hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpf/mpf00484/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4257  ( 959 res)   mpf00484

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RRM      RNA recognition motif                          118.0    1.1e-30   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RRM        1/3     171   248 ..     1   121 []    31.3  0.00013
RRM        2/3     375   447 ..     1   121 []    50.4  2.3e-10
RRM        3/3     456   525 ..     1   121 []    36.2  4.5e-06

Alignments of top-scoring domains:
RRM: domain 1 of 3, from 171 to 248: score 31.3, E = 0.00013
                   *->tlfVgNLn..dppdvteedLrelFkevksvevfraeteskfGkvvsv
                      tl ++ L+++ ++++ e+ L   F              ++fG+v sv
   mKIAA4257   171    TLKISELGsqLSDEAVEDGLFHEF--------------KRFGDV-SV 202  

                   rivrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAl
                   +i +                      sg+G  +  aFV+F+ +edA++A 
   mKIAA4257   203 KISHLSG-------------------SGSGDER-VAFVNFRRPEDARAA- 231  

                   liealnaskGkeledgGrptlglrVe<-*
                      a +     +l  ++rp   l++e   
   mKIAA4257   232 -KHARG---RLVL--YDRP---LKIE    248  

RRM: domain 2 of 3, from 375 to 447: score 50.4, E = 2.3e-10
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                      tlf gNL  + +vte dLr++F               +fG +++v+i
   mKIAA4257   375    TLFLGNL--DITVTENDLRRAF--------------DRFGVITEVDI 405  

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                    r                         G+   ++F +Fe+ +   +A   
   mKIAA4257   406 KRPSR----------------------GQTSTYGFLKFENLDMSHRA--K 431  

                   ealnaskGkeledgGrptlglrVe<-*
                    a+    Gk +    +p   ++++   
   mKIAA4257   432 LAMS---GKII--IRNP---IKIG    447  

RRM: domain 3 of 3, from 456 to 525: score 36.2, E = 4.5e-06
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                      +l+Vg+L   p v    L + F               +fG+++ ++ 
   mKIAA4257   456    RLWVGGL--GPWVPLAALAREF--------------DRFGTIRTIDY 486  

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                   ++                               a++++e+ ++A +A   
   mKIAA4257   487 RKGDS---------------------------WAYIQYESLDAAHAA--W 507  

                   ealnaskGkeledgGrptlglrVe<-*
                    ++    G++l + +r+   lrV+   
   mKIAA4257   508 THMR---GFPLGGPDRR---LRVD    525  

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