hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg00605/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4254  ( 933 res)   mbg00605

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DUF1041  Domain of Unknown Function (DUF1041)           270.4    2.3e-77   2
C2       C2 domain                                      111.9    1.2e-29   1
C1_1     Phorbol esters/diacylglycerol binding domain    68.1    1.9e-16   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
C1_1       1/1     126   178 ..     1    55 []    68.1  1.9e-16
C2         1/1     250   341 ..     1    88 []   111.9  1.2e-29
DUF1041    1/2     565   669 ..     1   122 []   161.9    1e-44
DUF1041    2/2     790   882 ..     1   122 []   111.0  2.3e-29

Alignments of top-scoring domains:
C1_1: domain 1 of 1, from 126 to 178: score 68.1, E = 1.9e-16
                   *->HhFvhrwnfkqptfCdhCgellwgslgkqGlkCswCklnvHkrChek
                      H+F++  +   pt+C  C+ llwg l++qG++Cs+C++++H++C+ +
   mKIAA4254   126    HNFEVW-SATTPTYCYECEGLLWG-LARQGMRCSECGVKCHEKCQDL 170  

                   VppeCgcg<-*
                   +++ C      
   mKIAA4254   171 LNADCLQR    178  

C2: domain 1 of 1, from 250 to 341: score 111.9, E = 1.2e-29
                   *->LrVtvieAknLppkDfkngksDPYVkvslggdkkdqkkkTkvikktl
                      +++tv++A++L +kD k+g+sDPYV+v++g+    +kk+Tk+i ++l
   mKIAA4254   250    ITITVVCAQGLQAKD-KTGSSDPYVTVQVGK----TKKRTKTIFGNL 291  

                   NPvWNEtFtFevpppdlqetLeieVyDydrfgr...........ddflGe
                   NPvW+E+F+Fe  +++ ++ +++ V+D+d + +++ +++ ++++ddflG+
   mKIAA4254   292 NPVWEEKFHFE-CHNSSDR-IKVRVWDEDDDIKsrvkqrlkresDDFLGQ 339  

                   vs<-*
                   ++   
   mKIAA4254   340 TI    341  

DUF1041: domain 1 of 2, from 565 to 669: score 161.9, E = 1e-44
                   *->ktvvkdclkaaarvwydfifenakieermekqveqpgpqraPvvpCI
                      ++vvkdc+ka+++++y++if+n++++++ ++q+        P     
   mKIAA4254   565    SQVVKDCVKACLNSTYEYIFNNCHDLYSHQYQLQE-----QPL---- 602  

                   LMNNvQglrvqlekkledmGGikLielvisvLkelqeklnevLnqFpqel
                         +++++  ++l+++  +kLi+l++s+++e+++++++vL qFpqel
   mKIAA4254   603 ------EEPGPSIRNLDFW--PKLITLIVSIIEEDKNSYTPVLSQFPQEL 644  

                   nlgkesAedlwslfavdldsaleEq<-*
                   n+gk+sAe +w+lfa+d+++aleE+   
   mKIAA4254   645 NVGKVSAEVMWHLFAQDMKYALEEH    669  

DUF1041: domain 2 of 2, from 790 to 882: score 111.0, E = 2.3e-29
                   *->ktvvkdclkaaarvwydfifenakieermekqveqpgpqraPvvpCI
                      kt+ k+++++a++ ++ f+ ++   +er               +pCI
   mKIAA4254   790    KTIGKVLMQYADILSKNFPAYCT--KER---------------LPCI 819  

                   LMNNvQglrvqlekkledmGGikLielvisvLkelqeklnevLnqFpqel
                   LMNN Q+lrvqlek++e+mGG++L+ ++++ Lkelq+kln+vL+      
   mKIAA4254   820 LMNNMQQLRVQLEKMFEAMGGKELDSEAADSLKELQVKLNTVLD------ 863  

                   nlgkesAedlwslfavd..ldsaleEq<-*
                           +l+++f++  +l   ++     
   mKIAA4254   864 --------ELSMVFGNRcgLMNVFDKW    882  

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