hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/msj/msj08227/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA4246  ( 602 res)   msj08227

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
GBP      Guanylate-binding protein, N-terminal domain   581.4   5.8e-171   1
GBP_C    Guanylate-binding protein, C-terminal domain   559.2   2.7e-164   1
MMR_HSR1 GTPase of unknown function                     -22.6       0.79   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
MMR_HSR1   1/1      52   145 ..     1   140 []   -22.6     0.79
GBP        1/1      31   293 ..     1   289 []   581.4 5.8e-171
GBP_C      1/1     295   591 ..     1   305 []   559.2 2.7e-164

Alignments of top-scoring domains:
MMR_HSR1: domain 1 of 1, from 52 to 145: score -22.6, E = 0.79
                   *->lrvaivGrPNVGKSTLiNaLtgkkraiVsdyPGtTrdp.negrvel.
                      + vaivG+   GKS L+N+L+g    +++   G T+  ++ g++ + 
   mKIAA4246    52    VVVAIVGLYRTGKSYLMNKLAG---KRTGFSLGSTVQShTKGIWMWc 95   

                   ......dgrqiilvDTPGiiegaskgegelgertleaieeaDlilfVvDa
                    +++++ g+ ++l+DT G+                             D+
   mKIAA4246    96 vphpkkAGQTLVLLDTEGL----------------------------EDV 117  

                   segltedytieeDleiadllydeerernleltLqelekkgkPvilvlNKi
                    +g++      +D  i+ l                  ++     +++N i
   mKIAA4246   118 EKGDN-----QNDCWIFAL----------------AVLLS--STFIYNSI 144  

                   D<-*
                       
   mKIAA4246   145 G    145  

GBP: domain 1 of 1, from 31 to 293: score 581.4, E = 5.8e-171
                   *->dgqlelNeeALeiLLlsesaitqpVvVVaivGlyRtGKSfLmNkLag
                      + ql++N+eAL+iL    saitqpVvVVaivGlyRtGKS+LmNkLag
   mKIAA4246    31    EAQLVINQEALRIL----SAITQPVVVVAIVGLYRTGKSYLMNKLAG 73   

                   YlynkdssdWlggnsekntGFslgsTveseTkGIwmWcvpflidhpnkpe
                                   k+tGFslgsTv+s+TkGIwmWcvp    hp+k  
   mKIAA4246    74 ----------------KRTGFSLGSTVQSHTKGIWMWCVP----HPKKAG 103  

                   vtLvLLDTeGlgDveksdnkndawIFALavLLSStfVYNsmgtIneqaLd
                   +tLvLLDTeGl+Dvek+dn+nd+wIFALavLLSStf+YNs+gtIn+qa+d
   mKIAA4246   104 QTLVLLDTEGLEDVEKGDNQNDCWIFALAVLLSSTFIYNSIGTINQQAMD 153  

                   qLhlVTELTelIRakssPdegrvadssefvsfFPdfvWtvRDFsLeLeld
                   qLh+VTELT+lI++kssPd+++++ds++fv+fFP+fvWt+RDFsLeLe++
   mKIAA4246   154 QLHYVTELTDLIKSKSSPDQSGIDDSANFVGFFPTFVWTLRDFSLELEVN 203  

                   ggaitgdeyLenaLklsqgqheelqnsNelRecIrkfFpkrkCFvfdrPg
                   g+++t+deyLe +L l++g +++++++Ne+R+cIrkfFpkrkCF+fdrP+
   mKIAA4246   204 GKPVTSDEYLEHSLTLKKGADKKTKSFNEPRLCIRKFFPKRKCFIFDRPA 253  

                   lkkkllpqleelredeLdpeFkeqldafcsyifspeskvktl<-*
                   ++k+l  +le+lre+eL  eF+eq+++f+syi+s +s vktl   
   mKIAA4246   254 QRKQL-SKLETLREEELCGEFVEQVAEFTSYILS-YSSVKTL    293  

GBP_C: domain 1 of 1, from 295 to 591: score 559.2, E = 2.7e-164
                   *->GGiiVTGprLatLVqtYvnAInSGsVPClesavtTLAQiENsaAVqk
                      GGiiV+GprL++LVqtYv AI++Gs+PC+esav+TLAQiENsaAVqk
   mKIAA4246   295    GGIIVNGPRLKSLVQTYVGAISNGSLPCMESAVLTLAQIENSAAVQK 341  

                   AiahYeeqMeQrleLPTetlQeLLdvHrdCEkEAlavFmenSFkNVDvkQ
                   Ai+hYeeqM+Q++++PTetlQeLLd+Hr  E EA++vF++nSFk  Dv+Q
   mKIAA4246   342 AITHYEEQMNQKIQMPTETLQELLDLHRPIESEAIEVFLKNSFK--DVDQ 389  

                   kFqrkLvaqLeaakedFcrkNeeaSssrCqalLedLskdLeelikqGdfs
                   kFq +L+ +L a++++F++kN++ Ss+rC++lLed++++Lee++k G+fs
   mKIAA4246   390 KFQTELGNLLVAKRDAFIKKNMDVSSARCSDLLEDIFGPLEEEVKLGTFS 439  

                   vpGGhrLfleavqeieakYkQvPrKGvkAsevLkefLqDILVHskedlaD
                   +pGG++Lfl+++qe+e+kY+Q P+KG++A+++Lk+++      sk+d+  
   mKIAA4246   440 KPGGYYLFLQMRQELEKKYNQAPGKGLQAEAMLKNYFD-----SKADVVE 484  

                   sLlqtdqaLtlkekaiEaerNikkEaAEkaekllrEkQKrhEeamEakEk
                   +Llqtdq+Lt++ k  E+er +k+EaAE+a++ l+ kQK+ E +m +kEk
   mKIAA4246   485 TLLQTDQSLTEAAKEVEEER-TKAEAAEAANRELEKKQKEFELMMQQKEK 533  

                   syqEhkkqLtekmEserkqLmaEqnrmLEhklkeqeeLleeGFknestll
                   syqEh+k+Ltekm+ e kqL+aEq+++++ kl eqe++l+eGF+nes+ l
   mKIAA4246   534 SYQEHVKKLTEKMKDEQKQLLAEQENIIAAKLREQEKFLKEGFENESKKL 583  

                   ekeIselr<-*
                    +eI  l+   
   mKIAA4246   584 IREIDTLK    591  

//