hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpf/mpf00484/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4257  ( 959 res)   mpf00484

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SPOC     SPOC domain                                    174.0    2.4e-48   1
RRM_1    RNA recognition motif. (a.k.a. RRM, RBD, or     86.3    6.1e-22   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RRM_1      1/3     172   247 ..     1    74 []    11.9    0.011
RRM_1      2/3     376   446 ..     1    74 []    56.7    5e-13
RRM_1      3/3     457   524 ..     1    74 []    17.6   0.0025
SPOC       1/1     790   926 ..     1   131 []   174.0  2.4e-48

Alignments of top-scoring domains:
RRM_1: domain 1 of 3, from 172 to 247: score 11.9, E = 0.011
                   *->lfVgNLppdtteedLkd....lFskfGpiesikivrDttretgrsk.
                      l ++ L   +++e ++d+  + F+ fG++ s+ki++   +  g+  +
   mKIAA4257   172    LKISELGSQLSDEAVEDglfhEFKRFGDV-SVKISHL--SGSGSGDe 215  

                   GfaFVeFedeedAekAldalnGkelggrelrv<-*
                   ++aFV+F  +edA++A+ a     l +r+l++   
   mKIAA4257   216 RVAFVNFRRPEDARAAKHARGRLVLYDRPLKI    247  

RRM_1: domain 2 of 3, from 376 to 446: score 56.7, E = 5e-13
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      lf gNL   +te dL+++F  fG i++++i+r   ++ g++  ++F 
   mKIAA4257   376    LFLGNLDITVTENDLRRAFDRFGVITEVDIKR---PSRGQTSTYGFL 419  

                   eFedeedAekAldalnGkelggrelrv<-*
                   +Fe+ +   +A+ a+ Gk++  +++++   
   mKIAA4257   420 KFENLDMSHRAKLAMSGKIIIRNPIKI    446  

RRM_1: domain 3 of 3, from 457 to 524: score 17.6, E = 0.0025
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      l+Vg+L p +  + L + F  fG i  i+  +            a++
   mKIAA4257   457    LWVGGLGPWVPLAALAREFDRFGTIRTIDYRKG--------DSWAYI 495  

                   eFedeedAekAldalnGkelgg..relrv<-*
                   ++e+ ++A +A   + G+ lgg++r+lrv   
   mKIAA4257   496 QYESLDAAHAAWTHMRGFPLGGpdRRLRV    524  

SPOC: domain 1 of 1, from 790 to 926: score 174.0, E = 2.4e-48
                   *->WkGlLalksvadfpikahfvsGdilKeidekvldklLPdedtgp...
                      W+G+L lk+ ++fp ++h+++G      d +v+++lL +++tg++  
   mKIAA4257   790    WQGMLLLKN-SNFPSNMHLLQG------DLQVASSLLVEGSTGGkva 829  

                   qlritgRlrldqvkkylvklrisvtkPNevavvlflPssedisdvs....
                   ql+it+Rlrldq+k+++v++ri+v++PN++a++l++P+s d++++s++ +
   mKIAA4257   830 QLKITQRLRLDQPKLDEVTRRIKVAGPNGYAILLAVPGSSDSRSSSssat 879  

                   ....sedtnllrelvsYLksKqraGvislpergskq..ngrdlyifP<-*
                   +++  +++++lr+lvsYLk+Kq+aGvislp++g+k+++n+++l++fP   
   mKIAA4257   880 sdtaASTQRPLRNLVSYLKQKQAAGVISLPVGGNKDkeNTGVLHAFP    926  

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