hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mia/mia02001/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4240 ( 416 res) mia02001 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Sec7 Sec7 domain 421.5 7.9e-123 1 PH PH domain 114.0 2.8e-30 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Sec7 1/1 77 262 .. 1 221 [] 421.5 7.9e-123 PH 1/1 279 395 .. 1 92 [] 114.0 2.8e-30 Alignments of top-scoring domains: Sec7: domain 1 of 1, from 77 to 262: score 421.5, E = 7.9e-123 *->lksrkkqliegrkkFNqkPkkGiedLiskglladdkdpqdiAkfLle +++r+kq+++grkkFN++PkkGi++Li++gll+ ++++diA+fL+ mKIAA4240 77 NMQRNKQVAMGRKKFNMDPKKGIQFLIENGLLK--NTCEDIAQFLY- 120 eteGLdKkaiGefLGenddfniqvLneFvkNlFdFtglpLdeALRlfLks ++eGL+K+aiG++LGe+d+f+iqvL +Fv+ l++Ft+l+L++ALR+fL+s mKIAA4240 121 KGEGLNKTAIGDYLGERDEFSIQVLYAFVE-LHEFTDLNLVQALRQFLWS 169 FRLPGEaQkIdRileaFSerYiqcQyNpgvfsnkkaEDdIecvqpdaDsa FRLPGEaQkIdR++eaF++rY+qc N gvf+++ D++ mKIAA4240 170 FRLPGEAQKIDRMMEAFAQRYCQC--NTGVFQST-------------DTC 204 yvLsYSlIMLNTDLHNNpqVKkKkikMTledFieNnrrdLREENEYEELg yvLs+++IMLNT+LH Np+VK+K +T+e+Fi++nr g mKIAA4240 205 YVLSFAIIMLNTSLH-NPNVKDK---PTVERFIAMNR------------G 238 indGgDlprefLtelYesIkneei<-* indGgDlp+e+L++lYesIkne++ mKIAA4240 239 INDGGDLPEELLRNLYESIKNEPF 262 PH: domain 1 of 1, from 279 to 395: score 114.0, E = 2.8e-30 *->vikeGwLlkkg..gkkswkkRyfvLfndvLlyykdkk.kkpkgsipL + +eGwLlk g+++ k+wk+R+f+L++++L+y++ ++k+p+g+ipL mKIAA4240 279 PDREGWLLKLGggRVKTWKRRWFILTDNCLYYFEYTTdKEPRGIIPL 325 sgiqvekvpdnkrkncFeirt.dr.....................etlll +++++++v+d+k++ncFe+ +d++++ + +++ +++ +++++++ + mKIAA4240 326 ENLSIREVEDSKKPNCFELYIpDNkdqvikackteadgrvvegnhTVYRI 375 qaeseeerkeWvkaiqsair<-* +a+++ee+++W+k+i+ ai+ mKIAA4240 376 SAPTPEEKEDWIKCIKAAIS 395 //