hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mtg/mtg01513/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4252  ( 2309 res)   mtg01513

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
T-box    T-box                                          365.6   5.3e-106   1
HLH      Helix-loop-helix DNA-binding domain             50.3    4.2e-11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
T-box      1/1      90   275 ..     1   195 []   365.6 5.3e-106
HLH        1/1    2207  2258 ..     1    53 []    50.3  4.2e-11

Alignments of top-scoring domains:
T-box: domain 1 of 1, from 90 to 275: score 365.6, E = 5.3e-106
                   *->qvsLedreLWkkFhelgTEMIITKsGRRMFPtlkvsvsGLdPnakYs
                      +v+L++   W++Fh+  TEMI TK+GRRMFP +++ ++GLd n kY+
   mKIAA4252    90    TVTLDNNSMWNEFHNRSTEMILTKQGRRMFPYCRYWITGLDSNLKYI 136  

                   vlLDfvPvDdkRYKYafnngeWvvaGKAEphlPsRvYiHPDSPatGahWM
                   + +D+ PvD++RYK  +n+  W+++GKAEph   Rv+iHP SP tG  WM
   mKIAA4252   137 LVMDISPVDSHRYK--WNGRWWEPSGKAEPHILGRVFIHPESPSTGHYWM 184  

                   kqpVSFdKvKLTNntglEDgnGhmIiLNSMHKYqPRlHIVrvddesslhv
                    qpVSF K+KLTNnt l D+ Gh IiL+SMH+Y PRlH+V + +   +  
   mKIAA4252   185 HQPVSFYKLKLTNNT-L-DQEGH-IILHSMHRYLPRLHLVPAEKATEVI- 230  

                   sqpvlsqsrvqTfsFPETqFIAVTAYQNeeITkLKIdnNPFAKGFRDa<-
                       l   +v+Tf+FP+T+F AVTAYQN +IT+LKId+NPFAKGFRD+  
   mKIAA4252   231 ---QLNGPGVHTFTFPQTEFFAVTAYQNIQITQLKIDYNPFAKGFRDD   275  

                   *
                    
   mKIAA4252     -   -    

HLH: domain 1 of 1, from 2207 to 2258: score 50.3, E = 4.2e-11
                   *->rRrahnarERrRRdriNdafeeLrellPtlapskKlsKaeiLrlAve
                       Rr+h+a ERrRR +++d fe+L+  l   ++s K+sK  iL +A +
   mKIAA4252  2207    YRRTHTANERRRRGEMRDLFEKLKITLGL-LHSSKVSKSLILNRAFS 2252 

                   YIksLq<-*
                    I+ L+   
   mKIAA4252  2253 EIQGLT    2258 

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