hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpj/mpj00429/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4250  ( 239 res)   mpj00429

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BTB      Broad-Complex, Tramtrack and Bric a brac        75.9    4.9e-18   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BTB        1/1      49   151 ..     1   114 []    75.9  4.9e-18

Alignments of top-scoring domains:
BTB: domain 1 of 1, from 49 to 151: score 75.9, E = 4.9e-18
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                       +v+l+vgg         + f +   + +L++    +  F+ ++   
   mKIAA4250    49    KWVRLNVGG---------TYFLT--TRQTLCRD---PKSFLYRLCQa 81   

                   ............ieldDeallievspeaFralLnflYt.kldlpeedven
                   +++ ++++++++ +l+D      ++p+ F+ +Ln+l+++kl ++++  + 
   mKIAA4250    82 dpdldsdkdetgAYLID------RDPTYFGPVLNYLRHgKLVINKD--LA 123  

                   veelLelAdfldSYGqip.lvelCeefllknl<-*
                    e++Le+A+f+    +i++l++l+++++ ++    
   mKIAA4250   124 EEGVLEEAEFY----NITsLIKLVKDKIRERD    151  

//