hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm08299/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4243  ( 565 res)   mpm08299

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
HMG_box  HMG (high mobility group) box                  121.1    2.1e-32   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
HMG_box    1/1     163   231 ..     1    69 []   121.1  2.1e-32

Alignments of top-scoring domains:
HMG_box: domain 1 of 1, from 163 to 231: score 121.1, E = 2.1e-32
                   *->PKRPlsAFflfrqeqRakikaenPglsnaeIskklGekWkaLseeeK
                      +KRP++AF++++q+ R+k++ + P+l+nae+sk+lG++W+ L e+eK
   mKIAA4243   163    VKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESEK 209  

                   apYeakAekeKarYekempeYk<-*
                   +p++++Ae+++++++k++p+Yk   
   mKIAA4243   210 RPFVEEAERLRVQHKKDHPDYK    231  

//