hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg00605/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4254  ( 933 res)   mbg00605

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
C2       Protein kinase C conserved region 2 (CalB)      89.6    3.7e-22   1
C1       Protein kinase C conserved region 1 (C1) dom    74.9    9.6e-18   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
C1         1/1     126   175 ..     1    61 []    74.9  9.6e-18
C2         1/1     249   356 ..     1    92 []    89.6  3.7e-22

Alignments of top-scoring domains:
C1: domain 1 of 1, from 126 to 175: score 74.9, E = 9.6e-18
                   *->Hkfvfrtf.kptfCdvCrksiwgsfkqaaksqglrCseCkvkcHkkC
                      H+f+ ++ ++pt+C+ C+ ++wg+++q     g+rCseC+vkcH+kC
   mKIAA4254   126    HNFEVWSAtTPTYCYECEGLLWGLARQ-----GMRCSECGVKCHEKC 167  

                   aekvpaqshksglsC<-*
                   ++ ++a       +C   
   mKIAA4254   168 QDLLNA-------DC    175  

C2: domain 1 of 1, from 249 to 356: score 89.6, E = 3.7e-22
                   *->tLtvkiisArnLp........DPYVkvs......kTkvvkktlsgfN
                      ++t+++++A++L  +++++++DPYV+v+ ++++++Tk++ ++l   N
   mKIAA4254   249    KITITVVCAQGLQakdktgssDPYVTVQvgktkkRTKTIFGNL---N 292  

                   PvWnEesetFeFevpp..s.LeieVyDk.................dfiGr
                   PvW+E   +F+Fe+++++++++++V+D++++ +++ + + +++++df+G+
   mKIAA4254   293 PVWEE---KFHFECHNssDrIKVRVWDEdddiksrvkqrlkresdDFLGQ 339  

                   vtippnnahqhsadglihlsell.ggrh.kl<-*
                   ++i               +++l ++     +   
   mKIAA4254   340 TIIE--------------VRTLSgEMDVwYN    356  

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