hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpj/mpj00429/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4250  ( 239 res)   mpj00429

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
K_tetra  K+ channel tetramerisation domain              115.6    9.7e-31   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
K_tetra    1/1      51   143 ..     1   102 []   115.6  9.7e-31

Alignments of top-scoring domains:
K_tetra: domain 1 of 1, from 51 to 143: score 115.6, E = 9.7e-31
                   *->vrLNVGGkrFeTsksTLtrfkPdTlLgrllktdsheailrlcdfydd
                      vrLNVGG+ F T+++TL+r  P ++L rl++ d       ++d+++d
   mKIAA4250    51    VRLNVGGTYFLTTRQTLCRD-PKSFLYRLCQAD------PDLDSDKD 90   

                   dtnEyFFDRsPkhFetILnfYRtGdGkLhrp.evcldsfleEleFyglde
                   +t++y +DR+P++F ++Ln++R+  GkL   +++ ++ +leE+eFy++++
   mKIAA4250    91 ETGAYLIDRDPTYFGPVLNYLRH--GKLVINkDLAEEGVLEEAEFYNITS 138  

                   laielC<-*
                   l i l    
   mKIAA4250   139 L-IKLV    143  

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