hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mfj/mfj01240/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4249 ( 609 res) mfj01240 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Kelch_1 Kelch motif 338.8 6e-98 6 BACK BTB And C-terminal Kelch 189.7 4.7e-53 1 BTB BTB/POZ domain 147.7 2e-40 1 Kelch_2 Kelch motif 123.2 4.8e-33 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- BTB 1/1 52 159 .. 1 135 [] 147.7 2e-40 BACK 1/1 164 266 .. 1 103 [] 189.7 4.7e-53 Kelch_1 1/6 302 346 .. 1 45 [] 26.4 0.00068 Kelch_2 1/6 299 346 .. 1 54 [] 5.7 44 Kelch_1 2/6 348 393 .. 1 45 [] 60.2 4.6e-14 Kelch_2 2/6 348 393 .. 1 54 [] 20.1 0.052 Kelch_1 3/6 395 440 .. 1 45 [] 65.7 9.9e-16 Kelch_2 3/6 395 440 .. 1 54 [] 22.8 0.008 Kelch_1 4/6 442 489 .. 1 45 [] 66.5 5.8e-16 Kelch_2 4/6 442 489 .. 1 54 [] 24.3 0.003 Kelch_1 5/6 491 536 .. 1 45 [] 70.1 4.7e-17 Kelch_2 5/6 491 536 .. 1 54 [] 35.6 1.2e-06 Kelch_1 6/6 538 583 .. 1 45 [] 65.0 1.6e-15 Kelch_2 6/6 538 583 .. 1 54 [] 21.4 0.021 Alignments of top-scoring domains: BTB: domain 1 of 1, from 52 to 159: score 147.7, E = 2e-40 *->lnelreqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal +nelr q lcDVt+v++d +++AH++vLaacSpYF+a+ mKIAA4249 52 MNELRSQNLLCDVTIVAED--------MEIPAHRVVLAACSPYFHAM 90 FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks Ftg ++es ++ +++v+ ++++l+++ Yt+e+++t mKIAA4249 91 FTGE------MSESRAK-RVRIKEVDGWTLRMLVDYVYTAEIQVT----- 128 PssckseenvedlLalAadllqipslvdkCeefliksl<-* eenv+ lL +A llq++++++ C+efl +l mKIAA4249 129 ------EENVQVLLPAA-GLLQLQDVKKTCCEFLESQL 159 BACK: domain 1 of 1, from 164 to 266: score 189.7, E = 4.7e-53 *->CLgIrrfAdaygceeLaeaAdrfilqnFleVakseEFlqLskeqLie CLgIr fAd+++c++L+++A+ +++q+F++V+ seEFl+L eq+++ mKIAA4249 164 CLGIRAFADMHACTDLLNKANTYAEQHFADVVLSEEFLNLGIEQVCS 210 lLssDeLnVpsEeeVfeAvmrWvkhdvenRkkhlpeLLshVRLpLLspky l+ssD+L++ sEe+VfeAv++Wv+hd++ R++ +++L++hVRLpLL+++y mKIAA4249 211 LISSDKLTISSEEKVFEAVIAWVNHDKDVRQEFMARLMEHVRLPLLPREY 260 Llevve<-* L+++ve mKIAA4249 261 LVQRVE 266 Kelch_1: domain 1 of 6, from 302 to 346: score 26.4, E = 0.00068 *->pRsgagvvvldgkiYviGGydgqslnsvevYDpetntWtklpsmp<- + + + l ++ v+GG+ +++ +sve+YD ++ +W++++++p mKIAA4249 302 RTRLRTPMNLPKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELP 346 * mKIAA4249 - - Kelch_2: domain 1 of 6, from 299 to 346: score 5.7, E = 44 *->pryphasvvp...ggklyvvGGsfkgnrgtgngdesssdllvldpet ++++ +++p + ++vvGG + +++++ ++d+++ mKIAA4249 299 KSVRTRLRTPmnlPKLMVVVGGQ---------APKAIRSVECYDFKE 336 nvWeklpalp<-* ++W+ ++ lp mKIAA4249 337 ERWHQVAELP 346 Kelch_1: domain 2 of 6, from 348 to 393: score 60.2, E = 4.6e-14 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +R++ag+v++ g+++++GG++g+ ++++v++YDp++++Wt +++m+ mKIAA4249 348 RRCRAGMVYMAGLVFAVGGFNGsLRVRTVDSYDPVKDQWTSVANMR 393 -* mKIAA4249 - - Kelch_2: domain 2 of 6, from 348 to 393: score 20.1, E = 0.052 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r++ +v + g ++ vGG+ ng+++ +++ +dp + +W mKIAA4249 348 RRCRAGMVYMAGLVFAVGGF--------NGSLRVRTVDSYDPVKDQW 386 eklpalp<-* + ++ + mKIAA4249 387 TSVANMR 393 Kelch_1: domain 3 of 6, from 395 to 440: score 65.7, E = 9.9e-16 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +Rs g++vl+g++Y++GG+dg++ l+sve+Y+ ++n+W +++m+ mKIAA4249 395 RRSTLGAAVLNGLLYAVGGFDGsTGLSSVEAYNIKSNEWFHVAPMN 440 -* mKIAA4249 - - Kelch_2: domain 3 of 6, from 395 to 440: score 22.8, E = 0.008 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r+ ++v++g ly vGG+ +g+ +s++ ++ ++n+W mKIAA4249 395 RRSTLGAAVLNGLLYAVGGF--------DGSTGLSSVEAYNIKSNEW 433 eklpalp<-* ++++ mKIAA4249 434 FHVAPMN 440 Kelch_1: domain 4 of 6, from 442 to 489: score 66.5, E = 5.8e-16 *->pRsgagvvvldgkiYviGGydg...qslnsvevYDpetntWtklpsm +Rs++gv v++g++Y++GGydg ++q+l++ve+Y+ + n+Wt++++m mKIAA4249 442 RRSSVGVGVVGGLLYAVGGYDGasrQCLSTVECYNATANEWTYIAEM 488 p<-* + mKIAA4249 489 S 489 Kelch_2: domain 4 of 6, from 442 to 489: score 24.3, E = 0.003 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r+++ + v+gg ly vGG+ +g +s++ +++ n+W mKIAA4249 442 RRSSVGVGVVGGLLYAVGGY------DGASRQCLSTVECYNATANEW 482 eklpalp<-* ++++ + mKIAA4249 483 TYIAEMS 489 Kelch_1: domain 5 of 6, from 491 to 536: score 70.1, E = 4.7e-17 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +Rsgagv vl++++Y++GG+dg+ +svevYDp+tn W+++++m+ mKIAA4249 491 RRSGAGVGVLNNLLYAVGGHDGpLVRKSVEVYDPTTNAWRQVADMN 536 -* mKIAA4249 - - Kelch_2: domain 5 of 6, from 491 to 536: score 35.6, E = 1.2e-06 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r++ + v+++ ly vGG+ +g+++ ++ v+dp tn+W mKIAA4249 491 RRSGAGVGVLNNLLYAVGGH--------DGPLVRKSVEVYDPTTNAW 529 eklpalp<-* + ++++ mKIAA4249 530 RQVADMN 536 Kelch_1: domain 6 of 6, from 538 to 583: score 65.0, E = 1.6e-15 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< +R++agv++++g++Yv+GG dg+ l sve+Y+p+t++Wt ++s + mKIAA4249 538 CRRNAGVCAVNGLLYVVGGDDGsCNLASVEYYNPTTDKWTVVSSCM 583 -* mKIAA4249 - - Kelch_2: domain 6 of 6, from 538 to 583: score 21.4, E = 0.021 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r + ++ ++g lyvvGG +g++ + ++ +++p t +W mKIAA4249 538 CRRNAGVCAVNGLLYVVGGD--------DGSCNLASVEYYNPTTDKW 576 eklpalp<-* + +++ mKIAA4249 577 TVVSSCM 583 //