hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mtg/mtg01513/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4252  ( 2309 res)   mtg01513

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TBOX     Domain first found  in the mice T locus (Bra   348.2   5.2e-100   1
HLH      helix loop helix domain                         37.5    1.8e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TBOX       1/1      88   279 ..     1   206 []   348.2 5.2e-100
HLH        1/1    2212  2263 ..     1    61 []    37.5  1.8e-06

Alignments of top-scoring domains:
TBOX: domain 1 of 1, from 88 to 279: score 348.2, E = 5.2e-100
                   *->gikVsLedskeLWkkFhelgTEMIvTKskGRRMFPtlkvkvsGLDPn
                      +i+V+L++    W++Fh+  TEMI TK+ GRRMFP +++ ++GLD n
   mKIAA4252    88    KITVTLDN-NSMWNEFHNRSTEMILTKQ-GRRMFPYCRYWITGLDSN 132  

                   alYsvlldlvpvDdkrhRYkFnnFngkWvvaGKaephlpdprvyvHPdSp
                    +Y++ +d+ pvD+  hRYk+n+    W+++GKaeph    rv++HP Sp
   mKIAA4252   133 LKYILVMDISPVDS--HRYKWNG--RWWEPSGKAEPHIL-GRVFIHPESP 177  

                   atGahWMkqpVsFdKvKLTNnqldenghiqmIiLnSMHKYqPRlHivevd
                    tG  WM qpVsF K+KLTNn+ld++ghi   iL+SMH+Y PRlH+v + 
   mKIAA4252   178 STGHYWMHQPVSFYKLKLTNNTLDQEGHI---ILHSMHRYLPRLHLVPAE 224  

                   desklypsqpsnqi.plvktftFpETeFIaVTAYQNqkITkLKIdnNPFA
                          + +  ++++ v+tftFp+TeF aVTAYQN +IT+LKId+NPFA
   mKIAA4252   225 KA----TEVIQLNGpG-VHTFTFPQTEFFAVTAYQNIQITQLKIDYNPFA 269  

                   KGFRdngrrr<-*
                   KGFRd+g +    
   mKIAA4252   270 KGFRDDGLSS    279  

HLH: domain 1 of 1, from 2212 to 2263: score 37.5, E = 1.8e-06
                   *->narERrlrRRekiNeqafdeLrslvPtlpkgggnskKlsKasiLrlA
                      +a ER  rRR ++++  f++L+  +  l+     s+K+sK  iL +A
   mKIAA4252  2212    TANER--RRRGEMRD-LFEKLKITLGLLH-----SSKVSKSLILNRA 2250 

                   ieYIrksLqeqlqe<-*
                    + I + L +q ++   
   mKIAA4252  2251 FSEI-QGLTDQADK    2263 

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