hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj16277/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4247  ( 326 res)   mfj16277

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PAP2     PAP2 superfamily                                70.3    4.1e-17   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PAP2       1/1     128   281 ..     1   176 []    70.3  4.1e-17

Alignments of top-scoring domains:
PAP2: domain 1 of 1, from 128 to 281: score 70.3, E = 4.1e-17
                   *->aalallfalvasallnglaylKllfgrpRAPhflavcqpdwgdstcs
                      ++++++f+l+a+ +++ +   + ++g++  P+fl vcqp     +c 
   mKIAA4247   128    FIGVFAFGLFATDIFVNA--GQVVTGHLT-PYFLTVCQPNYTSTDCR 171  

                   dlwyeelyglefycmagspgldridlfgsvlltsafalvseggpSFPSGH
                    ++  +                    ++   +t++ +++  +++SFPS H
   mKIAA4247   172 AHQQFI--------------------NNGNICTGDLEVIEKARRSFPSKH 201  

                   aafaaaaalflalylprrlstls.rllrlllgllllllallvglSRvylg
                   aa++ + al++  y+ + + t+s+rl++++l l  l  a+l+gl Rv+ +
   mKIAA4247   202 AALSIYSALYATMYITSTIKTKSsRLAKPVLCLGTLCTAFLTGLNRVSEY 251  

                   vHypsDVlaGallGaliallvllfvrrlld<-*
                     + sDV+aG++lG+++al+    v ++++   
   mKIAA4247   252 RNHCSDVIAGFILGTAVALFLGMCVVHNFR    281  

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