hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mia/mia02001/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA4240  ( 416 res)   mia02001

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Sec7     Sec7 domain                                    421.5   7.9e-123   1
PH       PH domain                                      114.0    2.8e-30   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Sec7       1/1      77   262 ..     1   221 []   421.5 7.9e-123
PH         1/1     279   395 ..     1    92 []   114.0  2.8e-30

Alignments of top-scoring domains:
Sec7: domain 1 of 1, from 77 to 262: score 421.5, E = 7.9e-123
                   *->lksrkkqliegrkkFNqkPkkGiedLiskglladdkdpqdiAkfLle
                      +++r+kq+++grkkFN++PkkGi++Li++gll+  ++++diA+fL+ 
   mKIAA4240    77    NMQRNKQVAMGRKKFNMDPKKGIQFLIENGLLK--NTCEDIAQFLY- 120  

                   eteGLdKkaiGefLGenddfniqvLneFvkNlFdFtglpLdeALRlfLks
                   ++eGL+K+aiG++LGe+d+f+iqvL +Fv+ l++Ft+l+L++ALR+fL+s
   mKIAA4240   121 KGEGLNKTAIGDYLGERDEFSIQVLYAFVE-LHEFTDLNLVQALRQFLWS 169  

                   FRLPGEaQkIdRileaFSerYiqcQyNpgvfsnkkaEDdIecvqpdaDsa
                   FRLPGEaQkIdR++eaF++rY+qc  N gvf+++             D++
   mKIAA4240   170 FRLPGEAQKIDRMMEAFAQRYCQC--NTGVFQST-------------DTC 204  

                   yvLsYSlIMLNTDLHNNpqVKkKkikMTledFieNnrrdLREENEYEELg
                   yvLs+++IMLNT+LH Np+VK+K   +T+e+Fi++nr            g
   mKIAA4240   205 YVLSFAIIMLNTSLH-NPNVKDK---PTVERFIAMNR------------G 238  

                   indGgDlprefLtelYesIkneei<-*
                   indGgDlp+e+L++lYesIkne++   
   mKIAA4240   239 INDGGDLPEELLRNLYESIKNEPF    262  

PH: domain 1 of 1, from 279 to 395: score 114.0, E = 2.8e-30
                   *->vikeGwLlkkg..gkkswkkRyfvLfndvLlyykdkk.kkpkgsipL
                      + +eGwLlk g+++ k+wk+R+f+L++++L+y++  ++k+p+g+ipL
   mKIAA4240   279    PDREGWLLKLGggRVKTWKRRWFILTDNCLYYFEYTTdKEPRGIIPL 325  

                   sgiqvekvpdnkrkncFeirt.dr.....................etlll
                   +++++++v+d+k++ncFe+  +d++++  +  +++ +++  +++++++ +
   mKIAA4240   326 ENLSIREVEDSKKPNCFELYIpDNkdqvikackteadgrvvegnhTVYRI 375  

                   qaeseeerkeWvkaiqsair<-*
                   +a+++ee+++W+k+i+ ai+   
   mKIAA4240   376 SAPTPEEKEDWIKCIKAAIS    395  

//