hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj04284/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4256  ( 705 res)   mfj04284

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
Pkinase     Protein kinase domain                       288.9    6.4e-83   1
Pkinase_Tyr Protein tyrosine kinase                      54.5    2.9e-15   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
Pkinase_Tyr   1/1       3   239 ..     1   272 []    54.5  2.9e-15
Pkinase       1/1       5   241 ..     1   287 []   288.9  6.4e-83

Alignments of top-scoring domains:
Pkinase_Tyr: domain 1 of 1, from 3 to 239: score 54.5, E = 2.9e-15
                   *->lklgkkLGeGaFGeVykGtlkgsgegtkikVAVKtL.keigasseei
                                       G l  s+  + +kVA+K++++e + s++  
   mKIAA4256     3    -----------------GDLLASDTVDSQKVAIKIVnRE-KLSESV- 30   

                   eredFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGd
                    + +  rE++i+k +  Hp++++L+ v    ++     ly+V+E++ gG 
   mKIAA4256    31 -LMKVEREIAILKLI-EHPHVLKLHDVYEN-KKY----LYLVLEHVSGGE 73   

                   LldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcLV
                   L d+L k   +++Lt k+  +f +Qi +++++ +s+ + HRDL   N L+
   mKIAA4256    74 LFDYLVK---KGRLTPKEARKFFRQIISALDFCHSHSICHRDLKPENLLL 120  

                   senlvVKIsDFGLaRdiynddyYvrkkgggklPvkWmAPEslkygkF.ts
                   +e + ++I+DFG+a +   d+    ++           PE+++  k++  
   mKIAA4256   121 DERNNIRIADFGMASLQVGDSLL-ETSC---GSPHYACPEVIRGEKYdGR 166  

                   kSDVWSFGVlLWEiftlGeqPFYpgmsneevlellyedGyRLprPenCPd
                   k DVWS GV L+ ++  G+ P + +    ++le++ +    +p     P+
   mKIAA4256   167 KADVWSCGVILFALLV-GALP-FDDDNLRQLLEKVKRGVFHMPHFI--PP 212  

                   elYdlMlqCWaedPedRPtFselverL<-*
                   +  +l +   + d+++R t + ++ ++   
   mKIAA4256   213 DCQSLLRGMIEVDAARRLTLEHIQKHI    239  

Pkinase: domain 1 of 1, from 5 to 241: score 288.9, E = 6.4e-83
                   *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr
                                      +a +  ++++VA+Ki++++k ++++++   r
   mKIAA4256     5    ---------------LLASDTVDSQKVAIKIVNREKLSESVLMKVER 36   

                   rsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrlldLfdylse
                     Ei+ilk + Hp++++l+dv+e+k++lylVlE++ gG    +Lfdyl  
   mKIAA4256    37 --EIAILKLIEHPHVLKLHDVYENKKYLYLVLEHVSGG----ELFDYLV- 79   

                   trrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldengv
                     +kg+l  +++ea+k+++Qi+++l+++Hs++i+HRDLKPeN+Llde+++
   mKIAA4256    80 --KKGRL--TPKEARKFFRQIISALDFCHSHSICHRDLKPENLLLDERNN 125  

                   vdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvllggngygtkvD
                   +    +iaDFG A +     +s l t +G+p+Y+ PEv++g +++g+k+D
   mKIAA4256   126 I----RIADFGMASL--QvGDSlLETSCGSPHYACPEVIRGEKYDGRKAD 169  

                   vWSlGvilyelltGkpPFsgevqdsldqlqlirkilgpplefdspewdsi
                   vWS+Gvil+ ll G +PF+++     + +ql++k++++ ++ + + +   
   mKIAA4256   170 VWSCGVILFALLVGALPFDDD-----NLRQLLEKVKRGVFHMPHFIP--- 211  

                   srsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf<-*
                               +++++L+++++++D ++Rlt e+i +H w    
   mKIAA4256   212 ------------PDCQSLLRGMIEVDAARRLTLEHIQKHIWY    241  

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