527 AASSMALSSPSLAGKAVKLGPSAPEVGRVSMRKTVT--KQVSSGSPWYGPDRVKYLGPFS 700
Query: 62 GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNG 121
GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL+RNG
Sbjct: 701 GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNG 880
Query: 122 VKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLG 181
VKFGEAVWFKAGSQIFSEGGLDYLGNPSL+HAQSILAIWATQVILMGAVEGYRIAGGPLG
Sbjct: 881 VKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLG 1060
Query: 182 EVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENL 241
EVTDP+YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENL
Sbjct: 1061EVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENL 1240
Query: 242 ADHLSDPVNNNAWAYATNFVPGK 264
ADHL+DPVNNNAWAYATNFVPGK
Sbjct: 1241ADHLADPVNNNAWAYATNFVPGK 1309
>TC225132 UP|Q39831 (Q39831) Chlorophyll a/b-binding protein, complete
Length = 1427
Score = 503 bits (1294), Expect = e-143
Identities = 245/263 (93%), Positives = 253/263 (96%)
Frame = +1
Query: 2 AASTMALSSPSLAGQALNLSPSSQEVGRFSMRKAATTKKVVSSGSPWYGPDRVKYLGPFS 61
AAS+MALSSPSLAG+A+ L PS+ EVGR SMRK T K SSGSPWYGPDRVKYLGPFS
Sbjct: 436 AASSMALSSPSLAGKAVKLGPSAPEVGRVSMRKTVT--KQASSGSPWYGPDRVKYLGPFS 609
Query: 62 GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNG 121
GEPPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPELL+RNG
Sbjct: 610 GEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLSRNG 789
Query: 122 VKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLG 181
VKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLG
Sbjct: 790 VKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLG 969
Query: 182 EVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENL 241
EVTDP+YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENL
Sbjct: 970 EVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENL 1149
Query: 242 ADHLSDPVNNNAWAYATNFVPGK 264
ADHL+DPVNNNAWAYATNFVPGK
Sbjct: 1150ADHLADPVNNNAWAYATNFVPGK 1218
>TC203607 UP|Q43437 (Q43437) Photosystem II type I chlorophyll a/b-binding
protein precursor, partial (92%)
Length = 916
Score = 476 bits (1224), Expect = e-135
Identities = 232/246 (94%), Positives = 238/246 (96%), Gaps = 2/246 (0%)
Frame = +3
Query: 21 SPSSQE--VGRFSMRKAATTKKVVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGW 78
SPS+ + VGR SMRK A+ K VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGW
Sbjct: 6 SPSTPQLGVGRVSMRKTAS--KTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGW 179
Query: 79 DTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFS 138
DTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFS
Sbjct: 180 DTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFS 359
Query: 139 EGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGL 198
EGGLDYLGNPSL+HAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDP+YPGGSFDPLGL
Sbjct: 360 EGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGL 539
Query: 199 ADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWAYAT 258
ADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL+DPVNNNAWAYAT
Sbjct: 540 ADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT 719
Query: 259 NFVPGK 264
NFVPGK
Sbjct: 720 NFVPGK 737
>TC203746 UP|CB22_SOYBN (P09755) Chlorophyll a-b binding protein 2,
chloroplast precursor (LHCII type I CAB-2) (LHCP),
complete
Length = 887
Score = 363 bits (932), Expect(2) = e-128
Identities = 176/180 (97%), Positives = 179/180 (98%)
Frame = +2
Query: 82 GLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGG 141
GLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGG
Sbjct: 221 GLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGG 400
Query: 142 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADD 201
LDYLGNPSL+HAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDP+YPGGSFDPLGLADD
Sbjct: 401 LDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADD 580
Query: 202 PEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWAYATNFV 261
PEA AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL+DPVNNNAWAYATNFV
Sbjct: 581 PEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFV 760
Score = 113 bits (283), Expect(2) = e-128
Identities = 60/75 (80%), Positives = 63/75 (84%), Gaps = 2/75 (2%)
Frame = +1
Query: 1 MAASTMALSSPSLAGQALNLSPSSQE--VGRFSMRKAATTKKVVSSGSPWYGPDRVKYLG 58
MAASTMALSS SLAGQA+ L+PS+ E VGR SMRK T K VSSGSPWYGPDRVKYLG
Sbjct: 1 MAASTMALSSSSLAGQAMKLAPSTPELGVGRVSMRK--TAPKTVSSGSPWYGPDRVKYLG 174
Query: 59 PFSGEPPSYLTGEFP 73
PFSGE PSYLTGEFP
Sbjct: 175PFSGEAPSYLTGEFP 219
>TC203621 UP|Q43437 (Q43437) Photosystem II type I chlorophyll a/b-binding
protein precursor, partial (89%)
Length = 780
Score = 422 bits (1084), Expect = e-118
Identities = 217/266 (81%), Positives = 225/266 (84%), Gaps = 2/266 (0%)
Frame = +1
Query: 1 MAASTMALSSPSLAGQALNLSPSSQE--VGRFSMRKAATTKKVVSSGSPWYGPDRVKYLG 58
MAASTMALSS SLAGQA+ L+PS+ + VGR SMRK A+ K VSSGSPWYGPDRVKYLG
Sbjct: 73 MAASTMALSSSSLAGQAIKLAPSTPQLGVGRVSMRKTAS--KTVSSGSPWYGPDRVKYLG 246
Query: 59 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 118
PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL+
Sbjct: 247 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 426
Query: 119 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGG 178
RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSL+HAQSILAIWA QVILMGAVEGYRI
Sbjct: 427 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWANQVILMGAVEGYRI--- 597
Query: 179 PLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 238
AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL
Sbjct: 598 ---------------------------AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 696
Query: 239 ENLADHLSDPVNNNAWAYATNFVPGK 264
ENLADHL+DPVNNNAWAYATNFVPGK
Sbjct: 697 ENLADHLADPVNNNAWAYATNFVPGK 774
>TC203286 UP|Q43437 (Q43437) Photosystem II type I chlorophyll a/b-binding
protein precursor, partial (77%)
Length = 739
Score = 415 bits (1067), Expect = e-117
Identities = 198/202 (98%), Positives = 202/202 (99%)
Frame = +3
Query: 63 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV 122
EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL+RNGV
Sbjct: 3 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 182
Query: 123 KFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGE 182
KFGEAVWFKAGSQIFSEGGLDYLGNPSL+HAQSILAIWATQVILMGAVEGYRIAGGPLGE
Sbjct: 183 KFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGE 362
Query: 183 VTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 242
VTDP+YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA
Sbjct: 363 VTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 542
Query: 243 DHLSDPVNNNAWAYATNFVPGK 264
DHL+DPVNNNAWAYATNFVPGK
Sbjct: 543 DHLADPVNNNAWAYATNFVPGK 608
>TC214059 homologue to UP|Q93YG3 (Q93YG3) Chlorophyll a/b binding protein
type II precursor, complete
Length = 1079
Score = 412 bits (1058), Expect = e-115
Identities = 194/237 (81%), Positives = 214/237 (89%)
Frame = +2
Query: 28 GRFSMRKAATTKKVVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP 87
GR +MR+ + + S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADP
Sbjct: 203 GRTNMRRTVKS----APQSIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADP 370
Query: 88 ETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGN 147
ETFA+NRELEVIHSRWAMLGALGC FPE+L +NGVKFGEAVWFKAGSQIFSEGGLDYLGN
Sbjct: 371 ETFARNRELEVIHSRWAMLGALGCTFPEILEKNGVKFGEAVWFKAGSQIFSEGGLDYLGN 550
Query: 148 PSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAE 207
P+L+HAQSILAIWA QV+LMG VEGYR+ GGPLGE DP+YPGG+FDPLGLADDP+AFAE
Sbjct: 551 PNLIHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAE 730
Query: 208 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWAYATNFVPGK 264
LKVKELKNGRLAMFSMFGFFVQAIVTGKGP++NL DH++DPV NNAWAYATNFVPG+
Sbjct: 731 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANNAWAYATNFVPGQ 901
>TC214292 homologue to UP|Q93YG3 (Q93YG3) Chlorophyll a/b binding protein
type II precursor, complete
Length = 1686
Score = 404 bits (1038), Expect = e-113
Identities = 187/216 (86%), Positives = 204/216 (93%)
Frame = +2
Query: 49 YGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 108
YGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGA
Sbjct: 782 YGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGA 961
Query: 109 LGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMG 168
LGC FPE+L +NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWA QV+LMG
Sbjct: 962 LGCTFPEILEKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMG 1141
Query: 169 AVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV 228
VEGYR+ GGPLGE DP+YPGG+FDPLGLADDP+AFAELKVKELKNGRLAMFSMFGFFV
Sbjct: 1142FVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFV 1321
Query: 229 QAIVTGKGPLENLADHLSDPVNNNAWAYATNFVPGK 264
QAIVTGKGP++NL DH++DPV NNAWAYATNFVPG+
Sbjct: 1322QAIVTGKGPIQNLYDHVADPVANNAWAYATNFVPGQ 1429
>TC203649 UP|Q43437 (Q43437) Photosystem II type I chlorophyll a/b-binding
protein precursor, partial (74%)
Length = 777
Score = 402 bits (1033), Expect = e-113
Identities = 192/196 (97%), Positives = 196/196 (99%)
Frame = +3
Query: 69 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAV 128
TGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL+RNGVKFGEAV
Sbjct: 3 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAV 182
Query: 129 WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPLY 188
WFKAGSQIFSEGGLDYLGNPSL+HAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDP+Y
Sbjct: 183 WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIY 362
Query: 189 PGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDP 248
PGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL+DP
Sbjct: 363 PGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 542
Query: 249 VNNNAWAYATNFVPGK 264
VNNNAWAYATNFVPGK
Sbjct: 543 VNNNAWAYATNFVPGK 590
>TC203719 homologue to UP|Q43437 (Q43437) Photosystem II type I chlorophyll
a/b-binding protein precursor, partial (69%)
Length = 908
Score = 367 bits (941), Expect = e-102
Identities = 177/181 (97%), Positives = 181/181 (99%)
Frame = +2
Query: 84 SADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLD 143
SADPETFA+NRELEVIHSRWAMLGALGCVFPELL+RNGVKFGEAVWFKAGSQIFSEGGLD
Sbjct: 230 SADPETFARNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLD 409
Query: 144 YLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPE 203
YLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDP+YPGGSFDPLGLADDPE
Sbjct: 410 YLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPE 589
Query: 204 AFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWAYATNFVPG 263
AFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL+DPVNNNAWAYATNFVPG
Sbjct: 590 AFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 769
Query: 264 K 264
K
Sbjct: 770 K 772
>TC204008 homologue to UP|Q9XQB1 (Q9XQB1) LHCII type III chlorophyll a/b
binding protein, complete
Length = 1220
Score = 348 bits (894), Expect = 1e-96
Identities = 184/268 (68%), Positives = 202/268 (74%), Gaps = 5/268 (1%)
Frame = +1
Query: 1 MAASTMALSSPSLAGQALNLSPSSQEVGRFSMRKAAT--TKKVVSSGSPWYGPDRVKYLG 58
MAA+ MA ++ S +A + ++R + T K WYGPDRVKYLG
Sbjct: 139 MAATLMAATTSSGTLKATPFLGQGKGANANALRDVVSMGTGKYTMGNDLWYGPDRVKYLG 318
Query: 59 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 118
PFS + PSYL GEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+ PE+L
Sbjct: 319 PFSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLE 498
Query: 119 R-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG 177
+ V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+ QVILMG VEGYRI G
Sbjct: 499 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYRING 678
Query: 178 -GPLGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 235
+GE D LYPGG FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGK
Sbjct: 679 LDGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 855
Query: 236 GPLENLADHLSDPVNNNAWAYATNFVPG 263
GPLENL DHL +PV NNAW YAT F PG
Sbjct: 856 GPLENLLDHLDNPVANNAWVYATKFSPG 939
>TC203280 UP|Q43437 (Q43437) Photosystem II type I chlorophyll a/b-binding
protein precursor, partial (64%)
Length = 1094
Score = 345 bits (886), Expect = 9e-96
Identities = 169/189 (89%), Positives = 178/189 (93%), Gaps = 1/189 (0%)
Frame = +2
Query: 77 GWDTAGLSADPETFAKNR-ELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQ 135
G D +S +P ++ ELEVIHSRWAMLGALGCVFPELL+RNGVKFGEAVWFKAGSQ
Sbjct: 383 GLDCTPVSENPSCRIRHEGELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQ 562
Query: 136 IFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPLYPGGSFDP 195
IFSEGGLDYLGNPSL+HAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDP+YPGGSF+P
Sbjct: 563 IFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFNP 742
Query: 196 LGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWA 255
LGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL+DPVNNNAWA
Sbjct: 743 LGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA 922
Query: 256 YATNFVPGK 264
YATNFVPGK
Sbjct: 923 YATNFVPGK 949
>CD395422
Length = 658
Score = 300 bits (768), Expect = 4e-82
Identities = 145/147 (98%), Positives = 147/147 (99%)
Frame = -1
Query: 118 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG 177
ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG
Sbjct: 583 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG 404
Query: 178 GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 237
GPLGEVTDP+YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 403 GPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 224
Query: 238 LENLADHLSDPVNNNAWAYATNFVPGK 264
LENLADHL+DPVNNNAWAYATNFVPGK
Sbjct: 223 LENLADHLADPVNNNAWAYATNFVPGK 143
>TC203341 UP|Q43437 (Q43437) Photosystem II type I chlorophyll a/b-binding
protein precursor, partial (53%)
Length = 1569
Score = 288 bits (737), Expect = 2e-78
Identities = 138/141 (97%), Positives = 141/141 (99%)
Frame = +3
Query: 124 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEV 183
FGEAVWFKAGSQIFSEGGLDYLGNPSL+HAQSILAIWATQVILMGAVEGYRIAGGPLGEV
Sbjct: 543 FGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEV 722
Query: 184 TDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 243
TDP+YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLAD
Sbjct: 723 TDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 902
Query: 244 HLSDPVNNNAWAYATNFVPGK 264
HL+DPVNNNAWAYATNFVPGK
Sbjct: 903 HLADPVNNNAWAYATNFVPGK 965
>BE803860 similar to GP|506629|gb|A photosystem II type I chlorophyll
a/b-binding protein {Glycine max}, partial (67%)
Length = 544
Score = 288 bits (737), Expect = 2e-78
Identities = 143/177 (80%), Positives = 153/177 (85%)
Frame = +2
Query: 73 PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKA 132
P DY WDTAGLSADPETFA NRELEVIHSRWAMLG+LGCVFPELL+RNGVKF + WFKA
Sbjct: 2 PCDYRWDTAGLSADPETFA*NRELEVIHSRWAMLGSLGCVFPELLSRNGVKFRKTRWFKA 181
Query: 133 GSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPLYPGGS 192
GS IFSEGGLDYLGNPSL+HAQSILAIWATQ+IL GAVEGYRIAGGPL E TDP+YPGGS
Sbjct: 182 GSHIFSEGGLDYLGNPSLIHAQSILAIWATQIILKGAVEGYRIAGGPLCEDTDPIYPGGS 361
Query: 193 FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPV 249
PLGLADDP+A AE KV EL+ GRLAMFSM GFFV A+VTGKG L L L+DPV
Sbjct: 362 LHPLGLADDPDAIAEQKVNELQTGRLAMFSMSGFFVHALVTGKGTL*ILC*SLADPV 532
>BF068121 similar to GP|506629|gb|A photosystem II type I chlorophyll
a/b-binding protein {Glycine max}, partial (64%)
Length = 541
Score = 285 bits (728), Expect = 2e-77
Identities = 138/180 (76%), Positives = 155/180 (85%), Gaps = 3/180 (1%)
Frame = +2
Query: 43 SSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSR 102
S GSPW GP+RVKYLGPFSG+P SYLTGEFPGDYGWDT GL+ D +TFA+NREL+VIHSR
Sbjct: 2 SCGSPWCGPNRVKYLGPFSGDPASYLTGEFPGDYGWDTGGLTVDQQTFARNRELKVIHSR 181
Query: 103 WAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAT 162
WAMLGALGCV PELL+RNGVK GEAVWFKAGS IFSEGGLDYL NPSLVHAQSIL+IWAT
Sbjct: 182 WAMLGALGCVLPELLSRNGVKLGEAVWFKAGSHIFSEGGLDYLSNPSLVHAQSILSIWAT 361
Query: 163 QVILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKV---KELKNGRLA 219
QV+LMGAV+GYRIAGG + EVT +Y S+DP GLADDP AFAE V KEL++G ++
Sbjct: 362 QVMLMGAVDGYRIAGGRVWEVTVAIYHCCSYDPFGLADDPRAFAES*VK*TKELESGHVS 541
>BE191265 similar to GP|1053216|gb| chlorophyll a/b-binding protein {Glycine
max}, partial (64%)
Length = 586
Score = 280 bits (715), Expect = 6e-76
Identities = 145/196 (73%), Positives = 157/196 (79%)
Frame = +2
Query: 2 AASTMALSSPSLAGQALNLSPSSQEVGRFSMRKAATTKKVVSSGSPWYGPDRVKYLGPFS 61
AA +MALSSPSLAG+A+ L PS+ EVGR +MRK T + SSGSPWYGP RVKYLGPFS
Sbjct: 5 AACSMALSSPSLAGKAVKLGPSAPEVGRVTMRKTVTNQ--ASSGSPWYGPYRVKYLGPFS 178
Query: 62 GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNG 121
GEPPSYLTGEFPGDY WDTAGLSADPETF +NREL VIH RWAML ALGCVFPELL+RNG
Sbjct: 179 GEPPSYLTGEFPGDYSWDTAGLSADPETFTRNREL*VIHYRWAMLRALGCVFPELLSRNG 358
Query: 122 VKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLG 181
VKFGEAVWFKAG QIFSEGGLDYL NPSLVHAQSILA+ ATQ +L GA E R G +G
Sbjct: 359 VKFGEAVWFKAGYQIFSEGGLDYLSNPSLVHAQSILAV*ATQNMLNGADEVNRWIVGAIG 538
Query: 182 EVTDPLYPGGSFDPLG 197
P GS+ LG
Sbjct: 539 MTRRP*TVEGSYMRLG 586
>TC203567 UP|Q43437 (Q43437) Photosystem II type I chlorophyll a/b-binding
protein precursor, partial (52%)
Length = 1448
Score = 278 bits (712), Expect = 1e-75
Identities = 133/136 (97%), Positives = 136/136 (99%)
Frame = +2
Query: 129 WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPLY 188
WFKAGSQIFSEGGLDYLGNPSL+HAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDP+Y
Sbjct: 905 WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIY 1084
Query: 189 PGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDP 248
PGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL+DP
Sbjct: 1085 PGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 1264
Query: 249 VNNNAWAYATNFVPGK 264
VNNNAWAYATNFVPGK
Sbjct: 1265 VNNNAWAYATNFVPGK 1312
>BF069726 similar to GP|506629|gb|A photosystem II type I chlorophyll
a/b-binding protein {Glycine max}, partial (70%)
Length = 559
Score = 276 bits (705), Expect = 9e-75
Identities = 138/186 (74%), Positives = 151/186 (80%)
Frame = +2
Query: 77 GWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQI 136
GW T GLSA P+T AKNRELEVIHS WAML ALGCVFPELL+ NGVKFGE+VWF GS I
Sbjct: 2 GWYTDGLSAHPQTLAKNRELEVIHSTWAMLRALGCVFPELLSLNGVKFGESVWFTVGSHI 181
Query: 137 FSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPL 196
FSEGGL Y GNP L+HA SILAIWAT VILM A GYRIAGGPLGEVTD +YP G F+PL
Sbjct: 182 FSEGGLHYSGNPCLIHAYSILAIWATHVILMCAAVGYRIAGGPLGEVTDLMYPLGHFNPL 361
Query: 197 GLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWAY 256
LADDP+A +EL VK+L NGRLA+FSMFGF V AIV GPLENL DHL+D V+ N AY
Sbjct: 362 RLADDPKAVSELSVKDLLNGRLALFSMFGFSVHAIVNSMGPLENLDDHLADAVDFNT*AY 541
Query: 257 ATNFVP 262
ATNF+P
Sbjct: 542 ATNFMP 559
>BE803833 similar to SP|P09756|CB23 Chlorophyll A-B binding protein 3
chloroplast precursor (LHCII type I CAB-3) (LHCP).
[Soybean], partial (69%)
Length = 607
Score = 275 bits (704), Expect = 1e-74
Identities = 143/201 (71%), Positives = 157/201 (77%)
Frame = +2
Query: 4 STMALSSPSLAGQALNLSPSSQEVGRFSMRKAATTKKVVSSGSPWYGPDRVKYLGPFSGE 63
S+MALSSP LAG+A+ L PS + R SMR T K SSGSPWYGP RVKY GPFSGE
Sbjct: 11 SSMALSSPYLAGKAVKLGPSYP*LRRVSMRNTVT--KQASSGSPWYGPYRVKY*GPFSGE 184
Query: 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVK 123
PPSYLTGEFPGDY WDTAGLSADPETFAKNRELEVIHS WAMLGALGCV PELL RNGVK
Sbjct: 185 PPSYLTGEFPGDYRWDTAGLSADPETFAKNRELEVIHSMWAMLGALGCVLPELLFRNGVK 364
Query: 124 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEV 183
FGE+ WF AGS IFS+GGLDYLG PSLVH+QS+L I AT VIL GAV+ IAG L +
Sbjct: 365 FGESEWFMAGSHIFSDGGLDYLGYPSLVHSQSMLDISATHVILSGAVDDNLIAGVLLRQD 544
Query: 184 TDPLYPGGSFDPLGLADDPEA 204
TD +Y G + P L+ DP+A
Sbjct: 545 TDTIYTAGHYHPSVLS*DPQA 607
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.317 0.136 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,533,071
Number of Sequences: 63676
Number of extensions: 132600
Number of successful extensions: 1005
Number of sequences better than 10.0: 248
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of query: 264
length of database: 12,639,632
effective HSP length: 96
effective length of query: 168
effective length of database: 6,526,736
effective search space: 1096491648
effective search space used: 1096491648
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0007.11