hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj00143/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4248  ( 1059 res)   mfj00143

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C2H2 zinc finger                                     70.7    1.9e-16   5
HOX      Homeodomain                                     26.3    0.00063   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ZnF_C2H2   1/5     245   269 ..     1    23 []    16.6      3.6
ZnF_C2H2   2/5     305   329 ..     1    23 []    21.0     0.16
ZnF_C2H2   3/5     410   434 ..     1    23 []    14.5      7.3
HOX        1/1     865   939 ..     1    63 []    26.3  0.00063
ZnF_C2H2   4/5     951   973 ..     1    23 []    18.1      1.2
ZnF_C2H2   5/5    1019  1042 ..     1    23 []    22.0    0.082

Alignments of top-scoring domains:
ZnF_C2H2: domain 1 of 5, from 245 to 269: score 16.6, E = 3.6
                   *->ykCpigCgksfssk.aLkrHmr..vH<-*
                      ++C + C+  + +  +L+ Hm ++ H   
   mKIAA4248   245    FRCRQ-CSAAYDTLvELTVHMNetGH    269  

ZnF_C2H2: domain 2 of 5, from 305 to 329: score 21.0, E = 0.16
                   *->ykCpigCgksfssk.aLkrHmr..vH<-*
                      +kC + Cg sf s ++L  Hm +++H   
   mKIAA4248   305    LKCMF-CGDSFDSLqDLSVHMIktKH    329  

ZnF_C2H2: domain 3 of 5, from 410 to 434: score 14.5, E = 7.3
                   *->ykCpigCgksfssk.aLkrHmr..vH<-*
                      +kC + Cg s  + ++L+ Hm+ + H   
   mKIAA4248   410    LKCME-CGSSHDTLqQLTTHMMvtGH    434  

HOX: domain 1 of 1, from 865 to 939: score 26.3, E = 0.00063
                   *->krrkRts.ftpeQleeLEkeFeknp...........YPsreereeLA
                      kr+ R+s+++p+ l +L++ F+ +  ++++++   + + ++er +++
   mKIAA4248   865    KRKGRQSnWNPQHLLILQAQFASSLfqtsegkyllsDLGPQERMQIS 911  

                   keLgLterqVkvWFQNRRakwkrqekkk<-*
                   k +gL+ + +  W  N  + +++    k   
   mKIAA4248   912 KFTGLSMTTISHWLANVKYQLRKTGGTK    939  

ZnF_C2H2: domain 4 of 5, from 951 to 973: score 18.1, E = 1.2
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C+  C  +f++++ ++ H+ +H   
   mKIAA4248   951    FYCSD-CASQFRTPsTYISHLESH    973  

ZnF_C2H2: domain 5 of 5, from 1019 to 1042: score 22.0, E = 0.082
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      +kC++ C ++f sk+a k H+ ++H   
   mKIAA4248  1019    FKCKL-CRRTFVSKhAVKLHLSkTH    1042 

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