hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj00143/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4248  ( 1059 res)   mfj00143

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C2H2  Zinc finger, C2H2 type                          66.0      8e-16   5
Homeobox Homeobox domain                                 -2.0      0.009   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C2H2    1/5     245   269 ..     1    24 []    17.5     0.32
zf-C2H2    2/5     305   329 ..     1    24 []    16.2      0.8
zf-C2H2    3/5     410   434 ..     1    24 []    11.2      8.2
Homeobox   1/1     867   934 ..     1    57 []    -2.0    0.009
zf-C2H2    4/5     951   973 ..     1    24 []    21.7    0.018
zf-C2H2    5/5    1019  1042 ..     1    24 []    20.6    0.036

Alignments of top-scoring domains:
zf-C2H2: domain 1 of 5, from 245 to 269: score 17.5, E = 0.32
                   *->ykCpfdCgksFsrksnLkrHlrt..H<-*
                      ++C  +C  ++ +  +L+ H++ ++H   
   mKIAA4248   245    FRCR-QCSAAYDTLVELTVHMNEtgH    269  

zf-C2H2: domain 2 of 5, from 305 to 329: score 16.2, E = 0.8
                   *->ykCpfdCgksFsrksnLkrHlrt..H<-*
                       kC   Cg sF +  +L  H+ +++H   
   mKIAA4248   305    LKCM-FCGDSFDSLQDLSVHMIKtkH    329  

zf-C2H2: domain 3 of 5, from 410 to 434: score 11.2, E = 8.2
                   *->ykCpfdCgksFsrksnLkrHlrt..H<-*
                       kC  +Cg s  +  +L++H+++++H   
   mKIAA4248   410    LKCM-ECGSSHDTLQQLTTHMMVtgH    434  

Homeobox: domain 1 of 1, from 867 to 934: score -2.0, E = 0.009
                   *->rrkRTtftpeQleeLEkeFq...........knrYPsreeReeLAkk
                      + +  +  p+ l++L++ F+++  ++++++   + + ++eR +++k 
   mKIAA4248   867    KGRQSNWNPQHLLILQAQFAsslfqtsegkyLLSDLGPQERMQISKF 913  

                   LgLterqVkvWFQNRRaKwKk<-*
                   +gL+ + +  W  N ++  +k   
   mKIAA4248   914 TGLSMTTISHWLANVKYQLRK    934  

zf-C2H2: domain 4 of 5, from 951 to 973: score 21.7, E = 0.018
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      + C+ dC   F+++s++ +Hl +H   
   mKIAA4248   951    FYCS-DCASQFRTPSTYISHLESH    973  

zf-C2H2: domain 5 of 5, from 1019 to 1042: score 20.6, E = 0.036
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      +kC+  C ++F +k+  k Hl ++H   
   mKIAA4248  1019    FKCK-LCRRTFVSKHAVKLHLSKtH    1042 

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