hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj01022/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4251  ( 630 res)   mfj01022

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
CRAL_TRIO   CRAL/TRIO domain                            159.7    5.1e-44   1
MSF1        MSF1-like conserved region                   70.3      4e-17   1
CRAL_TRIO_N CRAL/TRIO, N-terminus                        51.0    2.6e-11   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
MSF1          1/1       1    88 [.     1   164 []    70.3    4e-17
CRAL_TRIO_N   1/1     161   228 ..     1    89 []    51.0  2.6e-11
CRAL_TRIO     1/1     243   431 ..     1   188 []   159.7  5.1e-44

Alignments of top-scoring domains:
MSF1: domain 1 of 1, from 1 to 88: score 70.3, E = 4e-17
                   *->eqVtaAfwrrYPNCPysphVisvDVleRkvddedGkVLhTeRlltkq
                                                        +            
   mKIAA4251     1    -------------------------------L--NS----------- 3    

                   grlPrWlkkVligvadtvYvlEeSvvDpkkrtLtleTrNltfssrlsVdE
                           +                    +rtL++e++N+tfs+r+ ++E
   mKIAA4251     4 --------R--------------------DRTLHIEAHNETFSNRVIIHE 25   

                   rctYtpHpeNpsnwTvfkQeAsissvkgslfglsskvEkwslkrFseNak
                   +c+Yt+HpeN+ +wT+f+Q+As++ +k+ +fg++s vEk+++k++++N+k
   mKIAA4251    26 HCCYTVHPENE-DWTCFEQSASLD-IKS-FFGFESTVEKIAMKHYTSNIK 72   

                   KGreGlEyvleefleee<-*
                   KG+e++Ey+l++ leee   
   mKIAA4251    73 KGKEIIEYYLRQ-LEEE    88   

CRAL_TRIO_N: domain 1 of 1, from 161 to 228: score 51.0, E = 2.6e-11
                   *->gtpgnltpeqeraykskLkeetLkelryelseknkteeldkgykerl
                      +++g ltp         L+e+ L +lr+ l+           +k+++
   mKIAA4251   161    RYLGDLTP---------LQESCLIRLRQWLQ---------ETHKGKI 189  

                   kawldDatlLRFLRARKFdvaaAiemltktlkWRrEfGvnei<-*
                      + D++ LRFLRAR+F++++A e    +l WR+++ v+ i   
   mKIAA4251   190 ---PKDEHILRFLRARDFNIDKAREIMCQSLTWRKQHQVDYI    228  

CRAL_TRIO: domain 1 of 1, from 243 to 431: score 159.7, E = 5.1e-44
                   *->pqfihgtdkdGrpvylekrGklntkvmlkittlhrmlkklvyeverl
                       + +h++dkdGrp+y++++G+ +tk++ + +  ++ l   v+++ + 
   mKIAA4251   243    AGGWHHHDKDGRPLYVLRLGQMDTKGLVR-ALGEEALLRYVLSINEE 288  

                   tlyrlpaasrklgtlingsctvfDlkGvsmssmaspvlsvlkkvinilqd
                    l r ++ +  +g +i++++  +Dl+G++m+++++p++  l+ +i+++++
   mKIAA4251   289 GLRRCEENTKVFGRPISSWTCLVDLEGLNMRHLWRPGVKALLRIIEVVEA 338  

                   yYPErlgkfylinaPwlFstvyklIKpFLDektrsKifvlGss.Ykee..
                   +YPE+lg++++ +aP++F+++++l++pF+D+ tr K+ ++ +++Y+++++
   mKIAA4251   339 NYPETLGRLLILRAPRVFPVLWTLVSPFIDDNTRRKFLIYAGNdYQGPgg 388  

                   LlkhipaenLPakfGGtlktkydkc.gvwlsdvgpwrdeeqigfe<-*
                   Ll +i++e++P+++ G++  + d+++g +++++ ++  ee ++++   
   mKIAA4251   389 LLDYIDKEIIPDFLSGEC--MCDVPeGGLVPKSLYRTAEELENED    431  

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