hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj17221/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4241  ( 453 res)   mfj17221

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Sec7     Sec7 domain                                    398.7   5.7e-116   1
PH       PH domain                                      111.0    2.3e-29   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Sec7       1/1     116   301 ..     1   221 []   398.7 5.7e-116
PH         1/1     318   434 ..     1    92 []   111.0  2.3e-29

Alignments of top-scoring domains:
Sec7: domain 1 of 1, from 116 to 301: score 398.7, E = 5.7e-116
                   *->lksrkkqliegrkkFNqkPkkGiedLiskglladdkdpqdiAkfLle
                        +r+kq ++grkkFN++PkkGi++Li+++ll   ++p+d+A+fL+ 
   mKIAA4241   116    TTQRNKQIAMGRKKFNMDPKKGIQFLIENDLLQ--SSPEDVAQFLY- 159  

                   eteGLdKkaiGefLGenddfniqvLneFvkNlFdFtglpLdeALRlfLks
                   ++eGL+K++iG++LGe+ddfni vL +Fv+ l++F +l+L++ALR+fL+s
   mKIAA4241   160 KGEGLNKTVIGDYLGERDDFNIKVLQAFVE-LHEFADLNLVQALRQFLWS 208  

                   FRLPGEaQkIdRileaFSerYiqcQyNpgvfsnkkaEDdIecvqpdaDsa
                   FRLPGEaQkIdR++eaF++rY+ c  Npgvf+++             D++
   mKIAA4241   209 FRLPGEAQKIDRMMEAFASRYCLC--NPGVFQST-------------DTC 243  

                   yvLsYSlIMLNTDLHNNpqVKkKkikMTledFieNnrrdLREENEYEELg
                   yvLs+++IMLNT+LH N++V++K   +T e+Fi +nr            g
   mKIAA4241   244 YVLSFAIIMLNTSLH-NHNVRDK---PTAERFITMNR------------G 277  

                   indGgDlprefLtelYesIkneei<-*
                   in+GgDlp+e+L++lYesIkne++   
   mKIAA4241   278 INEGGDLPEELLRNLYESIKNEPF    301  

PH: domain 1 of 1, from 318 to 434: score 111.0, E = 2.3e-29
                   *->vikeGwLlkkg..gkkswkkRyfvLfndvLlyykdkk.kkpkgsipL
                      + +eGwLlk g+++ k+wk+R+f+L++++L+y++  ++k+p+g+ipL
   mKIAA4241   318    PDREGWLLKLGggRVKTWKRRWFILTDNCLYYFEYTTdKEPRGIIPL 364  

                   sgiqvekvpdnkrkncFeirt.dr.....................etlll
                   +++++++v+d++++ncFe+ +++++++  +  +++ +++  ++++ ++ +
   mKIAA4241   365 ENLSIREVEDPRKPNCFELYNpSHkgqvikackteadgrvvegnhVVYRI 414  

                   qaeseeerkeWvkaiqsair<-*
                   +a+s+ee++eW+k+i+ +i+   
   mKIAA4241   415 SAPSPEEKEEWMKSIKASIS    434  

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