hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm08299/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4243  ( 565 res)   mpm08299

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
HMG      DNA-binding domain, high mobility group prot   105.8    5.1e-27   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
HMG        1/1     162   232 ..     1    71 []   105.8  5.1e-27

Alignments of top-scoring domains:
HMG: domain 1 of 1, from 162 to 232: score 105.8, E = 5.1e-27
                   *->kpKrPmsafmlFsqenRakikkenPdlknaeisKklgerWkeLseee
                      ++KrPm+afm+++q  R+k+ +++P+l+nae+sK+lg++W++L e+e
   mKIAA4243   162    HVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESE 208  

                   KapYeekAekdkeryekempeykk<-*
                   K p+ e+Ae+++++++k++p+yk+   
   mKIAA4243   209 KRPFVEEAERLRVQHKKDHPDYKY    232  

//