hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj01240/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4249  ( 609 res)   mfj01240

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BTB      Broad-Complex, Tramtrack and Bric a brac       120.6    1.7e-31   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BTB        1/1      62   159 ..     1   114 []   120.6  1.7e-31

Alignments of top-scoring domains:
BTB: domain 1 of 1, from 62 to 159: score 120.6, E = 1.7e-31
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                      cDvt+v+++          +++a  H++vLaac   SpyF+a+f+++
   mKIAA4249    62    CDVTIVAED---------MEIPA--HRVVLAAC---SPYFHAMFTGe 94   

                   ........ieldDeallievspeaFralLnflYt.kldlpeedvenveel
                    ++++ +++ +++      v+  ++r+l+++ Yt ++ ++ee   nv+ l
   mKIAA4249    95 msesrakrVRIKE------VDGWTLRMLVDYVYTaEIQVTEE---NVQVL 135  

                   LelAdfldSYGqip.lvelCeefllknl<-*
                   L +A +l    q++++++ C+efl+++l   
   mKIAA4249   136 LPAAGLL----QLQdVKKTCCEFLESQL    159  

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