TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0004a.8
         (1041 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC233702 similar to UP|Q7X5W7 (Q7X5W7) Homeobox transcription fa...   556  e-158
CA799113                                                              273  2e-73
AW759795                                                               67  4e-11
BF066233                                                               50  4e-06
CO979744                                                               50  4e-06
TC221419                                                               50  5e-06
AW395625                                                               42  0.001
TC227389 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacety...    36  0.077
TC222458 similar to UP|Q9ZVA0 (Q9ZVA0) F9K20.14 protein, partial...    33  0.50
TC227390 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacety...    32  1.9
TC210699 weakly similar to UP|O80701 (O80701) F8K4.15 protein, p...    32  1.9
AI736063 similar to GP|9758225|dbj receptor-protein kinase-like ...    31  2.5
TC225868 UP|Q8LK24 (Q8LK24) SOS2-like protein kinase, complete         31  3.2
CF922367                                                               30  4.2
TC211055 similar to PIR|T46125|T46125 calmodulin-binding heat-sh...    30  5.5
CO981852                                                               30  7.2

>TC233702 similar to UP|Q7X5W7 (Q7X5W7) Homeobox transcription factor
           Hox7-like protein, partial (21%)
          Length = 1129

 Score =  556 bits (1433), Expect = e-158
 Identities = 284/361 (78%), Positives = 308/361 (84%)
 Frame = +1

Query: 376 RRSLNSLTWIEILRQVLVASGFGSKQGALRREALSKELNLLINYGISPGTLKGELFKILS 435
           RRSLNSLTWIEIL QVLVASGFGSKQG+LR E L+KELNLL+NYG+ PGTLK ELF ILS
Sbjct: 7   RRSLNSLTWIEILHQVLVASGFGSKQGSLRGEVLNKELNLLVNYGLCPGTLKSELFNILS 186

Query: 436 ERGNNGCKVSDLAKATQIAELNLASTTEELESLICSTLSSDITLFEKISSSAYRLRMSTV 495
           ERGN GCKV++LAK+ QIAELNLAST EELESLICSTLSSDITLFEKISS+AYRLRMSTV
Sbjct: 187 ERGNIGCKVAELAKSMQIAELNLASTPEELESLICSTLSSDITLFEKISSTAYRLRMSTV 366

Query: 496 TKDDDECQSDMEDYGSVDDELDDSDTCSCGDDFESGSVDSNIRKLKRVKSHKTKSAKLTV 555
            KD DE  SD ED+GSVDDEL+D+DTCS GDDFES  ++S+ RKLKR  SHK    K  V
Sbjct: 367 MKDGDESHSDTEDFGSVDDELNDTDTCSSGDDFESDPINSSKRKLKRANSHKNNMLK--V 540

Query: 556 FNEIDESHPGEVWLLGLMESEYSDLNIEEKLNALAALTDLLSSGSSIRMKDPVKVTADYD 615
           + EIDESHPGE WLLGLMESEYSDLNIEEKLNALAALTDL+SSGSSIRMKD  KVTAD +
Sbjct: 541 YTEIDESHPGEAWLLGLMESEYSDLNIEEKLNALAALTDLVSSGSSIRMKDSTKVTADCN 720

Query: 616 SSIQLRGSGAKIKRSVVKKPVPFWNQFGQMQRVKEGHLNSHPCPVDSSSLMSKFRSHEPS 675
           S IQLRGSGAKIKRS VKKP P WNQ        + HLNS PC VDSSSL+S+F +HE S
Sbjct: 721 SGIQLRGSGAKIKRSAVKKPGPLWNQ--------KVHLNSDPCAVDSSSLISRFHTHEAS 876

Query: 676 FEKGKGSTDSHPIQSVYLGSDRRYNRYWLFLGPCNADDPGHKRVYFESSEDGHWEVIDTE 735
           F KGK S  SHPIQSV+LGSDRRYNRYWLFLGPCN DDPGH+R+YFESSEDGHWEVIDTE
Sbjct: 877 FGKGKVSFISHPIQSVFLGSDRRYNRYWLFLGPCNVDDPGHRRIYFESSEDGHWEVIDTE 1056

Query: 736 E 736
           E
Sbjct: 1057E 1059


>CA799113 
          Length = 435

 Score =  273 bits (699), Expect = 2e-73
 Identities = 130/145 (89%), Positives = 140/145 (95%), Gaps = 1/145 (0%)
 Frame = +1

Query: 806 DNLNLSDSAK-SLPSAGAVVIEAGKGVEEQVQKWIRVQEYDSWIWNSFYLDLNVVKYGRR 864
           DNLNL+++A+ SLPSAGAVVIEAGK  EEQ+QKWIRVQEYDSWIWNSFYLDLNVVKYG+R
Sbjct: 1   DNLNLTETAEDSLPSAGAVVIEAGKKGEEQIQKWIRVQEYDSWIWNSFYLDLNVVKYGKR 180

Query: 865 SYLDSLARCKSCHDLYWRDERHCKICHMTFELDFDLEERYAIHIATCREKENSKTHPNHK 924
           SYLDSLARCKSCHDLYWRDERHCKICHMTFELDFDLEERYAIHIATCREKE+S T PNHK
Sbjct: 181 SYLDSLARCKSCHDLYWRDERHCKICHMTFELDFDLEERYAIHIATCREKEDSNTFPNHK 360

Query: 925 VLSSQIQSLKAAIYAIESVMPEDSL 949
           VLSSQIQSLKAA+YAIESVMPED++
Sbjct: 361 VLSSQIQSLKAAVYAIESVMPEDAM 435


>AW759795 
          Length = 311

 Score = 67.0 bits (162), Expect = 4e-11
 Identities = 33/67 (49%), Positives = 45/67 (66%)
 Frame = +2

Query: 689 QSVYLGSDRRYNRYWLFLGPCNADDPGHKRVYFESSEDGHWEVIDTEEALCTLLSVLDDR 748
           +S+ LG DRR NRYW F+   +++DPG  R++ E   DG W +ID+EEA   LL+ LD R
Sbjct: 56  RSLPLGQDRRRNRYWQFVASASSNDPGSGRIFVE-YHDGKWRLIDSEEAFDALLTSLDSR 232

Query: 749 GKREALL 755
           G RE+ L
Sbjct: 233 GIRESHL 253


>BF066233 
          Length = 103

 Score = 50.4 bits (119), Expect = 4e-06
 Identities = 23/33 (69%), Positives = 25/33 (75%)
 Frame = +2

Query: 498 DDDECQSDMEDYGSVDDELDDSDTCSCGDDFES 530
           D DE  SD ED GSVDDE + +DTCS GDDFES
Sbjct: 2   DGDESDSDTEDSGSVDDEFNVADTCSSGDDFES 100


>CO979744 
          Length = 795

 Score = 50.4 bits (119), Expect = 4e-06
 Identities = 27/75 (36%), Positives = 43/75 (57%)
 Frame = -2

Query: 693 LGSDRRYNRYWLFLGPCNADDPGHKRVYFESSEDGHWEVIDTEEALCTLLSVLDDRGKRE 752
           LG DR +NRYW F   C      + R++ ES +  +W    ++E L TL+S L+ +G+RE
Sbjct: 431 LGKDRDHNRYWWF---CR-----YGRIFVESCDSKNWGYYSSKEELDTLMSSLNCKGERE 276

Query: 753 ALLIESLERRQTSLC 767
             L + LE+   ++C
Sbjct: 275 RALQKHLEKYYNTIC 231


>TC221419 
          Length = 686

 Score = 50.1 bits (118), Expect = 5e-06
 Identities = 35/107 (32%), Positives = 57/107 (52%)
 Frame = +2

Query: 661 DSSSLMSKFRSHEPSFEKGKGSTDSHPIQSVYLGSDRRYNRYWLFLGPCNADDPGHKRVY 720
           DSS   SK +  E  FE+     +   I+   LG DR +NRYW F   C      + R++
Sbjct: 38  DSSEKNSKEQRKE-YFER---EMEKRFIRRSPLGKDRDHNRYWWF---CR-----YGRIF 181

Query: 721 FESSEDGHWEVIDTEEALCTLLSVLDDRGKREALLIESLERRQTSLC 767
            ES +  +W    ++E L  L+S L+ +G+RE +L + LE+  +++C
Sbjct: 182 VESCDSKNWGYYSSKEELDALMSSLNCKGERERVLRKHLEKYYSTIC 322


>AW395625 
          Length = 450

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 32/141 (22%), Positives = 55/141 (38%), Gaps = 15/141 (10%)
 Frame = +3

Query: 856 LNVVKYGRRSYLDSLARCKSCHDLYWRDERHCKICHMTFELDFDLEERYAIHIATCREKE 915
           L+ +K+G++      + C  C   Y+     C  C  TF              + C+   
Sbjct: 18  LSAMKFGKKWCHQLQSICDLCLHAYFSGGAPCSSCCRTF--------------SACKSNP 155

Query: 916 NSKTHPNHKV---------------LSSQIQSLKAAIYAIESVMPEDSLVGAWRKSAHKL 960
           +S  H  H                 LS +I+ LK  +  +E  +P ++L   WR S  K 
Sbjct: 156 SSSKHIVHSEGKVKIDIDCFHASSSLSLRIRLLKILLSIVEVTLPLEALQPLWRDSCRKS 335

Query: 961 WVKRLRRTSTLVELVQVLTDF 981
           W  +L  +S+  +L+Q +  F
Sbjct: 336 WSTKLDASSSSEDLLQDIISF 398


>TC227389 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetylase
           HD2-P39, partial (63%)
          Length = 1144

 Score = 36.2 bits (82), Expect = 0.077
 Identities = 22/58 (37%), Positives = 36/58 (61%), Gaps = 3/58 (5%)
 Frame = +3

Query: 482 KISSSAYRLRMSTVTKDDDECQ---SDMEDYGSVDDELDDSDTCSCGDDFESGSVDSN 536
           K S SA ++++    KD++E     SD +D+GS D+E++D+D+ S   D ESG  D +
Sbjct: 492 KASGSAKQVKVVEPKKDNEEDSDDDSDDDDFGSSDEEMEDADSDS---DDESGDEDDD 656


>TC222458 similar to UP|Q9ZVA0 (Q9ZVA0) F9K20.14 protein, partial (61%)
          Length = 507

 Score = 33.5 bits (75), Expect = 0.50
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = +1

Query: 10  REMGENGVVVPSCSFASHGGKGKGPLGRIIQQREKANVPSSAKKNQKRKCLQDLGTVLRN 69
           +E+ E      + + +SHGG          QQ+++  +P S  ++QKR+     G  LRN
Sbjct: 70  KEIAEGSSTTTTATRSSHGGDDHHHHHNQQQQQQQQQLPLSRYESQKRRDWNTFGQYLRN 249

Query: 70  DGPSI 74
             P +
Sbjct: 250 QRPPV 264


>TC227390 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetylase
           HD2-P39, partial (24%)
          Length = 808

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
 Frame = +1

Query: 482 KISSSAYRLRMSTVTKDDDECQSDM----EDYGSVDDELDDSDTCSC--GDDFESGSVDS 535
           K S+SA ++++    KD++E   D     +D+GS D+E++D+D+ S    DD E    ++
Sbjct: 121 KASASAKQVKIVEPKKDNEEDSDDDSDEDDDFGSSDEEMEDADSDSDDESDDKEDDDEET 300

Query: 536 NIRKLK 541
           + +  K
Sbjct: 301 HPKNKK 318


>TC210699 weakly similar to UP|O80701 (O80701) F8K4.15 protein, partial (5%)
          Length = 807

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 18/53 (33%), Positives = 29/53 (53%)
 Frame = -3

Query: 435 SERGNNGCKVSDLAKATQIAELNLASTTEELESLICSTLSSDITLFEKISSSA 487
           S+   N CK   +   T+ AE  L S T+ L+   C+T +   TLF K+S+++
Sbjct: 487 SKETTNFCK--KILSETKNAEAQLTSLTKPLDKRNCNTAALGTTLFSKLSATS 335


>AI736063 similar to GP|9758225|dbj receptor-protein kinase-like protein
           {Arabidopsis thaliana}, partial (14%)
          Length = 422

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 8/68 (11%)
 Frame = -3

Query: 327 KIHVALLTLLLSDIEVELSNGFAPHLDKSCNFLALLHSVE--SQEYSPDFWRR------S 378
           K+HV     LLS I+    + F PH  +  +FL+ LH+++   Q+   +FW+R       
Sbjct: 234 KVHV-----LLSHIDAF*VDLF-PHTHRQVSFLSFLHNIQLVKQDGDGEFWKRLLFRSGI 73

Query: 379 LNSLTWIE 386
           L +L WI+
Sbjct: 72  LEALVWIQ 49


>TC225868 UP|Q8LK24 (Q8LK24) SOS2-like protein kinase, complete
          Length = 2261

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 18/49 (36%), Positives = 28/49 (56%)
 Frame = +3

Query: 375  WRRSLNSLTWIEILRQVLVASGFGSKQGALRREALSKELNLLINYGISP 423
            WRR LNS++   +LR +L  S F S++G++ R    K      +YG+ P
Sbjct: 1305 WRRRLNSMSRRFLLR*MLFTS-FRSRRGSICRRCSRKRREKRKSYGLRP 1448


>CF922367 
          Length = 463

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 22/74 (29%), Positives = 35/74 (46%)
 Frame = -2

Query: 169 SNSKKSVRENNRSSKTATMNRMLKNKLQNKRNNLQDKRKLLMQRKAGESNQHVTRNQSLK 228
           S  K+  ++ N  SK+    +  K   Q+K    + KR+   +R+   S   + R Q  K
Sbjct: 222 SGRKQKEKKGNSQSKSGRKQKEKKENSQSKNGRKKKKRE---KRRKESS*SRIERKQ--K 58

Query: 229 EKCELSLDSEISEE 242
           +  E SLD  ISE+
Sbjct: 57  KCAERSLDRTISEQ 16


>TC211055 similar to PIR|T46125|T46125 calmodulin-binding heat-shock-like
           protein - Arabidopsis thaliana {Arabidopsis thaliana;} ,
           partial (19%)
          Length = 597

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 17/61 (27%), Positives = 30/61 (48%), Gaps = 15/61 (24%)
 Frame = +2

Query: 491 RMSTVTKDDDECQSDME---------------DYGSVDDELDDSDTCSCGDDFESGSVDS 535
           R  T+T+ +DE ++ ++               +YG+ DDE D++ T S G+     SVD 
Sbjct: 161 RQETLTRHNDEYKAALQRAKTLDVPHAYTPPSEYGTFDDEGDENSTRSQGESSNKSSVDE 340

Query: 536 N 536
           +
Sbjct: 341 S 343


>CO981852 
          Length = 589

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 12/22 (54%), Positives = 15/22 (67%)
 Frame = -1

Query: 61  QDLGTVLRNDGPSIGREFDYLP 82
           + LG  +R DGP +G EFD LP
Sbjct: 571 RQLGEPIREDGPILGMEFDSLP 506


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.315    0.132    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,629,467
Number of Sequences: 63676
Number of extensions: 665101
Number of successful extensions: 3505
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 3431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3495
length of query: 1041
length of database: 12,639,632
effective HSP length: 107
effective length of query: 934
effective length of database: 5,826,300
effective search space: 5441764200
effective search space used: 5441764200
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)