hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj00189/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4245  ( 606 res)   mfj00189

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
GBP_C    Guanylate-binding protein, C-terminal domain   641.2   5.7e-189   1
GBP      Guanylate-binding protein, N-terminal domain   445.0   6.6e-130   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
GBP        1/1      13   262 ..     1   289 []   445.0 6.6e-130
GBP_C      1/1     264   558 ..     1   305 []   641.2 5.7e-189

Alignments of top-scoring domains:
GBP: domain 1 of 1, from 13 to 262: score 445.0, E = 6.6e-130
                   *->dgqlelNeeALeiLLlsesaitqpVvVVaivGlyRtGKSfLmNkLag
                         ++              +  ++V               L + L g
   mKIAA4245    13    GQDFSASGSSGYCW----MVPYREV---------------LFDELFG 40   

                   YlynkdssdWlggnsekntGFslgsTveseTkGIwmWcvpflidhpnkpe
                                     + F+lgsTv+s+TkGIwmWc+p    hp+kpe
   mKIAA4245    41 ---------------GTESRFPLGSTVQSQTKGIWMWCMP----HPTKPE 71   

                   vtLvLLDTeGlgDveksdnkndawIFALavLLSStfVYNsmgtIneqaLd
                   +tLvLLDTeGlgDvek+d+knd+wIFAL+vLLSStfVYNsm+tIn+qaL+
   mKIAA4245    72 HTLVLLDTEGLGDVEKGDPKNDLWIFALSVLLSSTFVYNSMNTINHQALE 121  

                   qLhlVTELTelIRakssPdegrvadssefvsfFPdfvWtvRDFsLeLeld
                   qLh+VTELTelIRakssP+++++++s+efvsfFPdfvWtvRDF+LeL+l+
   mKIAA4245   122 QLHYVTELTELIRAKSSPNPHGIKNSTEFVSFFPDFVWTVRDFMLELKLN 171  

                   ggaitgdeyLenaLklsqgqheelqnsNelRecIrkfFpkrkCFvfdrPg
                   g++it+deyLenaLkl++g+++++q+sN+ RecIr+fFp+rkCFvf++P+
   mKIAA4245   172 GEDITSDEYLENALKLIPGNNPRIQASNSARECIRRFFPNRKCFVFEWPT 221  

                   lkkkllpqleelredeLdpeFkeqldafcsyifspeskvktl<-*
                   ++ +l++qle+++ed+Ldp+Fke+++af syif+ ++k+ktl   
   mKIAA4245   222 HDIELIKQLETISEDQLDPTFKESAMAFASYIFT-YAKIKTL    262  

GBP_C: domain 1 of 1, from 264 to 558: score 641.2, E = 5.7e-189
                   *->GGiiVTGprLatLVqtYvnAInSGsVPClesavtTLAQiENsaAVqk
                      +Gi+VTG++L+tLV+tYv+AInSG+VPCl++avtTLAQ+ENs+AVqk
   mKIAA4245   264    EGIKVTGNGLGTLVTTYVDAINSGAVPCLDDAVTTLAQRENSVAVQK 310  

                   AiahYeeqMeQrleLPTetlQeLLdvHrdCEkEAlavFmenSFkNVDvkQ
                   A++hY+eqM+Qrl+LPT+t+QeLLdvH++CEkEA+avFme+SFk  D++Q
   mKIAA4245   311 AASHYSEQMAQRLSLPTDTIQELLDVHAACEKEAMAVFMEHSFK--DENQ 358  

                   kFqrkLvaqLeaakedFcrkNeeaSssrCqalLedLskdLeelikqGdfs
                   +F++kLv++L++++++F++kNeeaS+++Cq++L++LskdL+++i++  fs
   mKIAA4245   359 QFLKKLVELLREKNGLFLLKNEEASDKYCQEELDRLSKDLMDNIST--FS 406  

                   vpGGhrLfleavqeieakYkQvPrKGvkAsevLkefLqDILVHskedlaD
                   vpGGhrL+++++++ie++Y+QvPrKGvkAsev+++fLq     s++++++
   mKIAA4245   407 VPGGHRLYMDMREKIEHDYWQVPRKGVKASEVFQNFLQ-----SQAIIES 451  

                   sLlqtdqaLtlkekaiEaerNikkEaAEkaekllrEkQKrhEeamEakEk
                   s+lq+d+aLt+++kai++++ +kkEaAEk+++llr+kQK+h+e+mEa+Ek
   mKIAA4245   452 SILQADTALTAGQKAIAEKH-TKKEAAEKEQDLLRQKQKEHQEYMEAQEK 500  

                   syqEhkkqLtekmEserkqLmaEqnrmLEhklkeqeeLleeGFknestll
                   +++E+++qL++k+E+er+qL++++n+mLE+++keq++++eeG+k+++++l
   mKIAA4245   501 RNKENLEQLRRKLEQEREQLIKDHNMMLEKLTKEQKTFREEGYKTQAEEL 550  

                   ekeIselr<-*
                   ++eI++l+   
   mKIAA4245   551 RREIHQLG    558  

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