hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mfj/mfj17221/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4241 ( 453 res) mfj17221 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Sec7 Sec7 domain 360.9 8.1e-104 1 PH Pleckstrin homology domain. 96.7 2.7e-24 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Sec7 1/1 116 301 .. 1 226 [] 360.9 8.1e-104 PH 1/1 318 436 .. 1 82 [] 96.7 2.7e-24 Alignments of top-scoring domains: Sec7: domain 1 of 1, from 116 to 301: score 360.9, E = 8.1e-104 *->sknrkkllsegikkfnqkPkkGiqfLqekgflakevDdspqevAkfl +r+k++++g+kkfn++PkkGiqfL+e+ +l+ +sp++vA+fl mKIAA4241 116 TTQRNKQIAMGRKKFNMDPKKGIQFLIENDLLQ----SSPEDVAQFL 158 ydseSadadeseteglnkkaiGdyLgeshdefnrlvLhafvdlfdFsgkd y ++eglnk++iGdyLge +d+fn++vL afv+l++F +++ mKIAA4241 159 Y----------KGEGLNKTVIGDYLGE-RDDFNIKVLQAFVELHEFADLN 197 ldeALRefLesfrLPGEaQkIDRlleaFserYcecNpgvfskagkslski l++ALR+fL+sfrLPGEaQkIDR++eaF++rYc cNpgvf+ mKIAA4241 198 LVQALRQFLWSFRLPGEAQKIDRMMEAFASRYCLCNPGVFQ--------- 238 qqllnaDaaYvLaYSlIMLNTDLHnpnvkkskakdiLvKMtkedFikNlr ++D++YvL++++IMLNT LHn+nv++ K+t e+Fi+++r mKIAA4241 239 ----STDTCYVLSFAIIMLNTSLHNHNVRD--------KPTAERFITMNR 276 ginkeiddgedlprefLeelYdsIknnei<-* gin +g+dlp+e+L++lY+sIkn+++ mKIAA4241 277 GIN----EGGDLPEELLRNLYESIKNEPF 301 PH: domain 1 of 1, from 318 to 436: score 96.7, E = 2.7e-24 *->vikeGwLlkks...k.swkkryfvLfngvLlyyksk...kpkgsipL + +eGwLlk+++++ ++wk+r+f+L++++L+y++ ++++p+g+ipL mKIAA4241 318 PDREGWLLKLGggrVkTWKRRWFILTDNCLYYFEYTtdkEPRGIIPL 364 sgcsvre.p......cFeivt.dr......................tlll +++s+re +++++++cFe+++++++++ + +++ +++ ++++ ++ + mKIAA4241 365 ENLSIREvEdprkpnCFELYNpSHkgqvikackteadgrvvegnhvVYRI 414 qAeseeereeWvealqsaiaka<-* +A+s+ee+eeW++++++ i++ mKIAA4241 415 SAPSPEEKEEWMKSIKASISRD 436 //