hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj04284/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4256  ( 705 res)   mfj04284

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
S_TKc    Serine/Threonine protein kinases, catalytic    290.7    1.1e-82   1
TyrKc    Tyrosine kinase, catalytic domain               26.1    9.5e-13   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TyrKc      1/1       3   239 ..     1   280 []    26.1  9.5e-13
S_TKc      1/1       5   241 ..     1   231 []   290.7  1.1e-82

Alignments of top-scoring domains:
TyrKc: domain 1 of 1, from 3 to 239: score 26.1, E = 9.5e-13
                   *->ltlgkkLGeGaFGeVykGtlk.......ieVAVKtLkeda.....ke
                                       G l  +++ ++++VA+K ++ ++ +++ ++
   mKIAA4256     3    -----------------GDLLasdtvdsQKVAIKIVNREKlsesvLM 32   

                   eFlrEakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGd
                      rE+ i+k +  +Hp+++kL+ v   +       + l++v+E+++gG 
   mKIAA4256    33 KVEREIAILKLI--EHPHVLKLHDVYENK-------KYLYLVLEHVSGGE 73   

                   LldyLrknrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvge
                   L dyL k+++ l++++  +f  QI +  ++ +s+ + HRDL   N L++e
   mKIAA4256    74 LFDYLVKKGR-LTPKEARKFFRQIISALDFCHSHSICHRDLKPENLLLDE 122  

                   nkvvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEsl
                   ++ ++I+DFG++     d       +   ++   g+          PE++
   mKIAA4256   123 RNNIRIADFGMASLQVGD-------SLLETSC--GSP-----HYACPEVI 158  

                   kdgkFt.skSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkG
                   +  k+ + k DVWS GV L+ ++  G+ P  +      + +++le++k+G
   mKIAA4256   159 RGEKYDgRKADVWSCGVILFALL-VGALPFDD-----DNLRQLLEKVKRG 202  

                   yRlpkPendlpiSsvtCPdelYdlMlqCWaedPedRPtFselverl<-*
                        P+          P++  +l +   + d++ R t + + + +   
   mKIAA4256   203 -VFHMPHF--------IPPDCQSLLRGMIEVDAARRLTLEHIQKHI    239  

S_TKc: domain 1 of 1, from 5 to 241: score 290.7, E = 1.1e-82
                   *->YellkklGkGaFGkVylardkktgrlvAiKvik.........erilr
                                      la d+ + ++vAiK++++++ +++   +++r
   mKIAA4256     5    ---------------LLASDTVDSQKVAIKIVNreklsesvlMKVER 36   

                   EikiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgrr
                   Ei+iLk   HP++ kL+dv+e++++lylV+E+++G  G+Lfd+l+k+gr 
   mKIAA4256    37 EIAILKLiEHPHVLKLHDVYENkKYLYLVLEHVSG--GELFDYLVKKGR- 83   

                   glrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hvKl
                        l+++ear++frQi+saL+++Hs+ I+HRDLKPeN+LLd+++++ +
   mKIAA4256    84 -----LTPkEARKFFRQIISALDFCHSHSICHRDLKPENLLLDErnNIRI 128  

                   aDFGlArql......ttfvGTpeYmAPEvl...gYgkpavDiWSlGcily
                   aDFG+A +  +++   t +G+p+Y  PEv+++++Y+++++D+WS+G+il+
   mKIAA4256   129 ADFGMASLQvgdsllETSCGSPHYACPEVIrgeKYDGRKADVWSCGVILF 178  

                   ElltGkpPFp..qldlifkkig..........SpeakdLikklLvkdPek
                    ll+G  PF++++l ++++k++++  + ++  +p++ +L++++ ++d ++
   mKIAA4256   179 ALLVGALPFDddNLRQLLEKVKrgvfhmphfiPPDCQSLLRGMIEVDAAR 228  

                   Rlta.eaLedeldikaHPff<-*
                   Rlt + + +       H +    
   mKIAA4256   229 RLTLeHIQK-------HIWY    241  

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