hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mia/mia02001/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA4240  ( 416 res)   mia02001

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Sec7     Sec7 domain                                    373.8     1e-107   1
PH       Pleckstrin homology domain.                     99.1    5.3e-25   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Sec7       1/1      77   262 ..     1   226 []   373.8   1e-107
PH         1/1     279   397 ..     1    82 []    99.1  5.3e-25

Alignments of top-scoring domains:
Sec7: domain 1 of 1, from 77 to 262: score 373.8, E = 1e-107
                   *->sknrkkllsegikkfnqkPkkGiqfLqekgflakevDdspqevAkfl
                       ++r+k++++g+kkfn++PkkGiqfL+e+g+l+    ++++++A+fl
   mKIAA4240    77    NMQRNKQVAMGRKKFNMDPKKGIQFLIENGLLK----NTCEDIAQFL 119  

                   ydseSadadeseteglnkkaiGdyLgeshdefnrlvLhafvdlfdFsgkd
                   y          ++eglnk+aiGdyLge +def+++vL+afv+l++F++++
   mKIAA4240   120 Y----------KGEGLNKTAIGDYLGE-RDEFSIQVLYAFVELHEFTDLN 158  

                   ldeALRefLesfrLPGEaQkIDRlleaFserYcecNpgvfskagkslski
                   l++ALR+fL+sfrLPGEaQkIDR++eaF++rYc+cN gvf+         
   mKIAA4240   159 LVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCQCNTGVFQ--------- 199  

                   qqllnaDaaYvLaYSlIMLNTDLHnpnvkkskakdiLvKMtkedFikNlr
                       ++D++YvL++++IMLNT LHnpnvk+        K+t+e+Fi ++r
   mKIAA4240   200 ----STDTCYVLSFAIIMLNTSLHNPNVKD--------KPTVERFIAMNR 237  

                   ginkeiddgedlprefLeelYdsIknnei<-*
                   gin    dg+dlp+e+L++lY+sIkn+++   
   mKIAA4240   238 GIN----DGGDLPEELLRNLYESIKNEPF    262  

PH: domain 1 of 1, from 279 to 397: score 99.1, E = 5.3e-25
                   *->vikeGwLlkks...k.swkkryfvLfngvLlyyksk...kpkgsipL
                      + +eGwLlk+++++ ++wk+r+f+L++++L+y++  ++++p+g+ipL
   mKIAA4240   279    PDREGWLLKLGggrVkTWKRRWFILTDNCLYYFEYTtdkEPRGIIPL 325  

                   sgcsvre.p......cFeivt.dr......................tlll
                   +++s+re +++++++cFe++ +d++++  +  +++ +++  +++++++ +
   mKIAA4240   326 ENLSIREvEdskkpnCFELYIpDNkdqvikackteadgrvvegnhtVYRI 375  

                   qAeseeereeWvealqsaiaka<-*
                   +A+++ee+e+W++++++ai++    
   mKIAA4240   376 SAPTPEEKEDWIKCIKAAISRD    397  

//