TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0005.1
         (346 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC233628 weakly similar to UP|Q8H6Q7 (Q8H6Q7) CTV.22, partial (6%)     55  4e-08
TC205107 similar to UP|Q8H6Q7 (Q8H6Q7) CTV.22, partial (34%)           50  2e-06
TC205106 similar to UP|Q8H6Q7 (Q8H6Q7) CTV.22, partial (33%)           42  5e-04
TC208639 similar to UP|Q9LMB8 (Q9LMB8) F14D16.25, partial (14%)        30  1.6
CO983373                                                               29  2.7
TC210090 similar to UP|Q9LFH0 (Q9LFH0) PDR9 ABC transporter, par...    28  8.0
TC227153 similar to UP|Q9FMI3 (Q9FMI3) Emb|CAB77570.1, partial (...    28  8.0

>TC233628 weakly similar to UP|Q8H6Q7 (Q8H6Q7) CTV.22, partial (6%)
          Length = 626

 Score = 55.5 bits (132), Expect = 4e-08
 Identities = 26/78 (33%), Positives = 45/78 (57%)
 Frame = +1

Query: 1  MKDTHFARLNAIYQQICSKLRQHESSPHEPKTFNVEKFRGHKRLYEDIFAMFRLRKSQIT 60
          MK+ +   LN +YQ+  SKL++H S P +PK++ +EK +   ++ E   A  ++ KS ++
Sbjct: 22 MKENYLPELNEMYQKSASKLQRHTSLPQQPKSYKLEKLKKFMKMLECAIAFLQVSKSNMS 201

Query: 61 PEISERVDRVETLINSII 78
          P    ++D  E  I  II
Sbjct: 202PNYRLKLDSCEKQIIKII 255


>TC205107 similar to UP|Q8H6Q7 (Q8H6Q7) CTV.22, partial (34%)
          Length = 1762

 Score = 49.7 bits (117), Expect = 2e-06
 Identities = 70/266 (26%), Positives = 110/266 (41%), Gaps = 32/266 (12%)
 Frame = +2

Query: 83  LSSHQGKHSADVQSKQQVLPQVLGTQNDHLAKQTSQRNNMCLQEQQV-----------AK 131
           +SS Q   +A  Q +Q   PQV   Q +HL  +T     +                  + 
Sbjct: 203 VSSPQLLQAASPQIQQHSSPQV--DQQNHLPSKTKVTTPLQSSNSPFVGPTPSPPLAPSP 376

Query: 132 QYGNSEQGVNQLSIKEGPGKAVQRQTLCAQATEAS------GVSTNDMGFSSSALIKGSG 185
             G SE+ +  +S          +QT  A A   S      G+S + +    SA     G
Sbjct: 377 MPGESEKPIPCVSSISNAANIGHQQTGGAIAPAQSLAIGTPGISASPLLAEFSAPDGAHG 556

Query: 186 NLNEVSHKPALISEKPSAAMQRLIGVFTSMSSEALGASIGKIREVVHLNDAIPA------ 239
           N    +   + ++E+P   ++RLI    SMSS+AL A++  I  VV +ND I        
Sbjct: 557 NALAATSGKSTVTEQP---LERLINAVKSMSSKALSAAVMDIGSVVSMNDRIAGSAPGNG 727

Query: 240 --AKFIDEPLEMAGQQNQPSR-IPQG-----RKMARNINAMAFDTSRSCARTHESFNQLT 291
             A   ++ + M   + Q    I Q      ++M R  +A+  +   S    ++S  QLT
Sbjct: 728 SRAAVGEDLVSMTNCRLQARNFITQDGSNGIKRMKRYTSAIPLNVVPSAGSMNDSIKQLT 907

Query: 292 DVEEPDLDLVA-SKVKRSRIEVIYLL 316
             E  DL+  A S VK+ +IEV + L
Sbjct: 908 ASETSDLESTATSSVKKPKIEVNHAL 985


>TC205106 similar to UP|Q8H6Q7 (Q8H6Q7) CTV.22, partial (33%)
          Length = 1796

 Score = 41.6 bits (96), Expect = 5e-04
 Identities = 57/205 (27%), Positives = 88/205 (42%), Gaps = 22/205 (10%)
 Frame = +3

Query: 134 GNSEQGVNQLSIKEGPGKAVQRQTLCAQATEASGVSTNDMGFSSSALIK-------GSGN 186
           G+SE+ ++ +S          +QT  A A   S ++    G S+S L+          GN
Sbjct: 324 GDSEKLISGVSSISNAANIGYQQTGGAAAPGQS-LAIGTPGISASPLLAEFTGPDGAHGN 500

Query: 187 LNEVSHKPALISEKPSAAMQRLIGVFTSMSSEALGASIGKIREVVHLNDAIPAA------ 240
               +   + ++E+P   ++RLI    SMS +AL +++  I  VV +ND I  +      
Sbjct: 501 SLAPTSGKSTVTEQP---IERLIKAVKSMSPKALSSAVSDIGSVVSMNDRIAGSAPGNGS 671

Query: 241 -KFIDEPLEMAGQQNQPSR--IPQG-----RKMARNINAMAFDTSRSCARTHESFNQLTD 292
              + E L         +R  I Q      R+M R  NA   +   S    ++S  QLT 
Sbjct: 672 RAAVGEDLVAMTNCRLQARNFITQDGANGTRRMKRYTNATPLNVVTSAGSMNDSIKQLT- 848

Query: 293 VEEPDLDLVA-SKVKRSRIEVIYLL 316
            E  DLD  A S+ K  RIE  + L
Sbjct: 849 AEASDLDSTATSRFKMPRIEANHSL 923


>TC208639 similar to UP|Q9LMB8 (Q9LMB8) F14D16.25, partial (14%)
          Length = 1214

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 17/63 (26%), Positives = 29/63 (45%)
 Frame = +3

Query: 95  QSKQQVLPQVLGTQNDHLAKQTSQRNNMCLQEQQVAKQYGNSEQGVNQLSIKEGPGKAVQ 154
           + K+++ P+V   Q     ++    N  C        +YGNSEQ   +L I+   G   +
Sbjct: 570 KDKKKLPPRVTSMQKPLAIEKPVMLNRSCSPVVNTKIEYGNSEQCSTKLQIRSEQGSHNK 749

Query: 155 RQT 157
           R+T
Sbjct: 750 RKT 758


>CO983373 
          Length = 713

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
 Frame = -1

Query: 63  ISERVDRVETLINSIIQHQNLSSHQGKHS----ADVQSKQQVLPQVLGTQNDHLAK 114
           I E   + ETL N  I    L +HQ K      A++++K+++L Q L T NDH  K
Sbjct: 350 IKEGEKQRETLKNDSI----LWAHQTKDLVFDLAEIEAKEKILGQQLETDNDHQTK 195


>TC210090 similar to UP|Q9LFH0 (Q9LFH0) PDR9 ABC transporter, partial (12%)
          Length = 1189

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 14/55 (25%), Positives = 27/55 (48%), Gaps = 4/55 (7%)
 Frame = -3

Query: 41   HKRLYEDIFAMFRLRKSQITPEISERVDRVETLINSIIQ----HQNLSSHQGKHS 91
            H R Y+D F++  L  ++ TP  S+ +      + S  Q    ++NL+ +   H+
Sbjct: 1136 HNRSYKDQFSIANLENNKFTPTTSQEISHYLNNLQSSYQFSRNYKNLNHYHRAHA 972


>TC227153 similar to UP|Q9FMI3 (Q9FMI3) Emb|CAB77570.1, partial (10%)
          Length = 1583

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
 Frame = +1

Query: 68  DRVETLINSIIQHQNLSSHQGKH------SADVQSKQQVLPQVLGTQNDHLAKQTSQRNN 121
           D++E+ I++ IQ+++  ++  K         D++S QQ+ PQVL  Q      Q   +N+
Sbjct: 874 DKLESPISAKIQYESKEANLEKFPMGCLPDEDMKSNQQISPQVLEAQ-----PQDQFKNS 1038

Query: 122 MCLQEQQVAKQYGNSEQG 139
            C    + A     ++ G
Sbjct: 1039HCRDSSENASNNDLADAG 1092


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.317    0.130    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,784,551
Number of Sequences: 63676
Number of extensions: 151094
Number of successful extensions: 973
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of query: 346
length of database: 12,639,632
effective HSP length: 98
effective length of query: 248
effective length of database: 6,399,384
effective search space: 1587047232
effective search space used: 1587047232
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)